Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 1.1e-173 613.2 327 100.0
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 3.7e-100 369.0 306 65.0
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 4.9e-100 368.6 281 67.3
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 1.9e-99 366.7 290 68.6
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 6.0e-98 361.7 309 62.1
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 7.8e-98 361.3 293 67.2
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 1.7e-97 360.1 293 64.2
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 3.9e-97 359.0 264 71.2
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 5.1e-97 358.6 290 67.9
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 6.6e-97 358.2 307 64.2
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 1.1e-96 357.5 292 64.0
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 1.5e-96 357.1 269 71.0
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 2.5e-96 356.3 288 68.4
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 7.3e-96 354.8 257 72.4
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 7.3e-96 354.8 290 65.5
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 7.3e-96 354.8 289 65.4
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 1.2e-95 354.0 290 63.8
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.6e-95 353.6 258 74.4
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 2.8e-95 352.8 311 65.6
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 2.8e-95 352.8 268 70.5
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 2.8e-95 352.8 268 70.1
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 4.7e-95 352.1 267 71.5
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 5.2e-94 348.6 314 58.6
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 1.2e-93 347.4 301 65.4
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 1.2e-93 347.4 268 69.8
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 1.5e-93 347.1 290 67.2
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 2.0e-93 346.7 291 63.6
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 2.6e-93 346.3 293 64.8
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 2.6e-93 346.3 272 68.4
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 3.4e-93 345.9 295 65.4
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 1.7e-92 343.6 290 65.9
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.7e-92 343.6 258 69.4
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 2.2e-92 343.2 289 64.4
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 2.2e-92 343.2 249 73.5
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 2.9e-92 342.8 271 66.4
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 2.9e-92 342.8 267 68.2
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 3.8e-92 342.4 249 73.5
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 4.9e-92 342.0 292 64.4
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 4.9e-92 342.0 266 68.4
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 6.4e-92 341.7 258 70.5
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 8.4e-92 341.3 277 67.5
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 8.4e-92 341.3 337 59.6
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 1.1e-91 340.9 259 70.3
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 1.6e-90 337.0 288 65.3
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.6e-90 337.0 293 64.2
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 2.1e-90 336.7 259 69.5
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 2.7e-90 336.3 290 65.5
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 2.7e-90 336.3 259 69.1
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 6.0e-90 335.1 308 61.7
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 7.8e-90 334.7 249 68.7
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 1.3e-89 334.0 272 69.5
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 1.7e-89 333.6 293 62.5
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 2.3e-89 333.2 272 69.9
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 3.0e-89 332.8 286 62.6
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 6.6e-89 331.6 290 62.8
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 1.1e-88 330.9 270 68.5
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 5.6e-88 328.6 262 68.3
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 9.6e-88 327.8 264 65.9
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 1.3e-87 327.4 293 62.1
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 2.1e-87 326.6 289 63.7
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 4.8e-87 325.5 247 68.8
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 6.2e-87 325.1 263 65.0
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 6.2e-87 325.1 279 63.4
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 8.1e-87 324.7 281 65.8
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 1.4e-86 323.9 311 61.7
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 3.1e-86 322.8 263 65.0
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 5.3e-86 322.0 303 60.4
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 6.9e-86 321.6 305 59.0
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 9.0e-86 321.2 292 62.0
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 1.2e-85 320.9 261 65.1
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 2.6e-85 319.7 277 62.5
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 1.7e-84 317.0 277 61.4
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 2.9e-84 316.2 255 65.9
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 2.9e-84 316.2 260 65.8
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 6.4e-84 315.1 280 61.8
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 8.4e-84 314.7 298 58.1
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 1.1e-83 314.3 293 59.0
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 1.1e-83 314.3 294 59.5
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 1.4e-83 313.9 234 70.5
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 1.4e-83 313.9 321 58.6
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 2.4e-83 313.2 263 66.2
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 2.7e-82 309.7 294 60.2
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 1.3e-81 307.4 226 71.2
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 3.0e-81 306.2 250 66.4
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 3.9e-81 305.8 272 65.8
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 1.1e-80 304.3 297 58.2
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 1.5e-80 303.9 383 48.6
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 3.3e-80 302.8 262 65.3
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 5.6e-80 302.0 310 56.5
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 1.6e-79 300.4 310 56.1
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 4.8e-79 298.9 228 66.7
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 2.4e-78 296.6 241 63.5
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 1.5e-77 293.9 269 61.3
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 4.9e-76 288.9 225 66.7
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 6.4e-76 288.5 234 65.8
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 2.1e-74 283.5 291 56.7
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 4.6e-74 282.3 228 68.0
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 8.1e-71 271.6 184 73.9
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 1.4e-70 270.8 284 54.6
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 1.8e-70 270.4 290 53.1
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 5.1e-65 252.3 291 52.9
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 6.7e-65 251.9 292 52.7
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 4.3e-64 249.2 211 64.9
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 7.6e-61 238.4 251 52.6
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 1.3e-60 237.7 253 51.4
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 1.6e-58 230.7 324 48.1
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 2.1e-58 230.3 182 67.6
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 7.9e-58 228.4 260 53.5
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 5.7e-56 222.2 199 61.8
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 2.0e-53 213.8 251 49.4
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 1.7e-52 210.7 212 59.0
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 2.3e-41 173.7 217 44.7
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 1.7e-39 167.5 179 51.4
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 4.8e-39 166.0 143 65.7
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 3.2e-35 153.3 128 60.2
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 6.3e-31 139.0 125 56.0
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 5.2e-25 119.4 98 64.3
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 8.8e-25 118.6 233 36.9
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 3.4e-24 116.7 157 47.1
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 9.8e-24 115.2 116 59.5
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 2.2e-23 114.0 119 53.8
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.6e-18 97.8 78 65.4
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 2.2e-15 87.4 101 50.5
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 1.6e-13 81.3 71 63.4
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 1.3e-12 78.2 68 52.9
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 2.2e-07 60.8 68 52.9
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 2.4e-06 57.4 104 45.2
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 3.2e-06 57.0 64 56.2
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 4.1e-06 56.6 56 58.9
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 4.1e-06 56.6 34 67.6


User provided reference genes

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