Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 1.2e-213 746.1 361 100.0
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 8.4e-170 600.5 364 80.8
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 3.6e-160 568.5 370 76.5
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 7.0e-140 501.1 367 66.5
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 4.4e-134 481.9 361 64.3
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.3e-133 480.3 367 64.9
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 1.3e-133 480.3 387 62.3
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.4e-132 476.1 366 64.2
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 5.4e-132 474.9 367 64.9
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 3.5e-131 472.2 370 63.5
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 5.9e-131 471.5 367 64.9
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 8.5e-130 467.6 365 62.7
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 1.1e-129 467.2 360 62.2
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 1.5e-129 466.8 360 62.2
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 2.5e-129 466.1 366 61.2
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 3.2e-129 465.7 368 62.0
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 5.5e-129 464.9 360 61.7
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 7.2e-129 464.5 369 62.1
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 9.4e-129 464.2 367 61.9
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 1.0e-127 460.7 365 61.6
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.2e-126 457.2 361 62.0
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 3.4e-126 455.7 362 62.2
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 3.4e-126 455.7 366 61.2
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 9.8e-126 454.1 383 59.8
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 1.3e-125 453.8 360 62.2
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 3.7e-125 452.2 351 64.4
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 8.3e-125 451.1 368 61.1
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.1e-124 450.7 370 59.2
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 1.4e-124 450.3 365 58.9
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 7.0e-124 448.0 371 59.0
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 7.0e-124 448.0 363 59.8
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 7.0e-124 448.0 368 60.9
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 9.2e-124 447.6 361 62.6
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 1.2e-123 447.2 375 58.9
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 2.0e-123 446.4 370 58.9
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 2.0e-123 446.4 370 58.6
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 2.0e-123 446.4 369 61.0
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 2.7e-123 446.0 434 56.0
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 4.5e-123 445.3 389 57.1
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 5.9e-123 444.9 360 60.0
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 5.9e-123 444.9 381 58.0
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 1.7e-122 443.4 356 60.4
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 1.7e-122 443.4 364 59.3
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 2.3e-122 443.0 362 59.9
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 3.8e-122 442.2 360 59.7
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 3.8e-122 442.2 366 59.6
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 5.0e-122 441.8 365 57.5
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 6.6e-122 441.4 389 57.6
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 1.5e-121 440.3 362 60.2
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 1.5e-121 440.3 360 59.7
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 1.5e-121 440.3 365 57.8
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 1.9e-121 439.9 367 58.3
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 3.3e-121 439.1 368 58.4
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 3.3e-121 439.1 382 57.9
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 5.6e-121 438.3 363 57.6
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 1.2e-120 437.2 365 59.7
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 1.6e-120 436.8 361 59.3
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 2.1e-120 436.4 392 56.9
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 4.7e-120 435.3 365 58.9
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 8.0e-120 434.5 368 56.0
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 1.4e-119 433.7 356 59.8
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 2.3e-119 433.0 370 57.6
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 2.3e-119 433.0 370 57.6
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 3.0e-119 432.6 360 58.1
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 5.2e-119 431.8 368 57.6
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 3.4e-118 429.1 368 58.2
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 7.5e-118 427.9 453 50.6
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 4.9e-117 425.2 414 53.4
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 4.9e-117 425.2 369 56.6
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.4e-116 423.7 411 53.8
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 2.8e-112 409.5 381 53.5
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 2.8e-112 409.5 352 58.2
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 3.1e-111 406.0 357 56.6
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 6.8e-111 404.8 367 55.6
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 1.2e-110 404.1 338 58.9
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 3.4e-110 402.5 477 48.0
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 4.4e-110 402.1 366 52.2
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 1.2e-107 394.0 301 65.1
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 2.7e-107 392.9 365 55.3
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 4.6e-107 392.1 356 52.2
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.7e-106 390.2 382 54.2
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 3.1e-103 379.4 357 52.1
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 3.1e-103 379.4 358 53.1
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 3.7e-101 372.5 360 49.7
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 3.3e-97 359.4 362 52.5
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 1.1e-87 327.8 480 41.2
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 5.4e-84 315.5 310 53.5
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 7.1e-84 315.1 215 68.4
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 3.5e-83 312.8 277 57.8
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 2.0e-78 297.0 297 52.5
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 4.5e-78 295.8 214 65.4
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 6.0e-75 285.4 361 41.8
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 5.1e-74 282.3 403 42.2
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 4.3e-73 279.3 168 74.4
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 1.1e-71 274.6 353 45.3
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 1.5e-70 270.8 372 40.6
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 6.4e-69 265.4 357 38.4
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 9.3e-68 261.5 168 67.9
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 6.7e-66 255.4 184 64.1
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 7.9e-59 231.9 213 54.0
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 2.5e-57 226.9 141 70.9
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 1.1e-52 211.5 245 49.0
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 1.6e-51 207.6 391 39.9
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 3.3e-49 199.9 215 49.8
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 3.7e-48 196.4 120 75.8
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 4.8e-48 196.1 556 27.7
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 2.6e-46 190.3 134 64.2
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 5.5e-44 182.6 237 42.2
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.6e-43 181.0 114 71.1
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 1.6e-43 181.0 194 50.0
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 1.4e-42 177.9 363 34.7
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 1.5e-38 164.5 271 39.5
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 1.1e-36 158.3 107 65.4
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 2.0e-33 147.5 178 44.9
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 2.6e-33 147.1 415 27.0
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 1.9e-28 131.0 137 46.0
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 3.2e-28 130.2 228 34.6
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 2.0e-25 120.9 79 64.6
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 8.2e-24 115.5 350 30.0
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.7e-19 100.5 122 43.4
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 8.0e-19 99.0 424 24.3
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 1.8e-18 97.8 393 26.7
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 2.3e-18 97.4 59 72.9
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 1.3e-16 91.7 54 74.1
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 4.8e-16 89.7 71 62.0
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 4.8e-16 89.7 71 62.0
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 1.1e-15 88.6 85 49.4
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 1.1e-15 88.6 103 46.6
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.4e-15 88.2 53 69.8
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.6e-14 84.7 59 59.3
AagrBONN_evm.TU.Sc2ySwM_117.187 Anthoceros agrestis HOM05D002561 ORTHO05D006466 6.1e-11 72.8 347 21.9
Dinv10164 Davidia involucrata HOM05D002561 ORTHO05D006466 4.0e-10 70.1 349 24.1
Dinv07536 Davidia involucrata HOM05D002561 ORTHO05D006466 8.8e-10 68.9 349 23.5
HanXRQChr05g0140561 Helianthus annuus HOM05D002561 ORTHO05D006466 8.8e-10 68.9 347 23.3
AUR62008772 Chenopodium quinoa HOM05D002561 ORTHO05D006466 1.2e-09 68.6 346 22.3
Thhalv10025176m.g Eutrema salsugineum HOM05D002561 ORTHO05D006466 1.5e-09 68.2 350 22.6
Sc24g0000990 Simmondsia chinensis HOM05D002561 ORTHO05D006466 1.5e-09 68.2 347 22.2
Cc05_g07670 Coffea canephora HOM05D002561 ORTHO05D006466 2.0e-09 67.8 348 23.0
ECA240G2497 Erigeron canadensis HOM05D002561 ORTHO05D006466 2.6e-09 67.4 348 25.0
vmacro12361 Vaccinium macrocarpon HOM05D002561 ORTHO05D006466 2.6e-09 67.4 360 22.2
CSS0024007 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D006466 4.4e-09 66.6 347 23.9
GSVIVG01020601001 Vitis vinifera HOM05D002561 ORTHO05D006466 4.4e-09 66.6 349 23.8
Ah.03g138410 Amaranthus hybridus HOM05D002561 ORTHO05D006466 5.7e-09 66.2 347 23.3
Gohir.D02G177700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 5.7e-09 66.2 348 21.8
COL.COLO4_28034 Corchorus olitorius HOM05D002561 ORTHO05D006466 7.5e-09 65.9 349 21.5
Gohir.A03G154700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 7.5e-09 65.9 347 21.6
Gorai.005G199500 Gossypium raimondii HOM05D002561 ORTHO05D006466 9.8e-09 65.5 348 21.8
Lalb_Chr25g0280621 Lupinus albus HOM05D002561 ORTHO05D006466 9.8e-09 65.5 345 22.0
Thecc.02G185400 Theobroma cacao HOM05D002561 ORTHO05D006466 9.8e-09 65.5 348 21.3
EL10Ac9g20811 Beta vulgaris HOM05D002561 ORTHO05D006466 1.3e-08 65.1 346 22.5
DCAR_013032 Daucus carota HOM05D002561 ORTHO05D006466 1.3e-08 65.1 347 21.9
Duzib052G0349 Durio zibethinus HOM05D002561 ORTHO05D006466 1.3e-08 65.1 349 21.8
Nitab4.5_0000621g0150 Nicotiana tabacum HOM05D002561 ORTHO05D006466 1.7e-08 64.7 346 22.8
Aa31LG2G21970 Aethionema arabicum HOM05D002561 ORTHO05D006466 2.2e-08 64.3 348 21.8
AUR62025466 Chenopodium quinoa HOM05D002561 ORTHO05D006466 2.2e-08 64.3 346 22.0
CARHR236220 Cardamine hirsuta HOM05D002561 ORTHO05D006466 2.8e-08 63.9 349 22.9
FvH4_2g10410 Fragaria vesca HOM05D002561 ORTHO05D006466 2.8e-08 63.9 347 22.5
BcaC06g32621 Brassica carinata HOM05D002561 ORTHO05D006466 3.7e-08 63.5 346 21.1
ATR0665G052 Amborella trichopoda HOM05D002561 ORTHO05D006466 8.3e-08 62.4 345 21.4
Hund07915 Selenicereus undatus HOM05D002561 ORTHO05D006466 1.1e-07 62.0 345 21.2
CiPaw.03G181000 Carya illinoinensis HOM05D002561 ORTHO05D006466 1.4e-07 61.6 346 21.1
Sp7g26430 Schrenkiella parvula HOM05D002561 ORTHO05D006466 1.4e-07 61.6 348 21.6
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 1.8e-07 61.2 333 20.7
Medtr1g022960 Medicago truncatula HOM05D002561 ORTHO05D006466 1.8e-07 61.2 347 22.5
Aqoxy4G00646 Aquilegia oxysepala HOM05D002561 ORTHO05D006466 3.1e-07 60.5 346 22.3
Cfa014656 Carpinus fangiana HOM05D002561 ORTHO05D006466 3.1e-07 60.5 346 21.1
Ca_13381_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 3.1e-07 60.5 347 23.3
Ca_30047_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 3.1e-07 60.5 347 23.3
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 4.1e-07 60.1 40 52.5
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 4.1e-07 60.1 212 25.0
FAN15G2087 Fragaria x ananassa HOM05D002561 ORTHO05D006466 5.4e-07 59.7 347 21.9
FAN20G3107 Fragaria x ananassa HOM05D002561 ORTHO05D006466 7.0e-07 59.3 347 21.9
FAN27G0984 Fragaria x ananassa HOM05D002561 ORTHO05D006466 7.0e-07 59.3 347 21.9
AT4G28450 Arabidopsis thaliana HOM05D002561 ORTHO05D006466 9.2e-07 58.9 348 21.6
CAN.G209.6 Capsicum annuum HOM05D002561 ORTHO05D006466 9.2e-07 58.9 344 20.9
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 9.2e-07 58.9 40 62.5
MCO01G363 Micromonas commoda HOM05D002561 ORTHO05D006466 1.2e-06 58.5 162 26.5
Cpa.g.sc83.89 Carica papaya HOM05D002561 ORTHO05D006466 1.6e-06 58.2 347 21.3
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 1.6e-06 58.2 49 53.1
AL7G24110 Arabidopsis lyrata HOM05D002561 ORTHO05D006466 2.0e-06 57.8 348 21.6
Actinidia29794 Actinidia chinensis HOM05D005790 ORTHO05D030850 4.5e-06 56.6 31 67.7
Eucgr.K01052 Eucalyptus grandis HOM05D002561 ORTHO05D006466 7.8e-06 55.8 348 20.7


User provided reference genes

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