Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 2402.5 1317 100.0
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1848.2 1317 74.9
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1813.9 1317 75.4
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1659.8 1317 67.3
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1654.8 1317 66.8
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1630.5 1303 67.2
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1624.8 1317 66.4
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1620.1 1317 66.0
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1603.2 1317 64.7
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1584.7 1321 65.4
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1579.7 1317 64.5
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1574.3 1317 64.7
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1562.7 1317 63.5
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1553.9 1317 63.8
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1552.7 1317 64.1
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1550.4 1317 63.4
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1549.6 1317 65.5
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1541.2 1317 62.4
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1539.6 1317 62.5
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1537.7 1317 62.9
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1536.9 1317 62.0
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1536.9 1317 63.5
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1534.2 1318 62.5
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1532.3 1317 63.4
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1530.4 1317 62.0
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1526.9 1317 62.6
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1523.5 1317 62.5
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1521.1 1317 62.6
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1520.8 1317 62.6
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1520.0 1365 61.5
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1520.0 1317 61.5
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1519.2 1317 64.4
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1508.4 1317 62.9
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1507.7 1317 64.3
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1503.4 1317 61.5
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1502.6 1317 62.9
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1502.6 1317 62.3
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1501.9 1317 61.7
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1497.3 1549 56.1
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1493.8 1317 61.3
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1493.8 1317 61.7
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1493.4 1317 61.3
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1486.5 1436 58.3
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1483.8 1325 61.8
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1480.7 1317 61.0
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1480.7 1340 61.6
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1476.8 1303 63.2
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1475.3 1332 61.8
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1474.9 1332 61.8
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1473.4 1359 60.8
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1468.4 1317 61.0
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1464.5 1317 60.7
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1456.8 1317 61.4
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1453.7 1318 62.9
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1450.6 1318 62.7
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1448.3 1370 59.0
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1446.8 1318 62.7
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1443.3 1343 59.5
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1440.2 1317 60.1
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1426.8 1320 61.2
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1424.1 1317 62.0
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1420.2 1318 59.4
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1410.2 1261 61.5
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1406.7 1317 59.0
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1396.7 1303 58.6
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1386.3 1337 57.5
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1384.4 1210 62.1
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1381.7 1303 58.9
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1380.5 1401 56.2
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1377.1 1210 61.7
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1364.4 1370 58.4
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1356.7 1318 57.8
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1342.8 1317 56.2
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1338.2 1254 58.9
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1331.6 1303 56.6
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1194.1 1320 50.8
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1080.1 1319 48.1
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 6.2e-303 1044.6 1318 46.6
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 2.1e-287 993.0 1062 52.4
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 3.4e-277 959.1 1316 45.2
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 3.2e-259 899.4 902 56.1
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 7.2e-251 871.7 1058 48.9
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.2e-250 870.9 1256 43.9
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 6.9e-246 855.1 1025 50.1
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 2.6e-245 853.2 743 60.8
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.4e-241 840.9 759 60.7
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.0e-241 839.7 888 52.6
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 8.2e-239 831.6 761 59.3
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 1.6e-234 817.4 765 59.7
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 1.8e-233 813.9 669 65.6
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 8.8e-233 811.6 1103 45.2
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 3.1e-214 750.0 629 62.8
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.2e-213 748.0 787 54.3
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 2.0e-213 747.3 629 62.8
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 1.7e-204 717.6 728 55.4
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 2.8e-202 710.3 1266 36.7
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 4.7e-202 709.5 728 53.3
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.6e-197 694.5 631 60.9
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 4.9e-191 672.9 558 64.7
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.8e-178 630.6 594 57.9
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.8e-178 630.6 594 57.9
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 4.7e-178 629.8 732 51.6
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 1.6e-170 604.7 594 58.1
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.0e-164 585.5 1373 32.8
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 4.6e-141 506.9 375 70.1
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 6.3e-138 496.5 1382 33.1
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 4.6e-133 480.3 345 72.5
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.0e-132 477.6 415 64.1
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 2.2e-130 471.5 1326 30.6
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.4e-129 468.8 296 80.1
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 2.2e-127 461.5 524 51.7
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 1.3e-122 445.7 436 57.6
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 9.4e-118 429.5 1365 27.3
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 2.4e-113 414.8 458 52.8
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 3.5e-112 411.0 244 84.4
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.8e-111 407.5 222 91.9
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 3.6e-109 401.0 264 78.4
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 1.5e-102 379.0 224 84.4
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.5e-91 342.4 187 90.9
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 6.4e-90 337.0 853 32.5
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 2.3e-87 328.6 223 78.0
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 4.0e-84 317.8 376 49.5
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 5.2e-84 317.4 318 56.6
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.1e-77 295.4 408 44.4
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 3.2e-65 255.0 184 71.2
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.8e-60 239.2 126 91.3
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 9.0e-52 210.3 140 79.3
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 7.1e-49 200.7 139 78.4
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 1.2e-43 183.3 170 58.8
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 1.4e-36 159.8 87 93.1
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 3.4e-35 155.2 168 51.2
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 4.9e-34 151.4 106 76.4
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.1e-30 140.2 72 88.9
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 3.4e-27 128.6 114 61.4
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 7.9e-24 117.5 154 47.4
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 1.1e-22 113.6 257 34.2
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 1.9e-22 112.8 64 87.5
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 5.7e-22 111.3 64 82.8
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 1.7e-21 109.8 106 59.4
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.7e-21 109.8 100 62.0
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 1.4e-17 96.7 165 37.6
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 9.7e-14 84.0 53 77.4
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.1e-12 80.5 90 52.2
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 1.7e-10 73.2 63 66.7
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 1.1e-09 70.5 90 44.4
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 1.9e-09 69.7 76 51.3
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 3.2e-09 68.9 72 50.0
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 4.2e-09 68.6 61 67.2
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 4.2e-09 68.6 56 71.4
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 3.9e-07 62.0 33 93.9
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 3.3e-06 58.9 126 33.3


User provided reference genes

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