Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_020071 Vanilla planifolia HOM05D003434 ORTHO05D004465 1.1e-101 373.2 180 100.0
Psat6g028560 Pisum sativum HOM05D003434 ORTHO05D004465 2.7e-76 288.9 189 73.0
Psat6g129960 Pisum sativum HOM05D003434 ORTHO05D004465 1.0e-75 287.0 189 73.0
Lsat_1_v5_gn_9_57521 Lactuca sativa HOM05D003434 ORTHO05D004465 3.0e-75 285.4 180 75.6
HanXRQChr12g0374331 Helianthus annuus HOM05D003434 ORTHO05D004465 3.9e-75 285.0 178 77.0
Nn1g07032 Nelumbo nucifera HOM05D003434 ORTHO05D004465 5.1e-75 284.6 178 74.2
ECA236G4345 Erigeron canadensis HOM05D003434 ORTHO05D004465 8.7e-75 283.9 179 77.1
HanXRQChr10g0306991 Helianthus annuus HOM05D003434 ORTHO05D004465 1.5e-74 283.1 178 76.4
Lsat_1_v5_gn_7_105060 Lactuca sativa HOM05D003434 ORTHO05D004465 1.5e-74 283.1 180 75.6
TAR624G0430 Trochodendron aralioides HOM05D003434 ORTHO05D004465 1.5e-74 283.1 179 76.0
GSVIVG01028448001 Vitis vinifera HOM05D003434 ORTHO05D004465 1.5e-74 283.1 183 74.3
Ca_13044_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 1.9e-74 282.7 185 74.1
FAN25G0934 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.9e-74 282.7 182 74.2
Medtr7g069430 Medicago truncatula HOM05D003434 ORTHO05D004465 1.9e-74 282.7 182 74.2
Lj1A848T59 Lonicera japonica HOM05D003434 ORTHO05D004465 2.5e-74 282.3 184 75.5
MBI01_g15748_MAGBIO Magnolia biondii HOM05D003434 ORTHO05D004465 3.3e-74 282.0 185 75.1
Eucgr.F01099 Eucalyptus grandis HOM05D003434 ORTHO05D004465 4.3e-74 281.6 185 76.8
TAR626G1243 Trochodendron aralioides HOM05D003434 ORTHO05D004465 4.3e-74 281.6 179 74.9
FAN21G0310 Fragaria x ananassa HOM05D003434 ORTHO05D004465 5.7e-74 281.2 182 73.1
Hund24214 Selenicereus undatus HOM05D003434 ORTHO05D004465 5.7e-74 281.2 181 76.8
Aqoxy4G01062 Aquilegia oxysepala HOM05D003434 ORTHO05D004465 7.4e-74 280.8 183 75.4
Ca_05552_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 7.4e-74 280.8 187 72.7
Phvul.008G022950 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 9.6e-74 280.4 186 73.7
Phvul.011G077301 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 9.6e-74 280.4 186 73.7
TPR.G27919 Trifolium pratense HOM05D003434 ORTHO05D004465 9.6e-74 280.4 190 72.1
FvH4_3g20570 Fragaria vesca HOM05D003434 ORTHO05D004465 1.3e-73 280.0 182 74.2
FAN11G3195 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.3e-73 280.0 182 74.2
Medtr1g012990 Medicago truncatula HOM05D003434 ORTHO05D004465 1.3e-73 280.0 184 72.3
PGR083G2248 Punica granatum HOM05D003434 ORTHO05D004465 1.3e-73 280.0 182 74.7
Sc21g0001090 Simmondsia chinensis HOM05D003434 ORTHO05D004465 1.3e-73 280.0 182 75.3
CANSAT78G2387 Cannabis sativa HOM05D003434 ORTHO05D004465 1.6e-73 279.6 182 74.7
Manes.12G076100 Manihot esculenta HOM05D003434 ORTHO05D004465 2.1e-73 279.3 178 74.2
Lj1g0009928 Lotus japonicus HOM05D003434 ORTHO05D004465 2.8e-73 278.9 187 72.2
Phvul.008G022900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 2.8e-73 278.9 186 73.1
Rhsim06G0196400 Rhododendron simsii HOM05D003434 ORTHO05D004465 2.8e-73 278.9 180 75.6
Glyma.18G278000 Glycine max HOM05D003434 ORTHO05D004465 4.8e-73 278.1 183 73.2
arahy.Tifrunner.gnm1.ann1.L3HXPU Arachis hypogaea HOM05D003434 ORTHO05D004465 8.2e-73 277.3 189 72.5
arahy.Tifrunner.gnm1.ann1.LC97RS Arachis hypogaea HOM05D003434 ORTHO05D004465 8.2e-73 277.3 189 72.5
RcHm_v2.0_Chr5g0034581 Rosa chinensis HOM05D003434 ORTHO05D004465 8.2e-73 277.3 182 75.3
Lj8A158G80 Lonicera japonica HOM05D003434 ORTHO05D004465 1.1e-72 276.9 184 74.5
Lalb_Chr04g0258261 Lupinus albus HOM05D003434 ORTHO05D004465 1.1e-72 276.9 182 73.6
A03p39310 Brassica napus HOM05D003434 ORTHO05D004465 1.4e-72 276.6 181 74.0
BraA03t13081Z Brassica rapa HOM05D003434 ORTHO05D004465 1.4e-72 276.6 181 74.0
COL.COLO4_09433 Corchorus olitorius HOM05D003434 ORTHO05D004465 1.4e-72 276.6 186 74.7
Hma1.2p1_3282F.1_g334840 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.4e-72 276.6 179 73.7
Phvul.001G137800 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 1.4e-72 276.6 186 72.6
Phvul.001G138125 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 1.4e-72 276.6 186 72.6
EL10Ac9g22818 Beta vulgaris HOM05D003434 ORTHO05D004465 2.4e-72 275.8 187 71.7
BcaC01g03873 Brassica carinata HOM05D003434 ORTHO05D004465 2.4e-72 275.8 181 74.0
C03p47690 Brassica napus HOM05D003434 ORTHO05D004465 2.4e-72 275.8 181 74.0
Glyma.08G255000 Glycine max HOM05D003434 ORTHO05D004465 2.4e-72 275.8 181 73.5
Sp3g13710 Schrenkiella parvula HOM05D003434 ORTHO05D004465 2.4e-72 275.8 185 73.0
BolC3t17044H Brassica oleracea HOM05D003434 ORTHO05D004465 3.1e-72 275.4 181 74.0
FAN16G2559 Fragaria x ananassa HOM05D003434 ORTHO05D004465 3.1e-72 275.4 182 72.5
THA.LOC104818062 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 3.1e-72 275.4 183 72.7
PGSC0003DMG400012714 Solanum tuberosum HOM05D003434 ORTHO05D004465 4.1e-72 275.0 180 74.4
vmacro19412 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 4.1e-72 275.0 180 75.6
Nitab4.5_0000826g0070 Nicotiana tabacum HOM05D003434 ORTHO05D004465 5.3e-72 274.6 182 74.2
Nitab4.5_0001618g0180 Nicotiana tabacum HOM05D003434 ORTHO05D004465 5.3e-72 274.6 182 74.2
vmacro11838 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 5.3e-72 274.6 180 75.0
VMungo1383G3569 Vigna mungo HOM05D003434 ORTHO05D004465 5.3e-72 274.6 186 72.6
AL3G28010 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 6.9e-72 274.2 181 74.0
BcaB06g29579 Brassica carinata HOM05D003434 ORTHO05D004465 6.9e-72 274.2 184 71.7
CSS0016315 Camellia sinensis var. sinensis HOM05D003434 ORTHO05D004465 6.9e-72 274.2 181 74.6
Cc05_g12350 Coffea canephora HOM05D003434 ORTHO05D004465 6.9e-72 274.2 181 74.6
TWI38G2119 Tripterygium wilfordii HOM05D003434 ORTHO05D004465 6.9e-72 274.2 179 72.6
Ah.01g001850 Amaranthus hybridus HOM05D003434 ORTHO05D004465 9.0e-72 273.9 187 71.1
BcaB06g29576 Brassica carinata HOM05D003434 ORTHO05D004465 1.2e-71 273.5 186 72.0
A05p33960 Brassica napus HOM05D003434 ORTHO05D004465 1.2e-71 273.5 185 71.4
BolC5t33857H Brassica oleracea HOM05D003434 ORTHO05D004465 1.2e-71 273.5 186 72.0
BraA05t22218Z Brassica rapa HOM05D003434 ORTHO05D004465 1.2e-71 273.5 185 71.4
CiPaw.11G173200 Carya illinoinensis HOM05D003434 ORTHO05D004465 1.2e-71 273.5 180 73.3
Hma1.2p1_1789F.1_g302480 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.2e-71 273.5 179 73.7
Haze_09473 Corylus avellana HOM05D003434 ORTHO05D004465 1.5e-71 273.1 181 75.7
Haze_09477 Corylus avellana HOM05D003434 ORTHO05D004465 1.5e-71 273.1 181 75.7
Glyma.02G114000 Glycine max HOM05D003434 ORTHO05D004465 1.5e-71 273.1 185 72.4
Solyc04g016380.3 Solanum lycopersicum HOM05D003434 ORTHO05D004465 1.5e-71 273.1 180 73.9
MD11G1241800 Malus domestica HOM05D003434 ORTHO05D004465 2.0e-71 272.7 182 71.4
C01p49000 Brassica napus HOM05D003434 ORTHO05D004465 2.6e-71 272.3 183 73.8
BolC1t04864H Brassica oleracea HOM05D003434 ORTHO05D004465 2.6e-71 272.3 183 73.8
THA.LOC104815549 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 2.6e-71 272.3 183 72.1
C05p51700 Brassica napus HOM05D003434 ORTHO05D004465 4.5e-71 271.6 186 71.5
Thhalv10021159m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 4.5e-71 271.6 184 71.7
Ciclev10008977m.g Citrus clementina HOM05D003434 ORTHO05D004465 5.9e-71 271.2 179 72.6
CAN.G1237.13 Capsicum annuum HOM05D003434 ORTHO05D004465 7.6e-71 270.8 185 71.9
Oeu011677.2 Olea europaea HOM05D003434 ORTHO05D004465 7.6e-71 270.8 200 69.5
Hma1.2p1_2288F.1_g318950 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.0e-70 270.4 178 73.0
Sp1g39500 Schrenkiella parvula HOM05D003434 ORTHO05D004465 1.0e-70 270.4 184 71.7
Aa31LG8G2690 Aethionema arabicum HOM05D003434 ORTHO05D004465 1.3e-70 270.0 182 72.0
A01p38760 Brassica napus HOM05D003434 ORTHO05D004465 1.3e-70 270.0 183 73.2
Cfa020548 Carpinus fangiana HOM05D003434 ORTHO05D004465 1.3e-70 270.0 181 74.6
Gohir.D11G296500 Gossypium hirsutum HOM05D003434 ORTHO05D004465 1.3e-70 270.0 185 72.4
CARHR090510 Cardamine hirsuta HOM05D003434 ORTHO05D004465 1.7e-70 269.6 183 73.8
Sed0012815 Sechium edule HOM05D003434 ORTHO05D004465 1.7e-70 269.6 183 73.8
Haze_07077 Corylus avellana HOM05D003434 ORTHO05D004465 2.2e-70 269.2 181 74.6
Dinv08315 Davidia involucrata HOM05D003434 ORTHO05D002822 2.2e-70 269.2 160 78.8
Thecc.07G077100 Theobroma cacao HOM05D003434 ORTHO05D004465 2.9e-70 268.9 186 71.5
BcaB04g20924 Brassica carinata HOM05D003434 ORTHO05D004465 3.8e-70 268.5 183 71.0
CARHR043150 Cardamine hirsuta HOM05D003434 ORTHO05D004465 3.8e-70 268.5 185 71.4
Duzib213G0358 Durio zibethinus HOM05D003434 ORTHO05D004465 3.8e-70 268.5 187 72.2
Gohir.A11G282773 Gossypium hirsutum HOM05D003434 ORTHO05D004465 3.8e-70 268.5 185 72.4
CiPaw.12G120800 Carya illinoinensis HOM05D003434 ORTHO05D004465 5.0e-70 268.1 181 72.4
PSO170G0766 Papaver somniferum HOM05D003434 ORTHO05D004465 5.0e-70 268.1 178 72.5
Sed0008309 Sechium edule HOM05D003434 ORTHO05D004465 5.0e-70 268.1 183 73.8
ClCG03G016840 Citrullus lanatus HOM05D003434 ORTHO05D004465 6.5e-70 267.7 183 73.2
Thhalv10011666m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 8.5e-70 267.3 184 71.2
Lalb_Chr17g0340551 Lupinus albus HOM05D003434 ORTHO05D004465 8.5e-70 267.3 187 71.1
Oeu019344.1 Olea europaea HOM05D003434 ORTHO05D004465 8.5e-70 267.3 194 70.6
Gorai.007G319600 Gossypium raimondii HOM05D003434 ORTHO05D004465 1.1e-69 266.9 185 71.9
PSO017G4384 Papaver somniferum HOM05D003434 ORTHO05D004465 1.1e-69 266.9 183 70.5
SalBow4G3038 Salvia bowleyana HOM05D003434 ORTHO05D004465 1.1e-69 266.9 181 71.8
Peaxi162Scf00069g00118 Petunia axillaris HOM05D003434 ORTHO05D004465 1.4e-69 266.5 179 73.7
QL08p019759 Quercus lobata HOM05D003434 ORTHO05D004465 1.4e-69 266.5 180 71.7
Aa31LG10G2140 Aethionema arabicum HOM05D003434 ORTHO05D004465 1.9e-69 266.2 184 70.7
MELO3C015338.2 Cucumis melo HOM05D003434 ORTHO05D004465 1.9e-69 266.2 183 73.2
PSO832G4191 Papaver somniferum HOM05D003434 ORTHO05D004465 2.5e-69 265.8 183 69.4
Carub.0001s4208 Capsella rubella HOM05D003434 ORTHO05D004465 3.2e-69 265.4 185 71.4
Peaxi162Scf00130g00826 Petunia axillaris HOM05D003434 ORTHO05D004465 3.2e-69 265.4 181 72.4
Prupe.4G185500 Prunus persica HOM05D003434 ORTHO05D004465 5.5e-69 264.6 183 70.5
AUR62015117 Chenopodium quinoa HOM05D003434 ORTHO05D004465 7.2e-69 264.2 165 75.8
PSO210G2253 Papaver somniferum HOM05D003434 ORTHO05D004465 7.2e-69 264.2 183 69.4
Carub.0003s1518 Capsella rubella HOM05D003434 ORTHO05D004465 2.1e-68 262.7 183 69.4
Sabra11G0108200 Salix brachista HOM05D003434 ORTHO05D002822 2.1e-68 262.7 184 71.2
Potri.011G122200 Populus trichocarpa HOM05D003434 ORTHO05D004465 3.6e-68 261.9 184 70.7
unitig_0.g2416 Utricularia gibba HOM05D003434 ORTHO05D004465 4.6e-68 261.5 183 72.1
Sopen04g008470 Solanum pennellii HOM05D003434 ORTHO05D004465 6.1e-68 261.2 201 66.2
ATR0605G144 Amborella trichopoda HOM05D003434 ORTHO05D004465 7.9e-68 260.8 180 72.2
Duzib170G0474 Durio zibethinus HOM05D003434 ORTHO05D004465 7.9e-68 260.8 185 70.3
AT3G15460 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 1.0e-67 260.4 182 69.8
Cpa.g.sc80.31 Carica papaya HOM05D003434 ORTHO05D004465 1.8e-67 259.6 179 72.1
MD03G1224000 Malus domestica HOM05D003434 ORTHO05D004465 1.8e-67 259.6 182 69.2
Potri.001G403100 Populus trichocarpa HOM05D003434 ORTHO05D004465 3.9e-67 258.5 184 71.7
AL1G61260 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 1.5e-66 256.5 185 69.2
AT1G52930 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 2.5e-66 255.8 185 68.1
Migut.H01924 Erythranthe guttata HOM05D003434 ORTHO05D004465 3.3e-66 255.4 184 69.6
Nitab4.5_0000677g0140 Nicotiana tabacum HOM05D003434 ORTHO05D004465 5.7e-66 254.6 226 58.8
SGA_v2.0_scaffold9G04937 Striga asiatica HOM05D003434 ORTHO05D004465 7.4e-66 254.2 197 66.5
DCAR_019543 Daucus carota HOM05D003434 ORTHO05D004465 2.2e-65 252.7 178 67.4
CDE07G1591 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 6.3e-65 251.1 134 86.6
AUR62017579 Chenopodium quinoa HOM05D003434 ORTHO05D004465 1.4e-64 250.0 158 74.1
Os02g0591800 Oryza sativa ssp. japonica HOM05D003434 ORTHO05D004465 1.5e-63 246.5 196 62.2
Sabra16G0264800 Salix brachista HOM05D003434 ORTHO05D004465 3.4e-63 245.4 215 61.4
Zm00001eb245760 Zea mays HOM05D003434 ORTHO05D004465 1.0e-62 243.8 186 62.9
ClCG01G010880 Citrullus lanatus HOM05D003434 ORTHO05D004465 2.2e-62 242.7 239 56.1
Actinidia09989 Actinidia chinensis HOM05D003434 ORTHO05D004465 5.5e-61 238.0 141 78.0
Hma1.2p1_0400F.1_g144660 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 2.1e-60 236.1 179 64.8
CDE04G2432 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 2.8e-57 225.7 161 72.0
DCAR_020982 Daucus carota HOM05D003434 ORTHO05D004465 3.1e-56 222.2 178 62.4
SMO353G0304 Selaginella moellendorffii HOM05D003434 ORTHO05D004465 7.7e-55 217.6 170 60.6
BcaC09g48510 Brassica carinata HOM05D003434 ORTHO05D004465 1.4e-53 213.4 185 62.7
TPR.G685 Trifolium pratense HOM05D003434 ORTHO05D004465 4.2e-53 211.8 116 81.0
Pp3c16_10600 Physcomitrium patens HOM05D003434 ORTHO05D004465 7.9e-52 207.6 193 54.9
AagrBONN_evm.TU.Sc2ySwM_344.2838 Anthoceros agrestis HOM05D003434 ORTHO05D004465 1.8e-51 206.5 191 57.1
Gohir.A04G028400 Gossypium hirsutum HOM05D003434 ORTHO05D004465 5.2e-51 204.9 188 60.1
Psat3g183280 Pisum sativum HOM05D003434 ORTHO05D004465 9.7e-50 200.7 110 80.0
Phvul.001G137900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 1.7e-49 199.9 111 79.3
SalBow6G7052 Salvia bowleyana HOM05D003434 ORTHO05D004465 1.7e-49 199.9 184 57.1
Mapoly0044s0007 Marchantia polymorpha HOM05D003434 ORTHO05D004465 5.3e-48 194.9 179 55.3
BraA01t03909Z Brassica rapa HOM05D003434 ORTHO05D004465 5.9e-47 191.4 111 76.6
DCAR_019542 Daucus carota HOM05D003434 ORTHO05D004465 1.0e-46 190.7 136 67.6
Zm00001eb183430 Zea mays HOM05D003434 ORTHO05D004465 2.9e-46 189.1 111 75.7
CsaV3_2G014790 Cucumis sativus L. HOM05D003434 ORTHO05D004465 1.6e-44 183.3 142 65.5
CsaV3_7G022570 Cucumis sativus L. HOM05D003434 ORTHO05D004465 1.6e-44 183.3 142 65.5
Cre02.g095400 Chlamydomonas reinhardtii HOM05D003434 ORTHO05D004465 8.5e-38 161.0 143 52.4
Hund31009 Selenicereus undatus HOM05D003434 ORTHO05D023136 2.1e-36 156.4 113 72.6
Hund24225 Selenicereus undatus HOM05D003434 ORTHO05D023136 4.0e-35 152.1 162 54.9
MCO15G262 Micromonas commoda HOM05D003434 ORTHO05D004465 1.2e-34 150.6 128 51.6
Hma1.2p1_0687F.1_g203600 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 4.4e-34 148.7 111 65.8
Hund24220 Selenicereus undatus HOM05D003434 ORTHO05D004465 4.4e-34 148.7 113 69.9
Cfa025477 Carpinus fangiana HOM05D003434 ORTHO05D004465 4.8e-33 145.2 147 46.3
SEGI_35123 Sequoiadendron giganteum HOM05D003434 ORTHO05D004465 6.3e-33 144.8 122 59.0
Haze_26676 Corylus avellana HOM05D003434 ORTHO05D004465 1.9e-29 133.3 130 49.2
PRCOL_00005895 Prasinoderma coloniale HOM05D003434 ORTHO05D004465 8.0e-28 127.9 111 53.2
SEGI_09483 Sequoiadendron giganteum HOM05D003434 ORTHO05D004465 6.8e-27 124.8 68 80.9
CBR_g29800 Chara braunii HOM05D003434 ORTHO05D004465 5.9e-23 111.7 96 51.0
CsaV3_1G039130 Cucumis sativus L. HOM05D003434 ORTHO05D004465 5.6e-21 105.1 58 82.8
TPR.G10880 Trifolium pratense HOM05D003434 ORTHO05D004465 2.0e-15 86.7 58 70.7
SEGI_41466 Sequoiadendron giganteum HOM05D003434 ORTHO05D000001 5.0e-14 82.0 48 77.1
TPR.G38897 Trifolium pratense HOM05D003434 ORTHO05D004465 2.8e-12 76.3 74 55.4
CsaV3_5G020630 Cucumis sativus L. HOM05D003434 ORTHO05D004465 1.4e-11 73.9 39 87.2
MELO3C034411.2 Cucumis melo HOM05D003434 ORTHO05D000610 4.0e-11 72.4 76 52.6
MELO3C030248.2 Cucumis melo HOM05D003434 ORTHO05D000610 4.4e-10 68.9 42 73.8
Prupe.6G064500 Prunus persica HOM05D003434 ORTHO05D334372 3.2e-08 62.8 63 57.1
Os01g0148400 Oryza sativa ssp. japonica HOM05D003434 ORTHO05D300586 1.6e-07 60.5 127 28.3
TAR627G0311 Trochodendron aralioides HOM05D003434 ORTHO05D415141 2.3e-06 56.6 56 55.4


User provided reference genes

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