Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 6.9e-274 946.8 516 100.0
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.1e-85 321.6 484 48.8
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 4.3e-82 309.7 329 54.4
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 4.9e-78 296.2 383 51.2
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 9.2e-77 292.0 360 48.3
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 1.0e-75 288.5 362 50.0
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 3.9e-75 286.6 349 50.4
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 3.9e-75 286.6 359 47.9
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 5.0e-75 286.2 342 50.0
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 6.6e-75 285.8 344 50.6
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 1.1e-74 285.0 327 50.5
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 4.3e-74 283.1 380 49.5
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 5.6e-74 282.7 365 46.8
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 7.3e-74 282.3 350 48.3
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 9.5e-74 282.0 339 49.0
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 8.0e-73 278.9 328 52.7
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 1.8e-72 277.7 371 48.0
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.3e-72 277.3 355 50.1
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 2.3e-72 277.3 332 48.8
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 1.2e-71 275.0 315 50.5
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.0e-71 274.2 357 48.7
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.4e-71 273.5 316 51.6
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 3.4e-71 273.5 345 47.8
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 5.8e-71 272.7 347 51.3
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 9.8e-71 271.9 327 50.8
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 1.3e-70 271.6 357 47.9
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.2e-70 270.8 356 48.0
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 2.2e-70 270.8 319 50.5
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 3.7e-70 270.0 363 52.6
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 3.7e-70 270.0 371 48.8
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 4.9e-70 269.6 324 50.0
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 8.3e-70 268.9 328 49.4
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.1e-69 268.5 354 49.4
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 2.1e-68 264.2 355 49.6
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 2.1e-68 264.2 339 45.7
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 2.7e-68 263.8 372 50.0
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 6.0e-68 262.7 363 46.6
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 1.3e-67 261.5 361 51.5
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 1.3e-67 261.5 372 44.4
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 8.6e-67 258.8 398 43.2
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 8.6e-67 258.8 358 50.3
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 1.1e-66 258.5 353 48.2
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 1.9e-66 257.7 345 46.1
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.9e-66 257.7 347 47.3
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 1.6e-65 254.6 341 46.3
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 3.6e-65 253.4 347 48.1
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 8.1e-65 252.3 390 44.6
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 1.8e-64 251.1 394 45.7
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 3.1e-64 250.4 355 47.0
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 3.1e-64 250.4 411 44.3
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 6.8e-64 249.2 360 48.6
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 6.8e-64 249.2 361 43.8
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 8.9e-64 248.8 350 49.4
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 8.9e-64 248.8 395 45.1
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 1.5e-63 248.1 358 51.1
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 2.6e-63 247.3 351 44.4
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 2.6e-63 247.3 340 45.6
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 5.8e-63 246.1 342 47.4
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 7.5e-63 245.7 350 49.1
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 9.9e-63 245.4 389 43.4
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 1.3e-62 245.0 349 48.7
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.3e-62 245.0 357 45.7
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 1.3e-62 245.0 328 46.3
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 1.7e-62 244.6 357 44.3
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 2.2e-62 244.2 351 43.0
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.2e-62 244.2 360 43.6
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 4.9e-62 243.0 349 45.6
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 6.4e-62 242.7 382 43.2
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.1e-61 241.9 331 45.9
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.1e-61 241.9 331 45.9
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 1.1e-61 241.9 336 44.0
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 2.4e-61 240.7 343 44.0
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 2.4e-61 240.7 325 47.7
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 3.2e-61 240.4 443 48.5
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 7.1e-61 239.2 353 43.3
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 1.6e-60 238.0 448 47.1
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 6.0e-60 236.1 363 49.3
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 6.0e-60 236.1 366 43.7
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 7.8e-60 235.7 359 47.6
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 1.3e-59 235.0 347 47.3
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 3.0e-59 233.8 324 45.7
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.0e-59 233.8 343 44.3
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.9e-59 233.4 339 44.8
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 5.1e-59 233.0 351 43.0
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 6.6e-59 232.6 349 48.7
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 6.6e-59 232.6 347 43.5
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 8.6e-59 232.3 363 46.8
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.9e-58 231.1 348 45.7
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.3e-58 229.9 314 44.9
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 7.3e-58 229.2 399 40.9
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 9.5e-58 228.8 243 53.5
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 9.5e-58 228.8 354 44.4
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 9.5e-58 228.8 409 38.6
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 9.5e-58 228.8 364 42.9
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 1.2e-57 228.4 372 40.6
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 2.8e-57 227.3 370 43.5
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 6.2e-57 226.1 131 77.1
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 2.4e-56 224.2 357 42.9
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 6.8e-56 222.6 260 53.5
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 1.2e-55 221.9 387 40.6
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 1.5e-55 221.5 348 43.4
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 2.0e-55 221.1 301 46.2
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 1.3e-54 218.4 366 43.4
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.9e-54 217.2 345 43.8
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 4.9e-54 216.5 370 43.0
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 6.4e-54 216.1 408 41.7
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 8.4e-54 215.7 376 39.6
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 1.1e-53 215.3 379 43.5
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 2.1e-52 211.1 122 77.0
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 2.7e-52 210.7 377 38.2
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 3.5e-52 210.3 335 42.1
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 4.6e-52 209.9 395 42.0
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 6.0e-52 209.5 235 51.5
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 1.0e-51 208.8 183 62.3
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.7e-51 208.0 272 47.1
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.9e-50 204.5 341 41.9
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 9.6e-50 202.2 155 64.5
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 2.1e-49 201.1 159 69.8
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 2.8e-49 200.7 337 42.7
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 2.8e-49 200.7 372 40.6
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 3.6e-49 200.3 300 42.0
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 4.8e-49 199.9 349 41.8
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 4.8e-49 199.9 377 42.2
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 6.2e-49 199.5 367 39.0
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 6.2e-49 199.5 303 42.6
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 1.4e-48 198.4 298 45.6
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 5.3e-48 196.4 214 52.8
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 1.2e-47 195.3 112 75.9
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.6e-47 194.1 394 40.1
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 2.6e-47 194.1 334 41.3
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 2.6e-47 194.1 334 41.3
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 1.9e-45 188.0 372 39.0
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 3.2e-45 187.2 380 38.7
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.3e-43 181.8 362 38.7
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 1.5e-42 178.3 373 36.2
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.9e-42 177.9 368 37.8
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 2.5e-42 177.6 367 37.9
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 6.2e-41 172.9 378 36.0
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 6.7e-35 152.9 293 45.4
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 8.7e-35 152.5 252 42.9
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 2.5e-34 151.0 248 42.7
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 2.5e-34 151.0 241 41.9
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 4.5e-31 140.2 274 39.8
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 3.0e-27 127.5 268 39.2
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 9.6e-26 122.5 81 70.4
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 1.3e-25 122.1 92 67.4
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 1.8e-24 118.2 157 45.9
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 2.1e-20 104.8 278 35.6
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 2.7e-20 104.4 272 40.1
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 1.6e-17 95.1 97 45.4
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 5.3e-16 90.1 152 42.8
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 1.2e-07 62.4 105 40.0
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 1.5e-07 62.0 92 40.2
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 4.5e-07 60.5 105 38.1
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 1.3e-06 58.9 94 36.2
Duzib150G1022 Durio zibethinus HOM05D001365 ORTHO05D001291 8.5e-06 56.2 116 31.9


User provided reference genes

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