Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0008811 Helianthus annuus HOM05D005108 ORTHO05D006171 2.4e-66 255.4 132 100.0
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 4.7e-17 91.7 52 94.2
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 1.1e-15 87.0 54 81.5
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 1.4e-13 80.1 54 81.5
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 1.8e-13 79.7 54 75.9
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 2.4e-13 79.3 54 72.2
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 3.1e-13 79.0 52 75.0
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 4.1e-13 78.6 52 75.0
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 5.3e-13 78.2 54 70.4
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 7.0e-13 77.8 55 70.9
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 9.1e-13 77.4 54 70.4
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 9.1e-13 77.4 54 70.4
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 9.1e-13 77.4 54 70.4
PSO675G3264 Papaver somniferum HOM05D005108 ORTHO05D006171 9.1e-13 77.4 52 69.2
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 9.1e-13 77.4 52 69.2
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 1.2e-12 77.0 54 68.5
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 1.2e-12 77.0 52 71.2
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 1.2e-12 77.0 55 70.9
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 1.2e-12 77.0 54 68.5
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 1.2e-12 77.0 54 68.5
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 1.2e-12 77.0 52 73.1
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 1.6e-12 76.6 52 71.2
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 1.6e-12 76.6 54 70.4
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 1.6e-12 76.6 54 66.7
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 2.0e-12 76.3 52 69.2
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 2.0e-12 76.3 52 67.3
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 2.0e-12 76.3 58 67.2
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 2.0e-12 76.3 54 68.5
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 2.6e-12 75.9 55 65.5
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 2.6e-12 75.9 54 68.5
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 2.6e-12 75.9 54 70.4
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 2.6e-12 75.9 58 65.5
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 2.6e-12 75.9 52 71.2
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 2.6e-12 75.9 52 71.2
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 3.5e-12 75.5 52 69.2
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 3.5e-12 75.5 54 66.7
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 3.5e-12 75.5 52 69.2
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 3.5e-12 75.5 52 67.3
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 4.5e-12 75.1 52 69.2
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 4.5e-12 75.1 52 67.3
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 4.5e-12 75.1 53 67.9
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 4.5e-12 75.1 52 69.2
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 4.5e-12 75.1 52 69.2
SalBow2G2216 Salvia bowleyana HOM05D005108 ORTHO05D006171 4.5e-12 75.1 52 71.2
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 5.9e-12 74.7 52 67.3
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 5.9e-12 74.7 54 68.5
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 5.9e-12 74.7 54 68.5
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 5.9e-12 74.7 54 66.7
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 5.9e-12 74.7 52 69.2
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 5.9e-12 74.7 52 65.4
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 7.7e-12 74.3 52 65.4
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 7.7e-12 74.3 51 70.6
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 7.7e-12 74.3 54 66.7
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 7.7e-12 74.3 54 63.0
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 7.7e-12 74.3 52 67.3
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 7.7e-12 74.3 52 67.3
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 7.7e-12 74.3 52 69.2
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 7.7e-12 74.3 54 64.8
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 1.0e-11 73.9 52 65.4
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 1.0e-11 73.9 52 65.4
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 1.0e-11 73.9 52 67.3
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 1.0e-11 73.9 52 65.4
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 1.3e-11 73.6 54 64.8
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 1.3e-11 73.6 60 61.7
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 1.7e-11 73.2 52 65.4
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 2.2e-11 72.8 60 61.7
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 2.2e-11 72.8 60 61.7
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 2.2e-11 72.8 54 64.8
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 2.2e-11 72.8 52 65.4
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 2.9e-11 72.4 52 65.4
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 2.9e-11 72.4 54 63.0
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 2.9e-11 72.4 54 63.0
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 2.9e-11 72.4 52 63.5
CDE02G2028 Ceratophyllum demersum HOM05D005108 ORTHO05D006171 3.8e-11 72.0 52 65.4
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 3.8e-11 72.0 60 63.3
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 3.8e-11 72.0 60 63.3
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 3.8e-11 72.0 60 63.3
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 3.8e-11 72.0 54 63.0
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 5.0e-11 71.6 54 63.0
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 5.0e-11 71.6 54 63.0
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 5.0e-11 71.6 54 63.0
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 5.0e-11 71.6 54 63.0
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 5.0e-11 71.6 60 63.3
ClCG08G010760 Citrullus lanatus HOM05D005108 ORTHO05D006171 6.5e-11 71.2 52 61.5
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 6.5e-11 71.2 53 64.2
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 6.5e-11 71.2 54 64.8
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 8.5e-11 70.9 54 64.8
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 8.5e-11 70.9 54 63.0
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 1.9e-10 69.7 52 63.5
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 3.2e-10 68.9 52 61.5
HPP92_019018 Vanilla planifolia HOM05D005108 ORTHO05D006171 4.2e-10 68.6 52 59.6
Hma1.2p1_0892F.1_g233240 Hydrangea macrophylla HOM05D005108 ORTHO05D006171 1.4e-08 63.5 69 50.7
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 2.3e-08 62.8 51 51.0
HanXRQChr14g0436981 Helianthus annuus HOM05D005160 ORTHO05D006127 3.0e-08 62.4 59 57.6
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 3.0e-08 62.4 52 51.9
SHI21238 Sapria himalayana HOM05D005108 ORTHO05D006171 2.0e-07 59.7 52 53.8
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 1.3e-06 57.0 52 53.8
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 2.8e-06 55.8 29 86.2
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 2.8e-06 55.8 52 48.1
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 6.3e-06 54.7 52 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4532 Anthoceros agrestis HOM05D005108 ORTHO05D006171 8.2e-06 54.3 54 44.4


User provided reference genes

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