Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0062061 Helianthus annuus HOM05D003872 ORTHO05D004592 9.1e-46 186.8 113 100.0
HanXRQChr03g0062091 Helianthus annuus HOM05D003872 ORTHO05D004592 1.2e-32 143.3 91 82.4
HanXRQChr02g0048341 Helianthus annuus HOM05D003872 ORTHO05D004592 1.6e-29 132.9 88 78.4
HanXRQChr07g0191391 Helianthus annuus HOM05D003872 ORTHO05D004592 2.0e-29 132.5 87 79.3
Rhsim09G0212400 Rhododendron simsii HOM05D003872 ORTHO05D004592 3.5e-29 131.7 87 78.2
PSO063G1286 Papaver somniferum HOM05D003872 ORTHO05D004592 5.9e-29 131.0 87 77.0
PSO782G2664 Papaver somniferum HOM05D003872 ORTHO05D004592 5.9e-29 131.0 87 77.0
Solyc06g072790.3 Solanum lycopersicum HOM05D003872 ORTHO05D004592 5.9e-29 131.0 87 74.7
Cfa015874 Carpinus fangiana HOM05D003872 ORTHO05D004592 7.8e-29 130.6 87 77.0
Haze_00615 Corylus avellana HOM05D003872 ORTHO05D004592 7.8e-29 130.6 87 77.0
Glyma.01G228500 Glycine max HOM05D003872 ORTHO05D004592 7.8e-29 130.6 87 74.7
PGSC0003DMG402027033 Solanum tuberosum HOM05D003872 ORTHO05D004592 7.8e-29 130.6 87 74.7
Potri.013G088400 Populus trichocarpa HOM05D003872 ORTHO05D004592 1.0e-28 130.2 87 74.7
Dinv17262 Davidia involucrata HOM05D003872 ORTHO05D004592 1.3e-28 129.8 87 75.9
ECA233G5164 Erigeron canadensis HOM05D003872 ORTHO05D004592 1.3e-28 129.8 87 75.9
QL09p024519 Quercus lobata HOM05D003872 ORTHO05D004592 1.3e-28 129.8 87 77.0
Sopen06g029170 Solanum pennellii HOM05D003872 ORTHO05D004592 1.3e-28 129.8 87 73.6
SGA_v2.0_scaffold287G47149 Striga asiatica HOM05D003872 ORTHO05D004592 1.3e-28 129.8 87 73.6
Migut.E00064 Erythranthe guttata HOM05D003872 ORTHO05D004592 1.7e-28 129.4 87 75.9
Manes.09G124700 Manihot esculenta HOM05D003872 ORTHO05D004592 1.7e-28 129.4 87 75.9
Nn3g19322 Nelumbo nucifera HOM05D003872 ORTHO05D004592 1.7e-28 129.4 87 75.9
Nitab4.5_0000115g0380 Nicotiana tabacum HOM05D003872 ORTHO05D004592 1.7e-28 129.4 87 75.9
Atru.chr12.1980 Acer truncatum HOM05D003872 ORTHO05D004592 2.3e-28 129.0 87 74.7
MSTRG.2325 Avicennia marina HOM05D003872 ORTHO05D004592 2.3e-28 129.0 87 72.4
COL.COLO4_25305 Corchorus olitorius HOM05D003872 ORTHO05D004592 2.3e-28 129.0 87 74.7
Nn1g01951 Nelumbo nucifera HOM05D003872 ORTHO05D004592 2.3e-28 129.0 87 75.9
Peaxi162Scf00815g00355 Petunia axillaris HOM05D003872 ORTHO05D004592 2.3e-28 129.0 88 73.9
Thecc.09G264400 Theobroma cacao HOM05D003872 ORTHO05D004592 2.3e-28 129.0 87 74.7
arahy.Tifrunner.gnm1.ann1.7I89AX Arachis hypogaea HOM05D003872 ORTHO05D004592 2.9e-28 128.6 87 75.9
arahy.Tifrunner.gnm1.ann1.88Y1ZI Arachis hypogaea HOM05D003872 ORTHO05D004592 2.9e-28 128.6 87 75.9
CSS0006998 Camellia sinensis var. sinensis HOM05D003872 ORTHO05D004592 2.9e-28 128.6 87 75.9
Cpa.g.sc39.64 Carica papaya HOM05D003872 ORTHO05D004592 2.9e-28 128.6 87 74.7
Manes.08G162800 Manihot esculenta HOM05D003872 ORTHO05D004592 2.9e-28 128.6 87 74.7
PGR142G0219 Punica granatum HOM05D003872 ORTHO05D004592 2.9e-28 128.6 87 75.9
TAR374G1229 Trochodendron aralioides HOM05D003872 ORTHO05D004592 2.9e-28 128.6 87 74.7
Aqoxy5G00370 Aquilegia oxysepala HOM05D003872 ORTHO05D004592 3.8e-28 128.3 87 74.7
Cc02_g00340 Coffea canephora HOM05D003872 ORTHO05D004592 3.8e-28 128.3 87 75.9
Glyma.11G011300 Glycine max HOM05D003872 ORTHO05D004592 3.8e-28 128.3 87 74.7
Lj3A888T24 Lonicera japonica HOM05D003872 ORTHO05D004592 3.8e-28 128.3 87 74.7
MBI04_g36030_MAGBIO Magnolia biondii HOM05D003872 ORTHO05D004592 3.8e-28 128.3 87 73.6
Phvul.002G039400 Phaseolus vulgaris HOM05D003872 ORTHO05D004592 3.8e-28 128.3 87 74.7
FvH4_7g33880 Fragaria vesca HOM05D003872 ORTHO05D004592 5.0e-28 127.9 87 72.4
MD01G1235300 Malus domestica HOM05D003872 ORTHO05D004592 5.0e-28 127.9 87 75.9
MD07G1307700 Malus domestica HOM05D003872 ORTHO05D004592 5.0e-28 127.9 87 74.7
MD07G1308100 Malus domestica HOM05D003872 ORTHO05D004592 5.0e-28 127.9 87 74.7
DCAR_020405 Daucus carota HOM05D003872 ORTHO05D004592 6.6e-28 127.5 87 73.6
Gohir.A09G104900 Gossypium hirsutum HOM05D003872 ORTHO05D004592 6.6e-28 127.5 87 73.6
Gorai.006G119000 Gossypium raimondii HOM05D003872 ORTHO05D004592 6.6e-28 127.5 87 73.6
THA.LOC104821768 Tarenaya hassleriana HOM05D003872 ORTHO05D004592 6.6e-28 127.5 87 73.6
vmacro10187 Vaccinium macrocarpon HOM05D003872 ORTHO05D004592 6.6e-28 127.5 87 75.9
Ah.04g156820 Amaranthus hybridus HOM05D003872 ORTHO05D004592 8.6e-28 127.1 87 74.7
ATR0743G218 Amborella trichopoda HOM05D003872 ORTHO05D004592 8.6e-28 127.1 87 75.9
Dinv29163 Davidia involucrata HOM05D003872 ORTHO05D004592 8.6e-28 127.1 87 74.7
Medtr4g077800 Medicago truncatula HOM05D003872 ORTHO05D004592 8.6e-28 127.1 87 73.6
ClCG10G009140 Citrullus lanatus HOM05D003872 ORTHO05D004592 1.1e-27 126.7 87 74.7
MELO3C004334.2 Cucumis melo HOM05D003872 ORTHO05D004592 1.1e-27 126.7 87 74.7
CsaV3_2G004570 Cucumis sativus L. HOM05D003872 ORTHO05D004592 1.1e-27 126.7 87 74.7
Nitab4.5_0000021g0440 Nicotiana tabacum HOM05D003872 ORTHO05D004592 1.1e-27 126.7 87 73.6
Rhsim03G0221100 Rhododendron simsii HOM05D002636 ORTHO05D003490 1.1e-27 126.7 87 73.6
EL10Ac3g05086 Beta vulgaris HOM05D003872 ORTHO05D004592 1.5e-27 126.3 87 74.7
Ciclev10019553m.g Citrus clementina HOM05D003872 ORTHO05D004592 1.5e-27 126.3 87 72.4
Duzib150G0049 Durio zibethinus HOM05D003872 ORTHO05D004592 1.5e-27 126.3 87 73.6
Peaxi162Scf00745g00863 Petunia axillaris HOM05D003872 ORTHO05D004592 1.5e-27 126.3 87 72.4
Hund09783 Selenicereus undatus HOM05D003872 ORTHO05D004592 1.5e-27 126.3 87 74.7
TWI34G1659 Tripterygium wilfordii HOM05D003872 ORTHO05D004592 1.5e-27 126.3 87 72.4
CANSAT56G1448 Cannabis sativa HOM05D003872 ORTHO05D004592 1.9e-27 125.9 86 74.4
CiPaw.06G019100 Carya illinoinensis HOM05D003872 ORTHO05D004592 1.9e-27 125.9 87 72.4
Ca_04923_v3 Cicer arietinum L. HOM05D003872 ORTHO05D002695 1.9e-27 125.9 87 72.4
Gohir.D09G101600 Gossypium hirsutum HOM05D003872 ORTHO05D004592 1.9e-27 125.9 87 72.4
Lj6g0012287 Lotus japonicus HOM05D003872 ORTHO05D004592 1.9e-27 125.9 87 74.7
LjContig00222g0027729 Lotus japonicus HOM05D003872 ORTHO05D004592 1.9e-27 125.9 87 74.7
Prupe.2G325300 Prunus persica HOM05D003872 ORTHO05D004592 1.9e-27 125.9 87 73.6
unitig_62.g23692 Utricularia gibba HOM05D003872 ORTHO05D004592 1.9e-27 125.9 87 72.4
VMungo1215G1922 Vigna mungo HOM05D003872 ORTHO05D004592 1.9e-27 125.9 86 74.4
CARHR056530 Cardamine hirsuta HOM05D003872 ORTHO05D004592 2.5e-27 125.6 87 72.4
Duzib170G1103 Durio zibethinus HOM05D003872 ORTHO05D004592 2.5e-27 125.6 86 73.3
FAN03G3493 Fragaria x ananassa HOM05D003872 ORTHO05D004592 2.5e-27 125.6 86 72.1
Gorai.004G012200 Gossypium raimondii HOM05D003872 ORTHO05D004592 2.5e-27 125.6 86 73.3
Lsat_1_v5_gn_6_9400 Lactuca sativa HOM05D003872 ORTHO05D004592 2.5e-27 125.6 87 75.9
Lalb_Chr19g0139931 Lupinus albus HOM05D003872 ORTHO05D004592 2.5e-27 125.6 87 72.4
Nitab4.5_0014944g0010 Nicotiana tabacum HOM05D003872 ORTHO05D004592 2.5e-27 125.6 87 72.4
Sed0014695 Sechium edule HOM05D003872 ORTHO05D004592 2.5e-27 125.6 87 73.6
Gohir.A08G007700 Gossypium hirsutum HOM05D003872 ORTHO05D004592 3.3e-27 125.2 86 73.3
Lalb_Chr09g0320231 Lupinus albus HOM05D003872 ORTHO05D004592 3.3e-27 125.2 87 72.4
Sed0012852 Sechium edule HOM05D003872 ORTHO05D004592 3.3e-27 125.2 86 73.3
Gohir.D08G017800 Gossypium hirsutum HOM05D003872 ORTHO05D004592 4.3e-27 124.8 86 73.3
Nitab4.5_0002193g0030 Nicotiana tabacum HOM05D003872 ORTHO05D004592 4.3e-27 124.8 87 72.4
GSVIVG01024416001 Vitis vinifera HOM05D003872 ORTHO05D004592 4.3e-27 124.8 87 72.4
MSTRG.13439 Avicennia marina HOM05D003872 ORTHO05D004592 5.6e-27 124.4 87 71.3
Eucgr.K00091 Eucalyptus grandis HOM05D003872 ORTHO05D004592 5.6e-27 124.4 87 72.4
Lalb_Chr01g0000961 Lupinus albus HOM05D003872 ORTHO05D004592 5.6e-27 124.4 87 72.4
Oeu017103.1 Olea europaea HOM05D003872 ORTHO05D004592 5.6e-27 124.4 86 72.1
Psat7g171960 Pisum sativum HOM05D003872 ORTHO05D004592 5.6e-27 124.4 86 70.9
Ca_24443_v3 Cicer arietinum L. HOM05D003872 ORTHO05D004592 7.3e-27 124.0 86 74.4
unitig_52.g17166 Utricularia gibba HOM05D003872 ORTHO05D004592 7.3e-27 124.0 87 71.3
RcHm_v2.0_Chr1g0384051 Rosa chinensis HOM05D003872 ORTHO05D004592 9.5e-27 123.6 86 70.9
Solyc03g096930.4 Solanum lycopersicum HOM05D003872 ORTHO05D004592 9.5e-27 123.6 87 71.3
Sopen03g027680 Solanum pennellii HOM05D003872 ORTHO05D004592 9.5e-27 123.6 87 71.3
AT1G65040 Arabidopsis thaliana HOM05D003872 ORTHO05D004592 1.2e-26 123.2 87 71.3
AUR62005901 Chenopodium quinoa HOM05D003872 ORTHO05D004592 1.2e-26 123.2 87 72.4
AUR62028169 Chenopodium quinoa HOM05D003872 ORTHO05D004592 1.2e-26 123.2 87 72.4
Oeu027883.1 Olea europaea HOM05D003872 ORTHO05D004592 1.2e-26 123.2 87 69.0
Psat2g188840 Pisum sativum HOM05D003872 ORTHO05D004592 1.2e-26 123.2 87 72.4
TPR.G37898 Trifolium pratense HOM05D003872 ORTHO05D000315 1.2e-26 123.2 86 73.3
Potri.019G051500 Populus trichocarpa HOM05D003872 ORTHO05D004592 1.6e-26 122.9 87 69.0
Sabra19G0057100 Salix brachista HOM05D003872 ORTHO05D004592 1.6e-26 122.9 87 69.0
THA.LOC104823803 Tarenaya hassleriana HOM05D003872 ORTHO05D004592 1.6e-26 122.9 86 70.9
Sc25g0001200 Simmondsia chinensis HOM05D003872 ORTHO05D004592 2.1e-26 122.5 87 72.4
Carub.0002s1027 Capsella rubella HOM05D003872 ORTHO05D004592 2.8e-26 122.1 87 70.1
FAN10G4058 Fragaria x ananassa HOM05D003872 ORTHO05D004592 3.6e-26 121.7 86 70.9
AL2G19680 Arabidopsis lyrata HOM05D003872 ORTHO05D004592 4.7e-26 121.3 87 70.1
A02p12990 Brassica napus HOM05D003872 ORTHO05D004592 4.7e-26 121.3 87 69.0
C02p21110 Brassica napus HOM05D003872 ORTHO05D004592 4.7e-26 121.3 87 69.0
Sp5g19570 Schrenkiella parvula HOM05D003872 ORTHO05D004592 4.7e-26 121.3 87 71.3
SGA_v2.0_scaffold36G14425 Striga asiatica HOM05D003872 ORTHO05D004592 6.1e-26 120.9 87 69.0
AL3G28740 Arabidopsis lyrata HOM05D003872 ORTHO05D004592 8.0e-26 120.6 86 70.9
AT3G16090 Arabidopsis thaliana HOM05D003872 ORTHO05D004592 8.0e-26 120.6 86 70.9
BcaC03g14671 Brassica carinata HOM05D003872 ORTHO05D004592 1.0e-25 120.2 87 67.8
BolC2t08251H Brassica oleracea HOM05D003872 ORTHO05D004592 1.0e-25 120.2 87 67.8
CARHR091250 Cardamine hirsuta HOM05D003872 ORTHO05D004592 1.0e-25 120.2 88 68.2
Thhalv10022466m.g Eutrema salsugineum HOM05D003872 ORTHO05D004592 1.0e-25 120.2 89 66.3
Medtr5g007710 Medicago truncatula HOM05D003872 ORTHO05D004592 1.0e-25 120.2 87 69.0
Os06g0301000 Oryza sativa ssp. japonica HOM05D003872 ORTHO05D004592 1.0e-25 120.2 87 67.8
Sp3g14440 Schrenkiella parvula HOM05D003872 ORTHO05D004592 1.0e-25 120.2 88 68.2
A01p38010 Brassica napus HOM05D003872 ORTHO05D004592 1.4e-25 119.8 86 69.8
C01p48220 Brassica napus HOM05D003872 ORTHO05D004592 1.4e-25 119.8 86 69.8
BolC1t04785H Brassica oleracea HOM05D003872 ORTHO05D004592 1.4e-25 119.8 86 69.8
BraA01t03860Z Brassica rapa HOM05D003872 ORTHO05D004592 1.4e-25 119.8 86 69.8
Carub.0003s1582 Capsella rubella HOM05D003872 ORTHO05D004592 1.4e-25 119.8 86 69.8
Thhalv10020585m.g Eutrema salsugineum HOM05D003872 ORTHO05D004592 1.4e-25 119.8 86 69.8
Aa31LG8G3240 Aethionema arabicum HOM05D003872 ORTHO05D004592 1.8e-25 119.4 86 67.4
BcaB05g25320 Brassica carinata HOM05D003872 ORTHO05D004592 1.8e-25 119.4 87 67.8
BraA02t06355Z Brassica rapa HOM05D003872 ORTHO05D004592 1.8e-25 119.4 87 67.8
HPP92_015263 Vanilla planifolia HOM05D003872 ORTHO05D004592 1.8e-25 119.4 86 70.9
BcaB04g20876 Brassica carinata HOM05D003872 ORTHO05D004592 2.3e-25 119.0 88 67.0
Zm00001eb197180 Zea mays HOM05D003872 ORTHO05D004592 2.3e-25 119.0 87 67.8
CDE03G0110 Ceratophyllum demersum HOM05D003872 ORTHO05D004592 4.0e-25 118.2 89 64.0
Migut.L01227 Erythranthe guttata HOM05D003872 ORTHO05D004592 4.0e-25 118.2 87 67.8
RcHm_v2.0_Chr1g0384081 Rosa chinensis HOM05D003872 ORTHO05D004592 6.8e-25 117.5 87 69.0
FAN01G2295 Fragaria x ananassa HOM05D003872 ORTHO05D004592 8.9e-25 117.1 83 72.3
Zm00001eb092590 Zea mays HOM05D003872 ORTHO05D004592 8.9e-25 117.1 87 67.8
SEGI_15145 Sequoiadendron giganteum HOM05D003872 ORTHO05D004592 1.2e-24 116.7 86 68.6
Aa31LG2G2240 Aethionema arabicum HOM05D003872 ORTHO05D004592 2.0e-24 115.9 90 64.4
CDE06G2786 Ceratophyllum demersum HOM05D003872 ORTHO05D004592 2.0e-24 115.9 89 62.9
Pp3c16_2890 Physcomitrium patens HOM05D003872 ORTHO05D004592 4.4e-24 114.8 88 64.8
Mapoly0001s0157 Marchantia polymorpha HOM05D003872 ORTHO05D004592 5.7e-24 114.4 88 64.8
CSS0003280 Camellia sinensis var. sinensis HOM05D003872 ORTHO05D004592 1.3e-23 113.2 83 72.3
AagrBONN_evm.TU.Sc2ySwM_362.2448 Anthoceros agrestis HOM05D003872 ORTHO05D004592 2.9e-23 112.1 88 61.4
arahy.Tifrunner.gnm1.ann1.D4CCQ1 Arachis hypogaea HOM05D003872 ORTHO05D004592 3.7e-23 111.7 87 67.8
SMO116G0390 Selaginella moellendorffii HOM05D003872 ORTHO05D004592 6.4e-23 110.9 88 62.5
arahy.Tifrunner.gnm1.ann1.N502YT Arachis hypogaea HOM05D003872 ORTHO05D004592 3.2e-22 108.6 87 66.7
BcaB05g24075 Brassica carinata HOM05D003872 ORTHO05D004592 3.9e-20 101.7 83 61.4
CBR_g8650 Chara braunii HOM05D003872 ORTHO05D004592 6.6e-20 100.9 88 59.1
MCO15G602 Micromonas commoda HOM05D003872 ORTHO05D004592 1.8e-17 92.8 86 52.3
Mapoly0075s0067 Marchantia polymorpha HOM05D003872 ORTHO05D004592 2.3e-17 92.4 84 58.3
Zm00001eb410280 Zea mays HOM05D003872 ORTHO05D004592 6.4e-15 84.3 83 54.2
PRCOL_00004964 Prasinoderma coloniale HOM05D003872 ORTHO05D004592 1.4e-14 83.2 84 50.0
MD01G1235000 Malus domestica HOM05D003872 ORTHO05D004592 1.9e-11 72.8 42 81.0
Cre04.g217922 Chlamydomonas reinhardtii HOM05D003872 ORTHO05D004592 3.3e-11 72.0 88 43.2
Duzib168G0937 Durio zibethinus HOM05D003872 ORTHO05D004592 7.3e-11 70.9 41 80.5
vmacro06507 Vaccinium macrocarpon HOM05D003872 ORTHO05D004592 2.8e-10 68.9 55 61.8


User provided reference genes

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