Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 2.2e-177 625.5 321 100.0
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 6.9e-131 471.1 291 84.2
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 1.9e-128 463.0 310 80.0
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 1.5e-109 400.2 319 65.8
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.4e-107 392.9 302 67.2
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 1.2e-106 390.6 298 68.8
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 4.5e-106 388.7 302 66.9
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 1.9e-104 383.3 276 71.0
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 4.2e-104 382.1 270 70.4
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 1.8e-102 376.7 319 63.3
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 6.7e-102 374.8 317 63.1
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 6.7e-102 374.8 297 66.7
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 8.8e-102 374.4 270 71.5
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 8.8e-102 374.4 298 65.8
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 1.1e-101 374.0 272 71.3
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 1.1e-101 374.0 295 66.8
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 3.3e-101 372.5 273 70.0
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 3.3e-101 372.5 270 71.1
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 5.7e-101 371.7 275 70.5
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 7.4e-101 371.3 297 65.7
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 9.7e-101 370.9 318 62.9
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 2.2e-100 369.8 317 62.8
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 1.1e-99 367.5 297 64.3
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 1.4e-99 367.1 277 68.2
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 2.4e-99 366.3 317 60.3
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 3.1e-99 365.9 301 63.8
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 5.3e-99 365.2 302 64.6
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 6.9e-99 364.8 299 65.6
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 1.5e-98 363.6 304 64.8
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 2.6e-98 362.8 298 64.8
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 2.6e-98 362.8 270 68.1
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 3.4e-98 362.5 278 66.5
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 4.5e-98 362.1 276 66.3
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 5.9e-98 361.7 276 66.3
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 7.7e-98 361.3 290 67.6
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 1.0e-97 360.9 288 67.4
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 3.8e-97 359.0 316 63.3
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 3.8e-97 359.0 296 63.9
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 5.0e-97 358.6 267 67.8
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 8.5e-97 357.8 269 68.8
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 4.2e-96 355.5 261 70.5
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 7.2e-96 354.8 299 64.2
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 1.6e-95 353.6 312 60.6
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 1.6e-95 353.6 270 66.7
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 6.1e-95 351.7 267 67.4
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 6.1e-95 351.7 279 66.7
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 7.9e-95 351.3 295 63.1
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 7.9e-95 351.3 302 62.6
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.0e-94 350.9 265 69.4
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 1.0e-94 350.9 313 61.7
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.8e-94 350.1 265 68.3
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 3.0e-94 349.4 300 63.3
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 5.1e-94 348.6 269 66.9
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 1.5e-93 347.1 250 71.6
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 2.0e-93 346.7 270 65.9
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 2.0e-93 346.7 309 63.1
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 3.3e-93 345.9 282 66.3
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 9.7e-93 344.4 270 65.6
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 1.3e-92 344.0 292 61.3
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 1.3e-92 344.0 285 64.2
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 2.2e-92 343.2 277 65.3
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.8e-92 342.8 247 71.7
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 6.3e-92 341.7 300 60.3
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 8.2e-92 341.3 270 65.6
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 2.4e-91 339.7 281 63.7
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 3.1e-91 339.3 310 59.4
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 4.1e-91 339.0 316 57.3
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 4.1e-91 339.0 305 61.6
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 1.2e-90 337.4 397 50.1
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 2.0e-90 336.7 250 70.0
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 5.9e-90 335.1 315 58.7
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 7.7e-90 334.7 276 63.4
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 1.3e-89 334.0 266 67.7
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 1.3e-89 334.0 271 63.8
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 2.9e-89 332.8 294 60.2
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 8.5e-89 331.3 297 59.9
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 1.1e-88 330.9 236 70.8
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 2.5e-88 329.7 276 62.0
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 9.4e-88 327.8 307 60.9
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 3.6e-87 325.9 299 59.9
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 6.1e-87 325.1 274 63.1
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 1.4e-86 323.9 270 63.3
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 2.3e-86 323.2 273 60.8
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 2.3e-86 323.2 319 56.4
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 3.9e-86 322.4 265 62.3
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 6.7e-86 321.6 319 56.1
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 8.8e-86 321.2 262 63.7
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 4.4e-85 318.9 293 59.0
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 4.1e-83 312.4 270 62.2
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 7.0e-83 311.6 275 62.9
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 7.0e-83 311.6 251 64.5
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 1.0e-81 307.8 273 58.2
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 8.5e-81 304.7 300 57.0
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 8.5e-81 304.7 236 66.1
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 9.4e-80 301.2 226 67.3
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 1.0e-78 297.7 270 60.0
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 1.0e-78 297.7 229 67.7
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 1.4e-78 297.4 228 64.9
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 4.5e-74 282.3 186 74.7
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 5.9e-74 282.0 220 66.8
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 8.0e-71 271.6 301 53.5
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 4.4e-69 265.8 272 55.5
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 5.7e-69 265.4 290 55.5
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 7.0e-67 258.5 258 55.0
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 9.5e-64 248.1 187 66.8
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 4.0e-62 242.7 253 53.0
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 7.5e-61 238.4 207 61.4
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 1.4e-59 234.2 261 53.3
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 2.9e-57 226.5 252 51.6
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 2.8e-55 219.9 176 64.2
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 3.2e-51 206.5 255 47.5
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 1.7e-49 200.7 192 55.7
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 7.1e-43 178.7 201 47.8
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 3.0e-41 173.3 153 62.1
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 7.6e-37 158.7 129 61.2
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 4.6e-34 149.4 121 61.2
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 3.8e-28 129.8 178 47.2
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 2.1e-26 124.0 256 36.7
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 2.3e-25 120.6 120 54.2
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 1.5e-24 117.9 108 57.4
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 4.3e-24 116.3 99 55.6
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 7.8e-18 95.5 100 53.0
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 1.9e-16 90.9 72 58.3
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.9e-16 90.9 79 59.5
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 6.9e-14 82.4 130 43.8
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 1.3e-12 78.2 70 61.4
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 1.0e-09 68.6 65 64.6
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 9.6e-08 62.0 117 33.3
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 1.8e-06 57.8 65 58.5
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 3.1e-06 57.0 62 56.5


User provided reference genes

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