Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 3.6e-140 501.5 245 100.0
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 7.9e-119 430.6 213 97.2
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 3.8e-105 385.2 213 83.6
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 1.9e-101 372.9 226 79.2
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 5.7e-101 371.3 216 81.5
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 7.4e-101 370.9 226 76.5
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 1.3e-100 370.2 213 82.2
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 1.6e-100 369.8 214 80.8
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 1.6e-100 369.8 214 80.8
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 1.1e-99 367.1 217 80.6
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 1.1e-99 367.1 214 80.8
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 2.4e-99 365.9 213 81.7
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 3.1e-99 365.5 209 81.8
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 6.9e-99 364.4 227 75.8
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 9.0e-99 364.0 210 82.4
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 1.5e-98 363.2 219 79.9
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 5.9e-98 361.3 213 80.8
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 1.0e-97 360.5 209 79.9
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 1.0e-97 360.5 209 79.9
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 1.3e-97 360.1 220 79.1
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 1.7e-97 359.8 221 78.7
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 2.2e-97 359.4 221 77.4
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 6.5e-97 357.8 234 72.2
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 8.5e-97 357.5 229 74.2
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 8.5e-97 357.5 223 76.2
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.4e-96 356.7 209 78.5
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 1.9e-96 356.3 229 74.7
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 4.2e-96 355.1 212 78.3
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 7.2e-96 354.4 217 78.8
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 9.3e-96 354.0 228 75.0
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 9.3e-96 354.0 217 77.0
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 9.3e-96 354.0 212 76.4
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 9.3e-96 354.0 227 73.1
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 9.3e-96 354.0 221 75.6
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 1.2e-95 353.6 229 74.7
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 1.2e-95 353.6 227 76.7
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 1.2e-95 353.6 236 72.0
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 2.1e-95 352.8 226 73.5
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 2.1e-95 352.8 212 75.5
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 2.1e-95 352.8 212 75.5
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.1e-95 352.8 223 74.4
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 2.7e-95 352.4 207 80.2
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 2.7e-95 352.4 214 79.4
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.7e-95 352.4 205 79.0
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 3.6e-95 352.1 227 73.1
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 3.6e-95 352.1 212 75.5
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 6.1e-95 351.3 219 78.1
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 1.3e-94 350.1 269 65.1
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 3.0e-94 349.0 224 75.0
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 3.0e-94 349.0 212 76.4
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 3.9e-94 348.6 208 79.3
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 3.9e-94 348.6 207 77.8
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 5.1e-94 348.2 207 78.3
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 6.7e-94 347.8 217 76.5
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 1.5e-93 346.7 211 80.1
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 1.9e-93 346.3 208 77.4
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.9e-93 346.3 210 78.6
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 1.9e-93 346.3 221 74.2
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 2.5e-93 345.9 225 75.1
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 3.3e-93 345.5 208 78.4
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 4.3e-93 345.1 208 78.4
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 9.7e-93 344.0 210 77.6
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 1.3e-92 343.6 207 77.8
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 1.3e-92 343.6 207 77.3
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 2.2e-92 342.8 218 71.1
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 3.7e-92 342.0 211 76.3
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 6.3e-92 341.3 232 73.3
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 6.3e-92 341.3 251 68.9
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 8.2e-92 340.9 219 76.7
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 8.2e-92 340.9 209 77.5
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.1e-91 340.5 217 75.6
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 1.1e-91 340.5 211 76.3
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 1.8e-91 339.7 228 72.8
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 3.1e-91 339.0 215 75.8
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 9.1e-91 337.4 215 72.6
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 2.0e-90 336.3 216 75.0
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 2.6e-90 335.9 208 76.4
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 4.5e-90 335.1 217 74.7
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 5.9e-90 334.7 219 75.3
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 7.7e-90 334.3 219 74.9
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 1.3e-89 333.6 218 74.8
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 1.3e-89 333.6 218 74.8
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 1.3e-89 333.6 218 74.8
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 1.7e-89 333.2 219 73.5
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 2.2e-89 332.8 219 74.9
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 2.2e-89 332.8 219 74.9
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 2.9e-89 332.4 211 75.8
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 2.9e-89 332.4 211 75.8
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 2.9e-89 332.4 211 75.8
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 3.8e-89 332.0 219 74.0
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 6.5e-89 331.3 219 73.1
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 6.5e-89 331.3 222 70.3
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 7.2e-88 327.8 211 75.4
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 3.9e-86 322.0 273 60.8
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.1e-85 320.5 211 70.6
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.4e-83 312.8 227 63.4
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 5.3e-83 311.6 216 66.7
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 9.1e-83 310.8 211 71.1
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 1.5e-82 310.1 214 71.5
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.0e-82 309.7 221 68.3
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 3.8e-81 305.4 190 76.3
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 1.1e-80 303.9 230 61.7
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 1.4e-80 303.5 181 77.9
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.9e-80 303.1 227 65.6
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 9.4e-80 300.8 191 74.3
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 1.0e-78 297.4 263 58.9
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 9.7e-77 290.8 180 75.0
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 9.7e-77 290.8 210 64.3
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 4.8e-76 288.5 201 63.7
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.3e-73 280.4 201 63.2
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 7.2e-72 274.6 212 59.9
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 2.8e-68 262.7 210 58.1
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 1.2e-66 257.3 210 57.6
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 2.3e-62 243.0 152 73.7
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 5.4e-59 231.9 175 61.1
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 3.5e-58 229.2 141 76.6
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 7.7e-58 228.0 137 76.6
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.1e-56 224.2 127 81.9
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 4.4e-53 212.2 183 55.7
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 7.5e-53 211.5 221 48.9
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 6.3e-52 208.4 134 72.4
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 2.1e-47 193.4 208 47.6
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 2.1e-47 193.4 175 57.1
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 2.6e-45 186.4 212 50.9
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 2.9e-44 183.0 108 78.7
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 4.4e-37 159.1 100 71.0
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 3.7e-36 156.0 85 84.7
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 4.9e-36 155.6 177 46.3
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.9e-35 153.7 177 45.8
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.2e-34 151.0 177 45.2
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.9e-33 146.0 177 44.6
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 7.3e-32 141.7 97 74.2
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 4.7e-31 139.0 112 64.3
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.5e-29 134.0 168 44.0
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 4.4e-29 132.5 78 79.5
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 7.5e-29 131.7 177 41.2
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 9.9e-29 131.3 77 77.9
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.6e-25 118.6 177 36.7
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 2.5e-24 116.7 164 43.9
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 9.5e-24 114.8 138 47.1
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 6.2e-23 112.1 202 32.2
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.8e-22 110.5 177 35.0
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.2e-21 107.8 177 33.3
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.0e-21 107.1 118 47.5
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 1.7e-17 94.0 72 61.1
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 8.7e-17 91.7 110 40.0
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 1.9e-11 73.9 160 30.0
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 9.3e-11 71.6 177 28.2
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.9e-09 66.2 102 35.3
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.1e-07 60.5 34 76.5
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 1.8e-06 57.4 67 43.3
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 6.9e-06 55.5 57 49.1


User provided reference genes

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