Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 8.8e-66 253.4 126 100.0
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.3e-44 181.8 97 90.7
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 6.4e-40 167.5 122 73.8
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 7.1e-39 164.1 122 70.5
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 9.2e-39 163.7 122 70.5
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 9.2e-39 163.7 122 70.5
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.2e-38 163.3 122 71.3
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.1e-38 162.5 122 71.3
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 2.1e-38 162.5 122 70.5
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.1e-38 162.5 121 71.1
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 2.7e-38 162.2 122 68.9
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 6.0e-38 161.0 122 69.7
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 6.0e-38 161.0 122 68.9
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 6.0e-38 161.0 121 69.4
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 6.0e-38 161.0 121 69.4
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 7.8e-38 160.6 122 69.7
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 7.8e-38 160.6 122 69.7
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 7.8e-38 160.6 122 68.9
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 1.0e-37 160.2 122 69.7
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 1.0e-37 160.2 122 68.9
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 1.7e-37 159.5 122 68.0
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.7e-37 159.5 122 68.0
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.7e-37 159.5 122 69.7
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 1.7e-37 159.5 122 68.9
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.7e-37 159.5 122 68.9
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.7e-37 159.5 122 68.9
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 2.3e-37 159.1 122 69.7
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.0e-37 158.7 122 67.2
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.0e-37 158.7 122 67.2
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.0e-37 158.7 122 67.2
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 3.0e-37 158.7 122 67.2
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 3.0e-37 158.7 122 68.0
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 3.9e-37 158.3 122 68.9
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 3.9e-37 158.3 122 68.0
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 3.9e-37 158.3 122 69.7
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 3.9e-37 158.3 122 67.2
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 3.9e-37 158.3 122 69.7
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.9e-37 158.3 122 68.9
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.9e-37 158.3 122 68.9
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 3.9e-37 158.3 122 68.0
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 3.9e-37 158.3 122 67.2
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 5.1e-37 157.9 122 67.2
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 5.1e-37 157.9 122 67.2
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 5.1e-37 157.9 122 67.2
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 6.6e-37 157.5 122 66.4
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 6.6e-37 157.5 122 66.4
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 8.6e-37 157.1 122 69.7
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 8.6e-37 157.1 122 67.2
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 8.6e-37 157.1 122 68.0
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 1.1e-36 156.8 122 67.2
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.1e-36 156.8 122 68.0
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 1.1e-36 156.8 122 67.2
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 1.5e-36 156.4 122 68.0
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 1.9e-36 156.0 122 65.6
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 1.9e-36 156.0 122 68.0
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.5e-36 155.6 122 66.4
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 2.5e-36 155.6 122 65.6
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.5e-36 155.6 122 67.2
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 2.5e-36 155.6 122 67.2
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.5e-36 155.6 122 67.2
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 3.3e-36 155.2 122 65.6
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.3e-36 154.8 122 67.2
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 4.3e-36 154.8 122 65.6
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 4.3e-36 154.8 122 66.4
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 4.3e-36 154.8 122 67.2
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 5.6e-36 154.5 122 67.2
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 5.6e-36 154.5 122 65.6
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 7.3e-36 154.1 122 65.6
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 7.3e-36 154.1 122 66.4
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 7.3e-36 154.1 122 66.4
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.3e-36 154.1 122 66.4
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.3e-36 154.1 122 66.4
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 7.3e-36 154.1 122 66.4
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 9.5e-36 153.7 122 66.4
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 9.5e-36 153.7 122 68.9
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 9.5e-36 153.7 122 68.9
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 9.5e-36 153.7 122 68.0
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 1.2e-35 153.3 122 64.8
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.6e-35 152.9 122 66.4
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.6e-35 152.9 122 65.6
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 1.6e-35 152.9 122 65.6
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.6e-35 152.9 122 65.6
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 1.6e-35 152.9 122 65.6
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 1.6e-35 152.9 122 65.6
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.6e-35 152.9 122 65.6
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 2.1e-35 152.5 122 63.9
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 2.8e-35 152.1 122 64.8
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 2.8e-35 152.1 122 64.8
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 3.6e-35 151.8 122 65.6
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 3.6e-35 151.8 122 64.8
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 3.6e-35 151.8 122 64.8
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 6.2e-35 151.0 122 66.4
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 8.1e-35 150.6 122 64.8
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 8.1e-35 150.6 122 64.8
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.4e-34 149.8 122 64.8
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 1.4e-34 149.8 122 64.8
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.4e-34 149.8 122 65.6
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 1.8e-34 149.4 122 64.8
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.3e-34 149.1 122 65.6
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 2.3e-34 149.1 122 63.9
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 3.1e-34 148.7 122 64.8
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 4.0e-34 148.3 120 66.7
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 5.2e-34 147.9 122 63.9
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.2e-33 146.7 122 64.8
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 1.5e-33 146.4 115 67.0
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 1.7e-32 142.9 122 63.9
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 2.9e-32 142.1 122 61.5
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 6.4e-32 141.0 122 63.1
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 8.4e-32 140.6 122 63.1
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 4.1e-31 138.3 102 69.6
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 5.4e-31 137.9 158 53.2
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 9.2e-31 137.1 116 62.9
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 1.6e-30 136.3 130 57.7
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.7e-30 135.6 119 58.8
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.9e-29 131.7 98 70.4
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.5e-28 129.8 118 60.2
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.8e-27 125.6 121 59.5
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 8.1e-27 124.0 122 56.6
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.4e-26 123.2 122 58.2
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 8.9e-26 120.6 122 55.7
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.2e-25 120.2 94 68.1
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 2.4e-23 112.5 97 64.9
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 5.4e-23 111.3 95 64.2
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 3.3e-20 102.1 89 60.7
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.3e-19 100.1 92 60.9
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 8.1e-19 97.4 137 46.7
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 8.1e-19 97.4 122 47.5
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.1e-18 97.1 125 45.6
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 7.6e-17 90.9 80 61.2
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 3.8e-16 88.6 124 41.9
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.2e-15 85.5 77 57.1
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 5.4e-15 84.7 123 42.3
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 4.5e-09 65.1 68 52.9
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 1.7e-08 63.2 46 67.4
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 7.1e-07 57.8 47 61.7
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 7.1e-07 57.8 47 61.7
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 2.1e-06 56.2 124 33.1


User provided reference genes

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