Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 1.2e-189 666.4 336 100.0
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 2.0e-144 516.2 337 81.0
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 2.9e-140 502.3 339 82.0
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 2.5e-123 446.0 311 71.1
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 1.8e-121 439.9 298 73.5
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 6.7e-121 438.0 328 69.8
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 6.7e-121 438.0 346 67.1
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 8.8e-121 437.6 350 64.0
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 8.8e-121 437.6 350 64.3
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 4.4e-120 435.3 341 66.9
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 2.2e-119 433.0 341 66.3
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 2.8e-119 432.6 343 66.8
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 3.7e-119 432.2 350 65.7
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 8.3e-119 431.0 324 70.4
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 2.4e-118 429.5 348 63.2
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 1.6e-117 426.8 341 66.9
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.6e-117 426.8 286 74.8
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 2.7e-117 426.0 341 67.2
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 2.7e-117 426.0 347 66.0
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 5.9e-117 424.9 254 80.3
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 7.7e-117 424.5 350 65.4
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.7e-116 423.3 349 63.6
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 2.9e-116 422.5 342 67.0
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 5.0e-116 421.8 345 65.5
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 6.5e-116 421.4 300 70.7
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 1.5e-115 420.2 348 64.1
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 1.9e-115 419.9 337 68.0
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 5.5e-115 418.3 280 74.3
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 7.2e-115 417.9 341 64.5
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 7.2e-115 417.9 291 69.8
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 9.4e-115 417.5 334 66.8
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 9.4e-115 417.5 342 64.6
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 1.6e-114 416.8 325 67.7
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 1.6e-114 416.8 295 71.5
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 2.1e-114 416.4 303 70.3
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 3.6e-114 415.6 327 66.1
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 3.6e-114 415.6 353 62.6
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 4.7e-114 415.2 337 65.0
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 6.1e-114 414.8 280 73.9
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 4.0e-113 412.1 321 66.0
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 5.2e-113 411.8 281 74.0
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 5.2e-113 411.8 324 66.4
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 8.8e-113 411.0 317 66.9
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 2.6e-112 409.5 246 80.9
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 4.4e-112 408.7 304 69.4
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 4.4e-112 408.7 304 69.4
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 4.4e-112 408.7 257 77.0
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 9.8e-112 407.5 356 62.9
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.3e-111 407.1 304 69.1
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.3e-111 407.1 304 69.1
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.7e-111 406.8 345 64.6
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 8.3e-111 404.4 231 82.3
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 1.8e-110 403.3 337 65.9
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 3.1e-110 402.5 336 64.6
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 4.1e-110 402.1 288 70.1
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 1.2e-109 400.6 330 67.0
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.6e-109 400.2 349 64.8
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 4.5e-109 398.7 328 61.0
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.5e-109 398.7 255 74.1
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.0e-108 397.5 222 84.2
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.7e-108 396.7 335 66.9
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 1.7e-108 396.7 343 58.9
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.3e-108 396.4 338 64.5
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.9e-108 396.0 253 73.9
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 5.0e-108 395.2 342 59.9
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 8.6e-108 394.4 223 82.5
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 1.5e-107 393.7 342 60.2
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.9e-107 393.3 294 67.7
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 2.5e-107 392.9 286 66.4
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 3.3e-107 392.5 252 75.8
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 5.5e-107 391.7 224 83.0
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 7.2e-107 391.3 339 61.1
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.2e-106 390.6 285 66.3
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 1.2e-106 390.6 222 83.3
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 3.6e-106 389.0 345 58.8
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 8.0e-106 387.9 335 60.6
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 1.4e-105 387.1 227 79.3
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 2.3e-105 386.3 224 81.7
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 2.3e-105 386.3 336 60.1
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.7e-103 380.2 280 67.5
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 3.7e-103 379.0 327 61.5
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 4.9e-103 378.6 336 61.0
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 1.2e-101 374.0 219 79.5
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 1.1e-94 350.9 304 65.8
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 9.2e-94 347.8 343 57.4
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.6e-93 347.1 205 81.0
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.0e-92 344.4 222 76.6
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 3.9e-92 342.4 359 52.4
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.1e-91 340.9 235 68.1
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.5e-91 340.5 236 67.8
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 7.3e-91 338.2 257 62.3
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 2.6e-88 329.7 484 42.6
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.1e-85 320.1 347 54.8
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 6.0e-85 318.5 278 62.9
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 6.6e-84 315.1 345 53.0
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 7.3e-83 311.6 210 73.3
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 1.8e-81 307.0 264 64.0
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 3.4e-80 302.8 248 56.0
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 4.7e-74 282.3 252 55.2
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 8.1e-74 281.6 255 53.7
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 2.4e-73 280.0 171 78.4
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 2.4e-73 280.0 167 78.4
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 3.2e-70 269.6 224 62.5
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 6.0e-61 238.8 244 55.7
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 8.7e-60 235.0 205 52.7
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 5.6e-59 232.3 144 77.8
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.6e-59 232.3 220 54.5
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 7.6e-56 221.9 240 60.4
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.7e-53 213.4 213 53.1
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 3.5e-53 213.0 199 62.3
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 1.3e-50 204.5 201 60.2
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.5e-45 186.4 200 55.0
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 6.1e-37 159.1 96 78.1
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 2.3e-36 157.1 175 42.9
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 9.0e-33 145.2 109 67.0
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.7e-28 129.0 110 60.9
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 6.3e-26 122.5 61 90.2
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 4.7e-21 106.3 114 52.6
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.9e-20 103.2 105 52.4
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.2e-13 81.6 43 90.7
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.6e-08 64.7 171 36.3
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.8e-07 60.1 68 48.5
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.8e-07 60.1 68 48.5


User provided reference genes

Program Settings