Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.2e-79 299.7 145 100.0
HPP92_028227 Vanilla planifolia HOM05D003501 ORTHO05D004388 8.7e-41 170.6 87 97.7
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 8.7e-33 144.1 340 34.4
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 5.5e-27 124.8 196 39.8
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 9.6e-24 114.0 115 57.4
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 6.2e-23 111.3 338 29.6
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 8.2e-23 110.9 340 28.8
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 1.1e-22 110.5 340 28.8
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 2.4e-22 109.4 340 28.5
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 3.1e-22 109.0 336 28.0
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 5.3e-22 108.2 340 28.8
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 9.0e-22 107.5 338 28.4
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 9.0e-22 107.5 315 28.6
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 1.2e-21 107.1 339 29.2
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.5e-21 106.7 49 100.0
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 2.0e-21 106.3 337 28.2
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 2.0e-21 106.3 341 28.7
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 3.4e-21 105.5 339 28.0
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 3.4e-21 105.5 347 28.0
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.4e-21 105.5 337 27.3
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 4.5e-21 105.1 337 27.3
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 4.5e-21 105.1 337 27.3
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 4.5e-21 105.1 337 27.3
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 4.5e-21 105.1 338 28.1
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 5.8e-21 104.8 339 28.0
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 5.8e-21 104.8 339 28.3
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 7.6e-21 104.4 339 28.0
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 7.6e-21 104.4 337 27.9
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 1.0e-20 104.0 340 28.2
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 1.0e-20 104.0 337 28.2
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 1.3e-20 103.6 295 28.1
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.3e-20 103.6 338 27.2
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.7e-20 103.2 337 27.6
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 2.9e-20 102.4 336 27.1
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.9e-20 102.4 49 95.9
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 4.9e-20 101.7 337 26.7
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 4.9e-20 101.7 338 26.9
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 4.9e-20 101.7 338 26.0
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 4.9e-20 101.7 337 27.3
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 4.9e-20 101.7 313 29.4
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 8.4e-20 100.9 337 26.7
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 8.4e-20 100.9 337 26.7
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 8.4e-20 100.9 337 26.7
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 8.4e-20 100.9 337 26.7
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 8.4e-20 100.9 338 26.9
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 1.4e-19 100.1 305 28.2
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.4e-19 100.1 337 26.1
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.4e-19 100.1 340 27.4
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 1.9e-19 99.8 337 26.4
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 1.9e-19 99.8 337 26.4
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 1.9e-19 99.8 70 71.4
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 4.2e-19 98.6 337 26.1
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 4.2e-19 98.6 335 26.3
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 4.2e-19 98.6 70 65.7
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 4.2e-19 98.6 70 65.7
HPP92_027916 Vanilla planifolia HOM05D003501 ORTHO05D004388 4.2e-19 98.6 54 92.6
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 5.5e-19 98.2 337 25.8
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 7.1e-19 97.8 70 68.6
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 9.3e-19 97.4 70 70.0
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 9.3e-19 97.4 339 27.1
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.2e-18 97.1 70 68.6
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 1.2e-18 97.1 70 68.6
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 1.2e-18 97.1 144 42.4
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 1.2e-18 97.1 71 67.6
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 1.2e-18 97.1 70 65.7
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 2.7e-18 95.9 70 65.7
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 2.7e-18 95.9 339 26.3
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 3.5e-18 95.5 71 63.4
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 3.5e-18 95.5 70 67.1
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 3.5e-18 95.5 339 26.0
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 6.0e-18 94.7 70 62.9
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 6.0e-18 94.7 142 43.7
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 6.0e-18 94.7 142 43.7
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 1.0e-17 94.0 71 63.4
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 1.0e-17 94.0 70 62.9
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 1.3e-17 93.6 70 64.3
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 2.3e-17 92.8 70 65.7
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 2.3e-17 92.8 70 65.7
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 2.3e-17 92.8 70 64.3
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 2.3e-17 92.8 70 64.3
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 2.3e-17 92.8 70 64.3
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 2.3e-17 92.8 70 65.7
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 3.0e-17 92.4 70 62.9
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 3.0e-17 92.4 49 81.6
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 3.9e-17 92.0 70 64.3
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 3.9e-17 92.0 49 83.7
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 5.1e-17 91.7 70 62.9
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 6.7e-17 91.3 49 83.7
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 6.7e-17 91.3 49 83.7
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 8.7e-17 90.9 71 62.0
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.1e-16 90.5 49 81.6
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.1e-16 90.5 71 66.2
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 1.1e-16 90.5 98 51.0
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 1.5e-16 90.1 70 62.9
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 1.9e-16 89.7 70 62.9
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 2.5e-16 89.4 70 64.3
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 2.5e-16 89.4 49 81.6
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 2.5e-16 89.4 70 62.9
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 2.5e-16 89.4 71 64.8
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 2.5e-16 89.4 71 64.8
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 2.5e-16 89.4 71 64.8
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 2.5e-16 89.4 71 64.8
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 3.3e-16 89.0 70 62.9
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 3.3e-16 89.0 70 62.9
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 4.3e-16 88.6 70 60.0
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 4.3e-16 88.6 69 60.9
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 5.7e-16 88.2 71 60.6
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 5.7e-16 88.2 49 79.6
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 7.4e-16 87.8 71 60.6
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 7.4e-16 87.8 70 61.4
CAN.G953.12 Capsicum annuum HOM05D003501 ORTHO05D004388 1.3e-15 87.0 71 64.8
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 1.3e-15 87.0 69 63.8
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.3e-15 87.0 71 62.0
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.3e-15 87.0 71 62.0
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 1.3e-15 87.0 49 79.6
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 2.8e-15 85.9 70 60.0
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 2.8e-15 85.9 70 60.0
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 2.8e-15 85.9 89 53.9
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 4.8e-15 85.1 49 77.6
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 4.8e-15 85.1 49 77.6
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 6.3e-15 84.7 71 60.6
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 8.2e-15 84.3 70 57.1
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 1.4e-14 83.6 49 75.5
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 1.4e-14 83.6 70 60.0
Lsat_1_v5_gn_2_70781 Lactuca sativa HOM05D003501 ORTHO05D004388 1.8e-14 83.2 71 63.4
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 1.8e-14 83.2 71 57.7
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 2.4e-14 82.8 54 66.7
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 2.4e-14 82.8 70 58.6
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 3.1e-14 82.4 49 79.6
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 3.1e-14 82.4 49 75.5
Actinidia15651 Actinidia chinensis HOM05D003501 ORTHO05D004388 6.9e-14 81.3 60 68.3
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.9e-14 81.3 69 59.4
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 9.0e-14 80.9 49 75.5
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-13 80.1 49 71.4
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-13 80.1 49 71.4
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 2.6e-13 79.3 70 58.6
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 3.4e-13 79.0 72 56.9
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 3.4e-13 79.0 49 73.5
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 4.5e-13 78.6 49 71.4
Lsat_1_v5_gn_2_114700 Lactuca sativa HOM05D003501 ORTHO05D004388 7.7e-13 77.8 63 66.7
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.7e-13 77.8 119 40.3
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 2.2e-12 76.3 49 67.3
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 2.9e-12 75.9 71 54.9
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.9e-12 75.9 49 69.4
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 3.8e-12 75.5 73 50.7
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.5e-12 74.7 49 67.3
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.9e-11 73.2 70 58.6
SEGI_12129 Sequoiadendron giganteum HOM05D003501 ORTHO05D004388 1.9e-11 73.2 64 54.7
EL10Ac2g02713 Beta vulgaris HOM05D003501 ORTHO05D004388 2.5e-11 72.8 63 55.6
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 4.2e-11 72.0 72 56.9
Lsat_1_v5_gn_6_85780 Lactuca sativa HOM05D003501 ORTHO05D004388 1.6e-10 70.1 63 61.9
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 6.1e-10 68.2 70 50.0
AL2G16720 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 7.9e-10 67.8 75 46.7
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 7.9e-10 67.8 42 73.8
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.0e-09 67.4 36 83.3
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.0e-09 67.4 36 83.3
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 2.5e-08 62.8 87 46.0
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 4.3e-08 62.0 44 61.4
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.3e-07 60.5 32 84.4
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 8.2e-07 57.8 30 80.0
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 1.8e-06 56.6 71 43.7
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.4e-06 56.2 32 81.2
QL93p1877_0036 Quercus lobata HOM05D003501 ORTHO05D004388 9.1e-06 54.3 47 57.4


User provided reference genes

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