Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 0.0e+00 1382.9 697 100.0
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 2.4e-229 799.3 730 57.8
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 5.3e-229 798.1 706 58.8
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 1.1e-226 790.4 705 58.4
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 1.1e-226 790.4 702 59.0
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 4.2e-226 788.5 697 59.5
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 6.1e-225 784.6 711 57.5
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 2.3e-224 782.7 709 57.7
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 2.3e-224 782.7 704 58.4
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 5.2e-224 781.6 702 59.4
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 6.7e-224 781.2 704 57.4
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 2.2e-222 776.2 705 58.4
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 2.2e-222 776.2 702 58.0
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 6.3e-222 774.6 705 58.3
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 6.3e-222 774.6 715 57.6
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 1.1e-221 773.9 704 57.4
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 1.4e-221 773.5 702 58.3
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 1.4e-221 773.5 706 58.8
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 1.4e-221 773.5 705 58.0
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 1.8e-221 773.1 700 58.1
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 3.1e-221 772.3 700 58.3
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 9.1e-221 770.8 713 56.7
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 2.0e-220 769.6 718 57.0
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 5.9e-220 768.1 713 56.9
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 7.7e-220 767.7 704 58.4
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 1.0e-219 767.3 704 57.7
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 2.9e-219 765.8 717 56.9
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 8.5e-219 764.2 708 58.3
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 1.9e-218 763.1 683 58.7
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.2e-218 762.3 714 56.4
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.2e-218 762.3 714 56.4
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 4.2e-218 761.9 692 58.2
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 7.2e-218 761.1 712 57.0
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 8.0e-217 757.7 696 58.6
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 8.0e-217 757.7 705 57.2
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 1.0e-216 757.3 704 57.2
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.4e-216 756.9 712 57.2
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 3.0e-216 755.7 701 57.1
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.2e-215 753.8 712 56.7
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.5e-215 753.4 706 56.2
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 8.3e-214 747.7 748 53.5
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 1.1e-213 747.3 708 56.9
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 3.1e-213 745.7 695 57.8
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 3.1e-213 745.7 690 57.5
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 4.1e-213 745.3 695 57.8
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 4.1e-213 745.3 729 55.3
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.6e-212 743.4 689 57.5
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 7.7e-212 741.1 687 57.8
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 6.5e-211 738.0 694 54.5
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.5e-210 736.9 682 57.0
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 2.5e-210 736.1 702 55.1
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 1.6e-209 733.4 715 55.0
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 1.6e-209 733.4 699 55.9
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 6.1e-209 731.5 694 56.8
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 6.8e-208 728.0 714 55.2
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 7.5e-207 724.5 720 55.3
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 1.7e-206 723.4 750 52.7
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 4.9e-206 721.8 702 55.0
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 6.3e-206 721.5 713 55.1
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 6.3e-206 721.5 684 55.0
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 8.3e-206 721.1 694 54.3
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 1.4e-205 720.3 677 56.0
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 5.4e-205 718.4 681 55.7
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 7.0e-205 718.0 698 54.2
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 2.7e-204 716.1 736 52.0
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 9.5e-202 707.6 689 55.6
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 2.1e-201 706.4 683 56.2
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 3.0e-200 702.6 679 55.2
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 7.5e-199 698.0 691 55.4
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 2.7e-196 689.5 821 48.1
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 1.0e-195 687.6 692 53.9
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 3.0e-195 686.0 676 53.8
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 1.1e-194 684.1 677 53.6
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 3.3e-194 682.6 682 52.6
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.3e-194 682.2 675 54.1
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 7.3e-194 681.4 676 54.3
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 1.4e-192 677.2 687 53.3
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.8e-192 676.8 676 53.4
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 6.8e-192 674.9 676 53.1
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 8.9e-192 674.5 676 53.3
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 3.4e-191 672.5 683 52.9
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 4.4e-191 672.2 676 53.6
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 7.5e-191 671.4 676 53.4
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 9.8e-191 671.0 681 52.7
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.0e-187 661.0 944 43.1
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 2.3e-187 659.8 950 42.6
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 3.0e-187 659.4 720 50.1
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 4.3e-186 655.6 639 55.6
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 5.6e-186 655.2 672 52.8
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 2.0e-183 646.7 700 49.6
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 1.9e-181 640.2 722 50.1
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 7.8e-180 634.8 609 55.5
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 1.7e-174 617.1 676 49.7
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 3.2e-173 612.8 691 51.4
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 6.9e-168 595.1 610 54.1
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 2.5e-154 550.1 471 60.1
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 9.6e-154 548.1 600 49.7
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 4.6e-148 529.3 725 43.0
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 2.3e-147 526.9 739 41.5
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 3.9e-147 526.2 670 44.6
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.5e-141 505.8 554 53.6
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 9.3e-133 478.4 519 51.3
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 5.5e-125 452.6 403 56.6
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 1.4e-123 448.0 381 57.2
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 5.1e-123 446.0 689 40.8
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 2.7e-87 327.4 405 44.4
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.9e-86 323.9 593 38.1
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.5e-85 321.6 396 46.7
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.5e-82 311.6 455 41.5
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 1.5e-77 295.0 305 53.4
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.9e-69 268.1 272 55.9
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 1.9e-69 268.1 681 31.9
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.2e-68 263.1 294 53.1
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 8.9e-67 259.2 262 55.0
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 1.5e-61 241.9 974 24.8
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 1.8e-59 235.0 279 53.0
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 8.1e-52 209.5 226 53.5
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 9.3e-48 196.1 150 65.3
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 9.3e-48 196.1 141 68.1
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 2.1e-47 194.9 156 57.7
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 3.9e-46 190.7 370 35.1
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 3.3e-45 187.6 127 67.7
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 9.6e-45 186.0 152 57.9
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 2.6e-42 177.9 677 26.7
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.7e-33 148.7 239 36.8
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 1.0e-22 112.8 150 42.7
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 1.3e-22 112.5 205 32.7
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.8e-22 112.1 178 38.2
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.4e-19 101.7 102 53.9
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 1.7e-17 95.5 95 51.6
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 3.8e-17 94.4 274 31.0
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.5e-16 91.7 101 48.5
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 1.4e-14 85.9 64 65.6
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 1.7e-09 68.9 101 34.7
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.1e-08 66.2 189 30.2
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 3.0e-06 58.2 128 28.1
Actinidia11567 Actinidia chinensis HOM05D005074 ORTHO05D006853 5.1e-06 57.4 103 36.9


User provided reference genes

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