Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-64 249.6 120 100.0
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-64 249.6 120 100.0
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-64 249.6 120 100.0
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-64 249.6 120 100.0
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-64 249.6 120 100.0
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-64 249.6 120 100.0
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-64 249.6 120 100.0
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-64 249.6 120 100.0
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-64 249.6 120 100.0
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 1.5e-62 242.7 120 95.8
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 4.8e-61 237.7 120 96.7
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 6.2e-61 237.3 120 93.3
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 8.2e-61 236.9 120 93.3
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 8.2e-61 236.9 120 93.3
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 1.1e-60 236.5 118 94.1
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 1.8e-60 235.7 120 91.7
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.4e-60 235.3 120 91.7
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.1e-60 235.0 120 91.7
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.1e-60 235.0 120 91.7
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 4.0e-60 234.6 120 93.3
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 1.2e-59 233.0 120 90.8
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 1.5e-59 232.6 120 90.0
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 2.0e-59 232.3 120 91.7
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 2.0e-59 232.3 120 90.8
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 3.4e-59 231.5 117 91.5
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 7.6e-59 230.3 120 92.5
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.0e-58 229.9 120 90.8
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 1.0e-58 229.9 119 89.1
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 1.3e-58 229.6 120 89.2
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 2.2e-58 228.8 120 89.2
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 2.2e-58 228.8 120 87.5
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 3.8e-58 228.0 120 89.2
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 4.9e-58 227.6 120 90.0
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 4.9e-58 227.6 120 87.5
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 6.5e-58 227.3 120 88.3
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 8.4e-58 226.9 120 88.3
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 1.9e-57 225.7 120 92.5
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 3.2e-57 224.9 120 93.3
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 4.2e-57 224.6 120 86.7
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 5.5e-57 224.2 117 88.0
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 7.1e-57 223.8 120 88.3
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 7.1e-57 223.8 120 87.5
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.6e-56 222.6 117 88.0
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 1.3e-55 219.5 120 87.5
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.3e-55 219.5 117 87.2
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.3e-55 219.5 117 87.2
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.3e-55 219.5 117 87.2
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 3.9e-55 218.0 120 85.0
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 5.1e-55 217.6 120 86.7
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 5.1e-55 217.6 120 86.7
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 5.1e-55 217.6 120 86.7
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 5.1e-55 217.6 120 86.7
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 5.1e-55 217.6 120 86.7
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 5.1e-55 217.6 120 86.7
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 1.5e-54 216.1 120 85.8
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.5e-54 216.1 117 86.3
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 1.9e-54 215.7 120 85.8
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 3.3e-54 214.9 120 85.8
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 3.3e-54 214.9 120 85.8
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 3.3e-54 214.9 120 85.8
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 3.3e-54 214.9 120 85.8
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 3.3e-54 214.9 120 85.8
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 4.3e-54 214.5 120 85.0
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 7.4e-54 213.8 117 85.5
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 2.2e-53 212.2 117 85.5
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 2.2e-53 212.2 119 84.9
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 8.2e-53 210.3 120 84.2
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 2.6e-51 205.3 113 84.1
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.0e-50 203.4 117 85.5
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 1.7e-50 202.6 119 82.4
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 2.2e-50 202.2 120 81.7
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 8.5e-50 200.3 119 79.8
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 2.7e-48 195.3 120 76.7
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 1.8e-47 192.6 95 96.8
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 1.8e-47 192.6 95 96.8
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 3.9e-47 191.4 103 89.3
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 1.1e-46 189.9 97 93.8
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 1.1e-46 189.9 97 93.8
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.5e-46 189.5 96 93.8
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.0e-46 189.1 112 77.7
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.4e-46 187.2 98 88.8
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 7.4e-46 187.2 94 93.6
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.3e-45 186.4 115 75.7
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 1.3e-45 186.4 119 73.1
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.2e-45 185.7 98 87.8
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 2.2e-45 185.7 114 76.3
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 6.3e-45 184.1 120 80.0
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 3.1e-44 181.8 96 89.6
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 6.9e-44 180.6 97 87.6
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.2e-43 179.9 113 74.3
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 1.5e-43 179.5 94 88.3
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 1.5e-43 179.5 97 84.5
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 4.5e-43 177.9 94 88.3
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 7.7e-43 177.2 98 83.7
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 1.3e-42 176.4 94 87.2
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.7e-42 176.0 98 83.7
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 2.2e-42 175.6 95 84.2
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 2.9e-42 175.3 94 88.3
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 3.8e-42 174.9 90 91.1
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 6.5e-42 174.1 120 71.7
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 8.5e-42 173.7 94 85.1
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 8.5e-42 173.7 103 79.6
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 1.1e-41 173.3 122 71.3
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.5e-41 172.2 95 83.2
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 7.2e-41 170.6 100 80.0
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 9.4e-41 170.2 92 84.8
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.7e-40 167.9 92 83.7
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 1.0e-39 166.8 117 70.9
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.0e-39 165.2 87 88.5
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.9e-39 164.9 93 82.8
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.0e-38 162.5 93 78.5
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.8e-37 157.9 89 82.0
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.4e-36 156.4 86 83.7
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.4e-36 155.6 88 79.5
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 1.2e-35 153.3 87 87.4
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 2.6e-35 152.1 98 74.5
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 2.6e-35 152.1 126 61.1
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.6e-35 152.1 117 66.7
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.9e-35 151.0 88 80.7
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 3.8e-34 148.3 86 84.9
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.4e-33 146.4 78 84.6
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 1.8e-31 139.4 76 84.2
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.8e-31 139.4 85 76.5
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 1.5e-30 136.3 81 79.0
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 2.0e-30 136.0 117 52.1
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 2.2e-29 132.5 68 85.3
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.2e-29 132.5 78 79.5
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.2e-29 132.5 78 79.5
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.2e-29 132.5 78 79.5
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.2e-29 132.5 78 79.5
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.2e-29 132.5 78 79.5
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 2.8e-29 132.1 124 51.6
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 6.3e-29 131.0 77 79.2
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 6.3e-29 131.0 77 79.2
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 6.3e-29 131.0 77 79.2
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 6.3e-29 131.0 77 79.2
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 6.3e-29 131.0 77 79.2
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.4e-28 129.8 70 82.9
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.8e-28 129.4 66 89.4
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 2.0e-27 125.9 125 49.6
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.0e-26 123.6 118 58.5
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 2.9e-26 122.1 121 51.2
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 5.0e-26 121.3 96 62.5
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 2.7e-24 115.5 59 89.8
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 1.4e-23 113.2 64 85.9
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.5e-22 109.8 70 68.6
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 2.0e-22 109.4 61 85.2
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-22 109.0 56 89.3
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-22 109.0 75 68.0
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 7.5e-22 107.5 62 80.6
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 1.3e-21 106.7 62 79.0
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-20 103.6 60 81.7
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 3.1e-20 102.1 62 80.6
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 3.1e-20 102.1 91 57.1
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 4.1e-20 101.7 64 78.1
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 4.1e-20 101.7 111 45.9
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 5.3e-20 101.3 78 62.8
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.6e-19 99.8 110 50.0
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 3.5e-19 98.6 55 85.5
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 1.3e-18 96.7 61 78.7
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 2.2e-18 95.9 93 54.8
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.0e-18 94.7 53 83.0
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.0e-18 94.7 53 83.0
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 3.6e-16 88.6 52 76.9
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 1.0e-15 87.0 49 83.7
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.3e-15 85.9 41 92.7
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 5.2e-15 84.7 57 77.2
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 1.1e-12 77.0 47 76.6
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.1e-12 77.0 41 87.8
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.4e-12 76.6 41 80.5
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 4.1e-12 75.1 33 100.0
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 4.1e-12 75.1 49 73.5
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 7.0e-12 74.3 49 73.5
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 7.7e-11 70.9 49 73.5
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 1.0e-10 70.5 33 90.9
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 1.0e-10 70.5 33 90.9
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 6.6e-10 67.8 36 83.3
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 3.3e-09 65.5 47 68.1
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 5.5e-09 64.7 37 70.3
Migut.H00990 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.6e-08 63.2 36 86.1
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 1.6e-08 63.2 34 88.2
FAN07G1499 Fragaria x ananassa HOM05D000806 ORTHO05D007429 4.0e-07 58.5 54 55.6


User provided reference genes

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