Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 3545.4 1921 100.0
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2001.1 1986 60.4
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1898.2 1864 59.1
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1862.8 1846 58.6
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1848.6 1866 58.4
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1821.6 1879 57.4
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1820.4 1833 57.8
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1820.1 1899 56.4
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1818.9 1959 56.4
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1803.1 2000 56.6
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1795.4 1975 57.4
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1790.4 1973 56.6
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1785.4 1961 56.7
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1781.5 1814 57.2
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1778.1 1909 55.8
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1773.1 1814 57.1
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1771.9 1847 55.8
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1768.4 1847 55.7
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1765.7 1913 55.9
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1764.6 1904 55.8
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1763.0 1893 55.6
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1762.7 1954 56.7
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1760.7 1843 56.1
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1759.2 1864 55.8
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1755.7 1903 55.3
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1754.6 1875 56.2
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1754.2 1953 55.2
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1754.2 1877 55.7
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1751.5 1922 55.5
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1750.3 1880 55.6
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1744.9 1868 55.9
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1739.5 1861 54.9
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1739.2 2002 53.6
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1738.4 1882 55.7
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1738.0 1860 55.8
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1736.5 1846 56.0
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1735.7 1860 55.7
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1734.9 1843 55.6
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1734.9 1889 55.7
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1734.2 1844 55.3
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1733.4 1889 54.8
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1731.5 1884 54.6
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1730.3 1892 54.4
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1728.4 1682 60.2
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1728.0 1888 55.1
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1727.6 1840 55.1
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1726.8 1912 55.6
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1726.5 1884 54.2
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1721.4 1857 54.4
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1719.5 1867 55.3
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1717.2 1847 54.8
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1716.4 1841 55.5
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1714.9 1846 55.6
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1714.1 1838 55.6
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1713.4 1857 54.8
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1713.0 1878 55.6
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1702.2 1852 54.2
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1698.3 1990 53.7
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1698.3 1846 54.7
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1696.4 1941 54.5
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1694.9 1855 54.0
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1689.9 1874 54.4
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1683.7 1960 52.4
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1681.8 1801 55.3
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1674.4 1959 54.3
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1672.5 1865 53.4
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1660.6 1852 53.7
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1659.4 1858 53.4
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1658.7 1820 54.6
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1654.4 1862 53.3
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1652.5 1835 53.7
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1649.8 2009 52.8
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1646.7 1881 54.4
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1645.6 1853 53.5
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1644.0 1895 52.9
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1644.0 1916 52.7
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1629.0 1864 52.9
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1624.8 1812 53.6
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1624.4 1888 53.0
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1606.7 1947 52.2
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1606.3 1847 53.5
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1600.5 1792 55.9
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1595.5 1853 52.0
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1591.2 1832 51.1
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1580.1 1867 52.8
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1568.5 1869 51.3
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1554.7 1857 51.8
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1553.1 1846 50.7
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1513.0 1909 50.9
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1506.1 1967 49.9
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1473.4 1945 48.0
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1451.4 1925 47.5
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1446.8 1918 46.8
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1445.6 1957 47.3
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1445.3 1918 47.2
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1442.6 1960 46.7
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1439.9 1955 47.2
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1436.4 1962 47.6
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1431.0 1895 46.4
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1428.7 1928 47.4
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1426.4 1915 46.4
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1424.8 1738 51.1
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1424.1 1940 47.1
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1422.9 1932 47.0
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1422.1 1913 46.7
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1411.0 1932 46.9
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1411.0 1932 46.9
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1350.5 1490 56.7
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1338.2 1969 45.7
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1329.7 1894 46.4
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1329.7 1894 46.4
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1312.4 1863 45.8
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1251.9 1831 45.2
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1224.2 1798 44.5
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1206.4 1121 61.1
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1147.1 1262 55.7
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1128.6 1372 50.1
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1117.4 1819 42.6
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1104.4 1041 61.0
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1102.8 1249 55.2
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.7e-277 960.7 930 58.7
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 2.3e-266 923.7 1553 42.2
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 3.6e-243 846.7 945 54.4
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 4.7e-243 846.3 865 57.8
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 2.6e-241 840.5 872 57.2
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 2.8e-235 820.5 1635 36.8
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 6.8e-234 815.8 786 60.3
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 1.2e-230 805.1 1320 44.5
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 4.7e-227 793.1 1348 43.8
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 6.4e-208 729.6 1849 32.8
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 6.0e-206 723.0 803 55.0
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 4.0e-186 657.1 647 56.1
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 6.1e-174 616.7 654 53.1
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.7e-164 583.6 509 59.9
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 5.0e-152 543.9 715 45.9
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.3e-144 519.2 618 50.2
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 4.7e-142 510.8 505 55.8
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.3e-139 500.4 338 71.0
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.9e-119 435.6 417 56.1
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.5e-119 435.3 419 55.6
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.2e-100 373.2 1014 30.5
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 4.3e-95 354.8 463 47.5
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.5e-65 255.4 469 37.5
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 4.3e-63 248.4 485 39.0
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 4.3e-63 248.4 522 33.5
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.2e-62 246.1 226 61.1
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 3.1e-61 242.3 838 30.9
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 1.2e-60 240.4 422 41.7
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.5e-55 223.4 194 63.4
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.5e-55 223.4 161 67.1
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.9e-43 182.6 183 52.5
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.7e-41 175.3 435 32.4
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 5.2e-40 171.8 616 28.9
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 7.2e-34 151.4 235 48.1
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.1e-26 127.5 189 61.9
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 6.1e-17 95.1 195 40.0
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 4.5e-12 79.0 83 49.4
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.3e-11 77.4 63 58.7
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.1e-10 74.3 47 63.8
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 1.9e-10 73.6 96 45.8
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 9.5e-10 71.2 84 46.4
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 3.1e-08 66.2 33 78.8
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 5.2e-08 65.5 91 49.5
MBI14_g11886_MAGBIO Magnolia biondii HOM05D056533 ORTHO05D018021 7.5e-07 61.6 41 75.6
MBI08_g04317_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D018021 9.8e-07 61.2 41 75.6
MBI05_g22526_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D018021 2.2e-06 60.1 41 73.2
MBI05_g34595_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 2.2e-06 60.1 41 73.2
MBI17_g23594_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D018021 4.9e-06 58.9 41 73.2


User provided reference genes

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