Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025787 Vanilla planifolia HOM05D000104 ORTHO05D026582 9.0e-63 243.4 124 100.0
HPP92_025795 Vanilla planifolia HOM05D000104 ORTHO05D026582 9.0e-63 243.4 124 100.0
TAR375G0536 Trochodendron aralioides HOM05D000104 ORTHO05D004024 4.0e-18 95.1 111 46.8
TAR374G1169 Trochodendron aralioides HOM05D000104 ORTHO05D004024 5.7e-17 91.3 111 45.0
MBI18_g02828_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 9.8e-17 90.5 117 44.4
Thecc.01G357200 Theobroma cacao HOM05D000104 ORTHO05D004024 1.1e-15 87.0 105 45.7
Medtr8g030550 Medicago truncatula HOM05D000104 ORTHO05D004024 1.4e-15 86.7 106 40.6
Psat3g107600 Pisum sativum HOM05D000104 ORTHO05D004024 1.4e-15 86.7 105 43.8
Prupe.2G172900 Prunus persica HOM05D000104 ORTHO05D004024 1.4e-15 86.7 103 45.6
COL.COLO4_12730 Corchorus olitorius HOM05D000104 ORTHO05D004024 1.8e-15 86.3 116 40.5
Dinv32495 Davidia involucrata HOM05D000104 ORTHO05D004024 2.4e-15 85.9 111 41.4
MELO3C006101.2 Cucumis melo HOM05D000104 ORTHO05D004024 3.1e-15 85.5 109 47.7
CsaV3_3G008840 Cucumis sativus L. HOM05D000104 ORTHO05D004024 3.1e-15 85.5 109 46.8
Nn1g01574 Nelumbo nucifera HOM05D000104 ORTHO05D004024 3.1e-15 85.5 107 45.8
Sabra02G0127900 Salix brachista HOM05D000104 ORTHO05D004024 3.1e-15 85.5 108 41.7
Psat4g212400 Pisum sativum HOM05D000104 ORTHO05D004024 4.1e-15 85.1 111 41.4
Ca_23613_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 7.0e-15 84.3 106 46.2
PSO782G4172 Papaver somniferum HOM05D000104 ORTHO05D004024 7.0e-15 84.3 106 41.5
arahy.Tifrunner.gnm1.ann1.03HQ0D Arachis hypogaea HOM05D000104 ORTHO05D004024 1.2e-14 83.6 116 38.8
arahy.Tifrunner.gnm1.ann1.8BN0DB Arachis hypogaea HOM05D000104 ORTHO05D004024 1.2e-14 83.6 107 40.2
arahy.Tifrunner.gnm1.ann1.AXD4AC Arachis hypogaea HOM05D000104 ORTHO05D004024 1.2e-14 83.6 107 40.2
ClCG05G001450 Citrullus lanatus HOM05D000104 ORTHO05D004024 1.2e-14 83.6 109 45.9
Os02g0114000 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 1.2e-14 83.6 103 41.7
Actinidia20892 Actinidia chinensis HOM05D000104 ORTHO05D004024 1.6e-14 83.2 114 39.5
arahy.Tifrunner.gnm1.ann1.K947VD Arachis hypogaea HOM05D000104 ORTHO05D004024 1.6e-14 83.2 116 38.8
Nn6g33365 Nelumbo nucifera HOM05D000104 ORTHO05D004024 1.6e-14 83.2 108 42.6
PSO478G3174 Papaver somniferum HOM05D000104 ORTHO05D004024 1.6e-14 83.2 106 41.5
Glyma.07G069400 Glycine max HOM05D000104 ORTHO05D004024 2.0e-14 82.8 116 38.8
Manes.01G255300 Manihot esculenta HOM05D000104 ORTHO05D004024 2.0e-14 82.8 104 43.3
Zm00001eb229760 Zea mays HOM05D000104 ORTHO05D004024 2.0e-14 82.8 103 46.6
VMungo1383G0951 Vigna mungo HOM05D000104 ORTHO05D004024 3.5e-14 82.0 109 39.4
Gohir.A11G090000 Gossypium hirsutum HOM05D000104 ORTHO05D004024 4.5e-14 81.6 104 42.3
Psat5g241000 Pisum sativum HOM05D000104 ORTHO05D026582 4.5e-14 81.6 108 41.7
TPR.G16549 Trifolium pratense HOM05D000104 ORTHO05D004024 4.5e-14 81.6 120 38.3
Cfa003903 Carpinus fangiana HOM05D000104 ORTHO05D004024 5.9e-14 81.3 112 42.0
Ciclev10018438m.g Citrus clementina HOM05D000104 ORTHO05D004024 5.9e-14 81.3 105 42.9
Duzib268G0692 Durio zibethinus HOM05D000104 ORTHO05D004024 5.9e-14 81.3 105 42.9
Eucgr.D02305 Eucalyptus grandis HOM05D000104 ORTHO05D004024 5.9e-14 81.3 114 41.2
GSVIVG01026952001 Vitis vinifera HOM05D000104 ORTHO05D004024 5.9e-14 81.3 111 41.4
Glyma.09G257900 Glycine max HOM05D000104 ORTHO05D004024 7.7e-14 80.9 125 38.4
Gohir.D11G094400 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.0e-13 80.5 104 42.3
Gorai.007G100800 Gossypium raimondii HOM05D000104 ORTHO05D004024 1.0e-13 80.5 104 42.3
Lj3g0005670 Lotus japonicus HOM05D000104 ORTHO05D004024 1.0e-13 80.5 112 36.6
Glyma.18G234700 Glycine max HOM05D000104 ORTHO05D004024 1.3e-13 80.1 117 37.6
CDE02G0245 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 1.7e-13 79.7 114 38.6
Glyma.16G035100 Glycine max HOM05D000104 ORTHO05D004024 1.7e-13 79.7 113 37.2
Sabra14G0062700 Salix brachista HOM05D000104 ORTHO05D004024 1.7e-13 79.7 102 41.2
CANSAT56G1829 Cannabis sativa HOM05D000104 ORTHO05D004024 2.2e-13 79.3 110 39.1
MD07G1134800 Malus domestica HOM05D000104 ORTHO05D004024 2.2e-13 79.3 98 44.9
Potri.002G160900 Populus trichocarpa HOM05D000104 ORTHO05D004024 2.2e-13 79.3 104 41.3
Haze_15527 Corylus avellana HOM05D000104 ORTHO05D004024 2.9e-13 79.0 105 42.9
Manes.05G032800 Manihot esculenta HOM05D000104 ORTHO05D004024 2.9e-13 79.0 103 45.6
TPR.G37713 Trifolium pratense HOM05D000104 ORTHO05D004024 2.9e-13 79.0 111 41.4
vmacro20931 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 2.9e-13 79.0 79 43.0
VMungo0331G0955 Vigna mungo HOM05D000104 ORTHO05D004024 3.8e-13 78.6 113 39.8
CSS0043783 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004024 5.0e-13 78.2 113 38.9
Cpa.g.sc11.24 Carica papaya HOM05D000104 ORTHO05D004024 5.0e-13 78.2 109 42.2
Dinv43833 Davidia involucrata HOM05D000104 ORTHO05D004024 5.0e-13 78.2 101 43.6
QL04p053980 Quercus lobata HOM05D000104 ORTHO05D004024 5.0e-13 78.2 105 43.8
Gohir.A07G141800 Gossypium hirsutum HOM05D000104 ORTHO05D004024 6.5e-13 77.8 104 42.3
Rhsim07G0013500 Rhododendron simsii HOM05D000104 ORTHO05D004024 6.5e-13 77.8 102 44.1
Gohir.A12G108600 Gossypium hirsutum HOM05D000104 ORTHO05D004024 8.5e-13 77.4 106 42.5
Gorai.008G121100 Gossypium raimondii HOM05D000104 ORTHO05D004024 1.1e-12 77.0 106 41.5
MD01G1065800 Malus domestica HOM05D000104 ORTHO05D004024 1.1e-12 77.0 100 41.0
Hund16655 Selenicereus undatus HOM05D000104 ORTHO05D004024 1.1e-12 77.0 103 37.9
Atru.chr5.516 Acer truncatum HOM05D000104 ORTHO05D004024 1.5e-12 76.6 102 41.2
Gohir.D12G111700 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.5e-12 76.6 106 41.5
Lalb_Chr10g0096851 Lupinus albus HOM05D000104 ORTHO05D004024 1.5e-12 76.6 111 37.8
Phvul.010G100100 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 1.5e-12 76.6 108 40.7
Potri.014G086500 Populus trichocarpa HOM05D000104 ORTHO05D004024 1.5e-12 76.6 102 44.1
Ca_07936_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 1.9e-12 76.3 108 40.7
Sed0000619 Sechium edule HOM05D000104 ORTHO05D004024 1.9e-12 76.3 117 41.9
MSTRG.20843 Avicennia marina HOM05D000104 ORTHO05D004024 3.2e-12 75.5 117 40.2
DCAR_005356 Daucus carota HOM05D000104 ORTHO05D004024 3.2e-12 75.5 104 37.5
Lj7C510T14 Lonicera japonica HOM05D000104 ORTHO05D004024 3.2e-12 75.5 110 38.2
Phvul.008G061000 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 3.2e-12 75.5 117 38.5
Gorai.001G168700 Gossypium raimondii HOM05D000104 ORTHO05D004024 4.2e-12 75.1 104 41.3
Cc02_g38210 Coffea canephora HOM05D000104 ORTHO05D004024 5.5e-12 74.7 110 38.2
Sed0026227 Sechium edule HOM05D000104 ORTHO05D004024 7.2e-12 74.3 109 42.2
Lalb_Chr17g0339481 Lupinus albus HOM05D000104 ORTHO05D004024 9.4e-12 73.9 104 36.5
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 1.6e-11 73.2 106 41.5
RcHm_v2.0_Chr1g0356661 Rosa chinensis HOM05D000104 ORTHO05D004024 1.6e-11 73.2 102 39.2
CiPaw.02G032300 Carya illinoinensis HOM05D000104 ORTHO05D004024 2.1e-11 72.8 105 39.0
Gohir.D07G147500 Gossypium hirsutum HOM05D000104 ORTHO05D004024 2.1e-11 72.8 90 41.1
CDE06G2476 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 3.6e-11 72.0 70 45.7
vmacro13264 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 3.6e-11 72.0 98 39.8
MBI17_g33790_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 6.1e-11 71.2 108 39.8
TWI14G1411 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 6.1e-11 71.2 107 39.3
FAN03G1309 Fragaria x ananassa HOM05D000104 ORTHO05D004024 8.0e-11 70.9 115 37.4
FAN10G0475 Fragaria x ananassa HOM05D000104 ORTHO05D004024 8.0e-11 70.9 115 37.4
FAN10G3702 Fragaria x ananassa HOM05D000104 ORTHO05D004024 8.0e-11 70.9 115 37.4
Sc01g0003500 Simmondsia chinensis HOM05D000104 ORTHO05D004024 1.0e-10 70.5 105 40.0
FvH4_7g14720 Fragaria vesca HOM05D000104 ORTHO05D004024 1.4e-10 70.1 115 37.4
FAN01G0653 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.4e-10 70.1 115 37.4
FAN06G0929 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.4e-10 70.1 102 37.3
FAN06G2979 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.4e-10 70.1 102 37.3
THA.LOC104803063 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 1.8e-10 69.7 95 38.9
TWI23G0799 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 1.8e-10 69.7 109 40.4
DCAR_025198 Daucus carota HOM05D000104 ORTHO05D004024 2.3e-10 69.3 73 45.2
HPP92_022592 Vanilla planifolia HOM05D000104 ORTHO05D004024 3.0e-10 68.9 107 41.1
Thhalv10001280m.g Eutrema salsugineum HOM05D000104 ORTHO05D004024 4.0e-10 68.6 95 42.1
Aqoxy7G00269 Aquilegia oxysepala HOM05D000104 ORTHO05D004024 6.8e-10 67.8 104 39.4
AL4G45240 Arabidopsis lyrata HOM05D000104 ORTHO05D004024 6.8e-10 67.8 95 43.2
AT2G46020 Arabidopsis thaliana HOM05D000104 ORTHO05D004024 8.8e-10 67.4 96 42.7
CARHR141280 Cardamine hirsuta HOM05D000104 ORTHO05D004024 8.8e-10 67.4 95 42.1
MSTRG.17279 Avicennia marina HOM05D000104 ORTHO05D004024 1.2e-09 67.0 117 37.6
Ah.05g180470 Amaranthus hybridus HOM05D000104 ORTHO05D004024 1.5e-09 66.6 117 34.2
C04p72040 Brassica napus HOM05D000104 ORTHO05D004024 1.5e-09 66.6 95 40.0
CAN.G78.94 Capsicum annuum HOM05D000104 ORTHO05D004024 2.0e-09 66.2 120 35.8
BolC4t28700H Brassica oleracea HOM05D000104 ORTHO05D004024 2.6e-09 65.9 95 40.0
EL10Ac1g00397 Beta vulgaris HOM05D000104 ORTHO05D004024 3.4e-09 65.5 103 38.8
Carub.0004s2871 Capsella rubella HOM05D000104 ORTHO05D004024 3.4e-09 65.5 95 42.1
HanXRQChr16g0522331 Helianthus annuus HOM05D000104 ORTHO05D004024 3.4e-09 65.5 102 38.2
HanXRQChr16g0522411 Helianthus annuus HOM05D000104 ORTHO05D004024 3.4e-09 65.5 102 38.2
BcaC01g05099 Brassica carinata HOM05D000104 ORTHO05D004024 9.8e-09 63.9 103 38.8
A04p34220 Brassica napus HOM05D000104 ORTHO05D004024 9.8e-09 63.9 95 40.0
C03p30350 Brassica napus HOM05D000104 ORTHO05D004024 9.8e-09 63.9 103 38.8
BolC3t15384H Brassica oleracea HOM05D000104 ORTHO05D004024 9.8e-09 63.9 103 38.8
BraA03t11763Z Brassica rapa HOM05D000104 ORTHO05D004024 9.8e-09 63.9 103 38.8
Sp4g28080 Schrenkiella parvula HOM05D000104 ORTHO05D004024 9.8e-09 63.9 95 41.1
A03p25440 Brassica napus HOM05D000104 ORTHO05D004024 1.3e-08 63.5 103 38.8
AUR62022585 Chenopodium quinoa HOM05D000104 ORTHO05D004024 1.3e-08 63.5 105 38.1
Nitab4.5_0000583g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004024 1.3e-08 63.5 121 33.9
SalBow3G2941 Salvia bowleyana HOM05D000104 ORTHO05D004024 1.7e-08 63.2 106 36.8
BcaB01g03241 Brassica carinata HOM05D000104 ORTHO05D004024 2.2e-08 62.8 145 32.4
BraA04t18883Z Brassica rapa HOM05D000104 ORTHO05D004024 2.2e-08 62.8 95 40.0
AUR62004379 Chenopodium quinoa HOM05D000104 ORTHO05D004024 2.8e-08 62.4 105 37.1
HanXRQChr17g0562421 Helianthus annuus HOM05D000104 ORTHO05D004024 2.8e-08 62.4 100 33.0
Nitab4.5_0006018g0100 Nicotiana tabacum HOM05D000104 ORTHO05D004024 2.8e-08 62.4 121 33.1
unitig_22.g5347 Utricularia gibba HOM05D000104 ORTHO05D004024 3.7e-08 62.0 109 32.1
HanXRQChr04g0121221 Helianthus annuus HOM05D000104 ORTHO05D004024 4.9e-08 61.6 43 55.8
Lj1g0023113 Lotus japonicus HOM05D000104 ORTHO05D004024 4.9e-08 61.6 122 33.6
Lsat_1_v5_gn_7_4220 Lactuca sativa HOM05D000104 ORTHO05D004024 6.3e-08 61.2 43 53.5
Peaxi162Scf00020g00814 Petunia axillaris HOM05D000104 ORTHO05D004024 6.3e-08 61.2 107 32.7
Sopen01g038570 Solanum pennellii HOM05D000104 ORTHO05D004024 6.3e-08 61.2 119 34.5
Rhsim01G0162900 Rhododendron simsii HOM05D000104 ORTHO05D004024 1.1e-07 60.5 128 28.1
Solyc01g094800.4 Solanum lycopersicum HOM05D000104 ORTHO05D004024 1.4e-07 60.1 117 34.2
unitig_8.g3794 Utricularia gibba HOM05D000104 ORTHO05D004024 1.4e-07 60.1 75 40.0
Aa31LG1G27420 Aethionema arabicum HOM05D000104 ORTHO05D004024 2.4e-07 59.3 95 37.9
Lsat_1_v5_gn_4_35861 Lactuca sativa HOM05D000104 ORTHO05D004024 4.1e-07 58.5 43 55.8
ECA236G4125 Erigeron canadensis HOM05D000104 ORTHO05D004024 5.4e-07 58.2 73 39.7
ECA234G0162 Erigeron canadensis HOM05D000104 ORTHO05D004024 1.2e-06 57.0 89 37.1
SGA_v2.0_scaffold4G02298 Striga asiatica HOM05D000104 ORTHO05D004024 2.7e-06 55.8 111 35.1
Migut.B01772 Erythranthe guttata HOM05D000104 ORTHO05D004024 3.5e-06 55.5 106 33.0
THA.LOC104827600 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 7.7e-06 54.3 39 56.4


User provided reference genes

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