Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0038371 Helianthus annuus HOM05D003508 ORTHO05D004579 3.3e-46 188.0 91 100.0
HanXRQChr11g0342191 Helianthus annuus HOM05D003508 ORTHO05D004579 5.5e-33 144.1 100 73.0
Lsat_1_v5_gn_2_104600 Lactuca sativa HOM05D003508 ORTHO05D004579 5.5e-33 144.1 100 73.0
HanXRQChr15g0478241 Helianthus annuus HOM05D003508 ORTHO05D004579 7.1e-33 143.7 75 93.3
Lsat_1_v5_gn_0_7601 Lactuca sativa HOM05D003508 ORTHO05D004579 4.3e-30 134.4 100 68.0
Lj5g0024073 Lotus japonicus HOM05D003508 ORTHO05D004579 9.6e-30 133.3 100 67.0
CSS0009164 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 1.3e-29 132.9 100 67.0
CSS0049709 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 1.3e-29 132.9 100 67.0
ECA238G0717 Erigeron canadensis HOM05D003508 ORTHO05D004579 1.6e-29 132.5 97 69.1
MD02G1256300 Malus domestica HOM05D003508 ORTHO05D004579 1.6e-29 132.5 100 67.0
MD07G1064100 Malus domestica HOM05D003508 ORTHO05D004579 3.7e-29 131.3 99 66.7
Prupe.2G078900 Prunus persica HOM05D003508 ORTHO05D004579 3.7e-29 131.3 100 67.0
Dinv09607 Davidia involucrata HOM05D003508 ORTHO05D004579 4.8e-29 131.0 100 64.0
Sopen04g004800 Solanum pennellii HOM05D003508 ORTHO05D004579 2.4e-28 128.6 100 64.0
CANSAT56G3087 Cannabis sativa HOM05D003508 ORTHO05D004579 3.1e-28 128.3 100 63.0
Lalb_Chr06g0166461 Lupinus albus HOM05D003508 ORTHO05D004579 4.0e-28 127.9 100 65.0
Psat6g231280 Pisum sativum HOM05D003508 ORTHO05D004579 5.3e-28 127.5 95 68.4
arahy.Tifrunner.gnm1.ann1.Q6BHJ0 Arachis hypogaea HOM05D003508 ORTHO05D004579 6.9e-28 127.1 100 63.0
arahy.Tifrunner.gnm1.ann1.Y4RU6H Arachis hypogaea HOM05D003508 ORTHO05D004579 6.9e-28 127.1 100 63.0
Lalb_Chr21g0309221 Lupinus albus HOM05D003508 ORTHO05D004579 6.9e-28 127.1 100 64.0
Actinidia06698 Actinidia chinensis HOM05D003508 ORTHO05D004579 9.0e-28 126.7 97 64.9
TPR.G2474 Trifolium pratense HOM05D003508 ORTHO05D004579 9.0e-28 126.7 96 66.7
Ciclev10015368m.g Citrus clementina HOM05D003508 ORTHO05D004579 1.2e-27 126.3 95 66.3
Lalb_Chr02g0146341 Lupinus albus HOM05D003508 ORTHO05D004579 1.5e-27 125.9 100 63.0
Nitab4.5_0000691g0130 Nicotiana tabacum HOM05D003508 ORTHO05D004579 2.0e-27 125.6 100 62.0
Nitab4.5_0003927g0020 Nicotiana tabacum HOM05D003508 ORTHO05D004579 2.0e-27 125.6 100 62.0
CAN.G645.2 Capsicum annuum HOM05D003508 ORTHO05D004579 2.6e-27 125.2 100 62.0
Ca_25671_v3 Cicer arietinum L. HOM05D003508 ORTHO05D004579 2.6e-27 125.2 95 66.3
Dinv11847 Davidia involucrata HOM05D003508 ORTHO05D004579 2.6e-27 125.2 100 61.0
Medtr1g112230 Medicago truncatula HOM05D003508 ORTHO05D004579 3.4e-27 124.8 95 67.4
Cfa010322 Carpinus fangiana HOM05D003508 ORTHO05D004579 4.5e-27 124.4 99 61.6
CiPaw.13G040400 Carya illinoinensis HOM05D003508 ORTHO05D004579 4.5e-27 124.4 96 63.5
CiPaw.14G033200 Carya illinoinensis HOM05D003508 ORTHO05D004579 4.5e-27 124.4 99 60.6
Haze_03293 Corylus avellana HOM05D003508 ORTHO05D004579 4.5e-27 124.4 99 61.6
PGSC0003DMG400011923 Solanum tuberosum HOM05D003508 ORTHO05D004579 4.5e-27 124.4 100 62.0
Cpa.g.sc183.13 Carica papaya HOM05D003508 ORTHO05D004579 5.8e-27 124.0 95 64.2
PGSC0003DMG400016014 Solanum tuberosum HOM05D003508 ORTHO05D004579 7.6e-27 123.6 100 62.0
Hma1.2p1_0356F.1_g134090 Hydrangea macrophylla HOM05D003508 ORTHO05D004579 1.0e-26 123.2 97 62.9
Actinidia34720 Actinidia chinensis HOM05D003508 ORTHO05D004579 1.3e-26 122.9 97 62.9
Phvul.007G021200 Phaseolus vulgaris HOM05D003508 ORTHO05D004579 1.3e-26 122.9 100 61.0
RcHm_v2.0_Chr1g0332421 Rosa chinensis HOM05D003508 ORTHO05D004579 1.3e-26 122.9 97 63.9
Lj3A928T54 Lonicera japonica HOM05D003508 ORTHO05D004579 1.7e-26 122.5 100 59.0
Nitab4.5_0001437g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 2.2e-26 122.1 95 63.2
Peaxi162Scf00519g00710 Petunia axillaris HOM05D003508 ORTHO05D004579 2.2e-26 122.1 95 64.2
QL04p046077 Quercus lobata HOM05D003508 ORTHO05D004579 2.2e-26 122.1 94 66.0
Glyma.20G109900 Glycine max HOM05D003508 ORTHO05D004579 2.9e-26 121.7 100 61.0
AL4G36000 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 3.8e-26 121.3 95 62.1
CARHR133390 Cardamine hirsuta HOM05D003508 ORTHO05D004579 3.8e-26 121.3 95 62.1
FvH4_7g05610 Fragaria vesca HOM05D003508 ORTHO05D004579 3.8e-26 121.3 97 62.9
FAN01G1243 Fragaria x ananassa HOM05D003508 ORTHO05D004579 3.8e-26 121.3 97 62.9
FAN03G1980 Fragaria x ananassa HOM05D003508 ORTHO05D004579 3.8e-26 121.3 97 62.9
FAN06G4590 Fragaria x ananassa HOM05D003508 ORTHO05D004579 3.8e-26 121.3 97 62.9
FAN10G3478 Fragaria x ananassa HOM05D003508 ORTHO05D004579 3.8e-26 121.3 97 62.9
Sp4g21060 Schrenkiella parvula HOM05D003508 ORTHO05D004579 3.8e-26 121.3 96 63.5
Atru.chr12.1012 Acer truncatum HOM05D003508 ORTHO05D004579 4.9e-26 120.9 100 62.0
AT2G38700 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 4.9e-26 120.9 95 62.1
Hund14639 Selenicereus undatus HOM05D003508 ORTHO05D004579 4.9e-26 120.9 95 62.1
VMungo0720G2493 Vigna mungo HOM05D003508 ORTHO05D004579 4.9e-26 120.9 100 60.0
Carub.0005s2084 Capsella rubella HOM05D003508 ORTHO05D004579 6.5e-26 120.6 95 62.1
Cc02_g09750 Coffea canephora HOM05D003508 ORTHO05D004579 6.5e-26 120.6 97 60.8
Thhalv10016888m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 6.5e-26 120.6 95 63.2
Lj2C31T21 Lonicera japonica HOM05D003508 ORTHO05D004579 8.4e-26 120.2 100 60.0
Nitab4.5_0005622g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 8.4e-26 120.2 95 62.1
PGSC0003DMG400023978 Solanum tuberosum HOM05D003508 ORTHO05D004579 1.1e-25 119.8 100 61.0
Aqoxy4G02791 Aquilegia oxysepala HOM05D003508 ORTHO05D004579 1.4e-25 119.4 95 62.1
AL5G35290 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 1.4e-25 119.4 95 61.1
BcaB02g08480 Brassica carinata HOM05D003508 ORTHO05D004579 1.4e-25 119.4 95 62.1
BcaC02g09078 Brassica carinata HOM05D003508 ORTHO05D004579 1.4e-25 119.4 95 62.1
A04p05510 Brassica napus HOM05D003508 ORTHO05D004579 1.4e-25 119.4 95 62.1
C04p38200 Brassica napus HOM05D003508 ORTHO05D004579 1.4e-25 119.4 95 62.1
BolC4t25395H Brassica oleracea HOM05D003508 ORTHO05D004579 1.4e-25 119.4 95 62.1
BraA04t16251Z Brassica rapa HOM05D003508 ORTHO05D004579 1.4e-25 119.4 95 62.1
Carub.0004s2070 Capsella rubella HOM05D003508 ORTHO05D004579 1.4e-25 119.4 95 62.1
Eucgr.J00991 Eucalyptus grandis HOM05D003508 ORTHO05D004579 1.4e-25 119.4 94 63.8
Sp5g08150 Schrenkiella parvula HOM05D003508 ORTHO05D004579 1.4e-25 119.4 95 62.1
CARHR164170 Cardamine hirsuta HOM05D003508 ORTHO05D004579 1.9e-25 119.0 95 61.1
Nn6g34927 Nelumbo nucifera HOM05D003508 ORTHO05D004579 1.9e-25 119.0 95 62.1
Sabra10G0186100 Salix brachista HOM05D003508 ORTHO05D004579 1.9e-25 119.0 97 61.9
Solyc11g007020.2 Solanum lycopersicum HOM05D003508 ORTHO05D004579 1.9e-25 119.0 97 61.9
Sopen11g002940 Solanum pennellii HOM05D003508 ORTHO05D004579 1.9e-25 119.0 97 61.9
vmacro10305 Vaccinium macrocarpon HOM05D003508 ORTHO05D004579 1.9e-25 119.0 97 61.9
Gorai.013G012400 Gossypium raimondii HOM05D003508 ORTHO05D004579 2.5e-25 118.6 95 61.1
Aa31sc26G40 Aethionema arabicum HOM05D003508 ORTHO05D004579 3.2e-25 118.2 95 61.1
Aa31sc79G100 Aethionema arabicum HOM05D003508 ORTHO05D004579 3.2e-25 118.2 95 61.1
A09p47250 Brassica napus HOM05D003508 ORTHO05D004579 3.2e-25 118.2 95 61.1
BolC8t50554H Brassica oleracea HOM05D003508 ORTHO05D004579 3.2e-25 118.2 95 61.1
BraA09t40187Z Brassica rapa HOM05D003508 ORTHO05D004579 3.2e-25 118.2 95 61.1
Thhalv10010411m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 3.2e-25 118.2 95 61.1
Gohir.A13G010700 Gossypium hirsutum HOM05D003508 ORTHO05D004579 3.2e-25 118.2 95 61.1
Potri.010G237900 Populus trichocarpa HOM05D003508 ORTHO05D004579 3.2e-25 118.2 100 61.0
COL.COLO4_24552 Corchorus olitorius HOM05D003508 ORTHO05D004579 4.2e-25 117.9 95 61.1
Thhalv10023484m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 4.2e-25 117.9 95 61.1
Manes.07G087500 Manihot esculenta HOM05D003508 ORTHO05D004579 4.2e-25 117.9 95 62.1
Hund11567 Selenicereus undatus HOM05D003508 ORTHO05D004579 4.2e-25 117.9 95 63.2
Thecc.10G106000 Theobroma cacao HOM05D003508 ORTHO05D004579 4.2e-25 117.9 95 63.2
TAR633G0880 Trochodendron aralioides HOM05D003508 ORTHO05D004579 4.2e-25 117.9 100 58.0
Potri.008G021100 Populus trichocarpa HOM05D003508 ORTHO05D004579 5.5e-25 117.5 93 64.5
TWI38G0289 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 5.5e-25 117.5 95 62.1
BcaNung06364 Brassica carinata HOM05D003508 ORTHO05D004579 7.1e-25 117.1 95 60.0
C08p29490 Brassica napus HOM05D003508 ORTHO05D004579 7.1e-25 117.1 95 60.0
Glyma.10G279800 Glycine max HOM05D003508 ORTHO05D004579 7.1e-25 117.1 100 59.0
Manes.10G058800 Manihot esculenta HOM05D003508 ORTHO05D004579 7.1e-25 117.1 95 61.1
PSO339G4868 Papaver somniferum HOM05D003508 ORTHO05D004579 9.3e-25 116.7 98 58.2
PSO384G2067 Papaver somniferum HOM05D003508 ORTHO05D004579 9.3e-25 116.7 98 58.2
Sabra08G0014400 Salix brachista HOM05D003508 ORTHO05D004579 9.3e-25 116.7 93 63.4
TWI63G0607 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 9.3e-25 116.7 95 62.1
AT3G54250 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 1.2e-24 116.3 95 60.0
Duzib106G0726 Durio zibethinus HOM05D003508 ORTHO05D004579 1.2e-24 116.3 95 61.1
GSVIVG01011287001 Vitis vinifera HOM05D003508 ORTHO05D004579 1.2e-24 116.3 95 60.0
Os02g0107200 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 1.6e-24 115.9 97 60.8
Os02g0109100 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 1.6e-24 115.9 97 60.8
SGA_v2.0_scaffold62G21342 Striga asiatica HOM05D003508 ORTHO05D004579 1.6e-24 115.9 95 57.9
Migut.F00911 Erythranthe guttata HOM05D003508 ORTHO05D004579 2.7e-24 115.2 95 58.9
PGR044G1695 Punica granatum HOM05D003508 ORTHO05D004579 2.7e-24 115.2 93 62.4
THA.LOC104824218 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 2.7e-24 115.2 97 57.7
unitig_736.g22527 Utricularia gibba HOM05D003508 ORTHO05D004579 3.5e-24 114.8 95 57.9
SalBow6G1879 Salvia bowleyana HOM05D003508 ORTHO05D004579 4.6e-24 114.4 95 57.9
AUR62007446 Chenopodium quinoa HOM05D003508 ORTHO05D004579 6.0e-24 114.0 95 58.9
THA.LOC104811335 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 6.0e-24 114.0 93 61.3
Rhsim09G0142500 Rhododendron simsii HOM05D003508 ORTHO05D004579 7.9e-24 113.6 97 61.9
ClCG05G021710 Citrullus lanatus HOM05D003508 ORTHO05D004579 1.0e-23 113.2 95 57.9
EL10Ac5g12977 Beta vulgaris HOM05D003508 ORTHO05D004579 1.8e-23 112.5 95 58.9
CsaV3_5G035560 Cucumis sativus L. HOM05D003508 ORTHO05D004579 1.8e-23 112.5 95 56.8
Sed0023449 Sechium edule HOM05D003508 ORTHO05D004579 1.8e-23 112.5 95 57.9
MELO3C012357.2 Cucumis melo HOM05D003508 ORTHO05D004579 2.3e-23 112.1 95 56.8
HPP92_006808 Vanilla planifolia HOM05D003508 ORTHO05D004579 2.3e-23 112.1 103 54.4
SHI21271 Sapria himalayana HOM05D003508 ORTHO05D004579 3.0e-23 111.7 93 60.2
Zm00001eb056620 Zea mays HOM05D003508 ORTHO05D004579 3.0e-23 111.7 94 60.6
Zm00001eb257840 Zea mays HOM05D003508 ORTHO05D004579 3.0e-23 111.7 94 60.6
Ah.02g117270 Amaranthus hybridus HOM05D003508 ORTHO05D004579 3.9e-23 111.3 95 57.9
SGA_v2.0_scaffold7G04100 Striga asiatica HOM05D003508 ORTHO05D004579 5.1e-23 110.9 95 55.8
AUR62027288 Chenopodium quinoa HOM05D003508 ORTHO05D004579 6.7e-23 110.5 95 57.9
CDE04G3073 Ceratophyllum demersum HOM05D003508 ORTHO05D004579 8.7e-23 110.2 100 58.0
MSTRG.27535 Avicennia marina HOM05D003508 ORTHO05D004579 1.1e-22 109.8 95 54.7
ATR0081G016 Amborella trichopoda HOM05D003508 ORTHO05D004579 3.3e-22 108.2 92 60.9
Actinidia18595 Actinidia chinensis HOM05D003508 ORTHO05D004579 9.7e-22 106.7 86 64.0
SEGI_06330 Sequoiadendron giganteum HOM05D003508 ORTHO05D004579 1.3e-21 106.3 99 55.6
Pp3c5_15100 Physcomitrium patens HOM05D003508 ORTHO05D004579 2.4e-20 102.1 95 52.6
CSS0018426 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 4.1e-20 101.3 97 52.6
Pp3c6_12700 Physcomitrium patens HOM05D003508 ORTHO05D004579 9.0e-20 100.1 92 52.2
QL04p041546 Quercus lobata HOM05D003508 ORTHO05D004579 2.6e-19 98.6 59 79.7
CsaV3_7G016190 Cucumis sativus L. HOM05D003508 ORTHO05D004579 7.6e-19 97.1 124 43.5
Nn5g30614 Nelumbo nucifera HOM05D003508 ORTHO05D004579 2.2e-18 95.5 95 52.6
Rhsim03G0099000 Rhododendron simsii HOM05D003508 ORTHO05D004579 5.0e-18 94.4 137 41.6
AagrBONN_evm.TU.Sc2ySwM_117.3316 Anthoceros agrestis HOM05D003508 ORTHO05D004579 7.2e-17 90.5 87 54.0
CBR_g26358 Chara braunii HOM05D003508 ORTHO05D004579 1.2e-16 89.7 89 52.8
Eucgr.G02693 Eucalyptus grandis HOM05D003508 ORTHO05D004579 1.6e-16 89.4 94 44.7
SMO203G0120 Selaginella moellendorffii HOM05D003508 ORTHO05D004579 4.6e-16 87.8 92 51.1
Peaxi162Scf00173g00046 Petunia axillaris HOM05D003508 ORTHO05D004579 1.0e-15 86.7 95 51.6
Nn8g38869 Nelumbo nucifera HOM05D003508 ORTHO05D004579 3.9e-15 84.7 72 58.3
Haze_01395 Corylus avellana HOM05D003508 ORTHO05D004579 8.8e-15 83.6 74 51.4
MBI16_g04457_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 2.5e-14 82.0 98 48.0
Atru.chr5.1129 Acer truncatum HOM05D003508 ORTHO05D004579 5.7e-14 80.9 87 50.6
TAR636G0237 Trochodendron aralioides HOM05D003508 ORTHO05D004579 3.1e-12 75.1 70 57.1
BcaNung06362 Brassica carinata HOM05D003508 ORTHO05D004579 6.9e-12 73.9 62 59.7
PGSC0003DMG400011919 Solanum tuberosum HOM05D003508 ORTHO05D004579 2.2e-10 68.9 42 69.0
Actinidia36696 Actinidia chinensis HOM05D003508 ORTHO05D004579 2.6e-06 55.5 34 70.6
Haze_26564 Corylus avellana HOM05D003508 ORTHO05D004579 2.6e-06 55.5 82 39.0


User provided reference genes

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