Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018526 Vanilla planifolia HOM05D002112 ORTHO05D005377 3.7e-123 444.9 223 100.0
PGR083G0908 Punica granatum HOM05D002112 ORTHO05D005377 4.4e-52 208.8 212 58.5
QL08p007027 Quercus lobata HOM05D002112 ORTHO05D005377 5.8e-52 208.4 212 58.5
Atru.chr1.3234 Acer truncatum HOM05D002112 ORTHO05D005377 1.3e-51 207.2 212 58.0
CANSAT01G0306 Cannabis sativa HOM05D002112 ORTHO05D005377 1.7e-51 206.8 201 58.7
Gohir.1Z049537 Gossypium hirsutum HOM05D002112 ORTHO05D005377 2.9e-51 206.1 212 58.0
TAR629G1251 Trochodendron aralioides HOM05D002112 ORTHO05D005377 2.9e-51 206.1 212 58.0
Duzib213G0660 Durio zibethinus HOM05D002112 ORTHO05D005377 3.7e-51 205.7 212 57.1
Thecc.07G030500 Theobroma cacao HOM05D002112 ORTHO05D005377 3.7e-51 205.7 212 57.1
Nitab4.5_0001907g0020 Nicotiana tabacum HOM05D002112 ORTHO05D005377 6.4e-51 204.9 206 57.8
QL06p008756 Quercus lobata HOM05D002112 ORTHO05D005377 6.4e-51 204.9 212 57.1
Aqoxy2G01186 Aquilegia oxysepala HOM05D002112 ORTHO05D005377 1.1e-50 204.1 212 56.1
TAR627G0566 Trochodendron aralioides HOM05D002112 ORTHO05D005377 1.1e-50 204.1 212 57.1
Nn1g07265 Nelumbo nucifera HOM05D002112 ORTHO05D005377 1.4e-50 203.8 212 56.6
Peaxi162Scf00493g00312 Petunia axillaris HOM05D002112 ORTHO05D005377 1.4e-50 203.8 206 57.3
Aqoxy1G02961 Aquilegia oxysepala HOM05D002112 ORTHO05D005377 1.9e-50 203.4 212 55.7
MBI06_g04395_MAGBIO Magnolia biondii HOM05D002112 ORTHO05D005377 1.9e-50 203.4 206 56.8
Ca_06342_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005377 2.4e-50 203.0 213 53.5
Ciclev10025758m.g Citrus clementina HOM05D002112 ORTHO05D005377 2.4e-50 203.0 206 57.8
Dinv22241 Davidia involucrata HOM05D002089 ORTHO05D005377 3.2e-50 202.6 212 56.6
Dinv40788 Davidia involucrata HOM05D002112 ORTHO05D005377 3.2e-50 202.6 206 56.8
LjContig00272g0002880 Lotus japonicus HOM05D002112 ORTHO05D005377 3.2e-50 202.6 212 54.7
CSS0048828 Camellia sinensis var. sinensis HOM05D002112 ORTHO05D005377 4.1e-50 202.2 206 56.3
HanXRQChr08g0233571 Helianthus annuus HOM05D002112 ORTHO05D005377 4.1e-50 202.2 212 56.6
Nitab4.5_0002649g0050 Nicotiana tabacum HOM05D002112 ORTHO05D005377 4.1e-50 202.2 206 57.3
CSS0017930 Camellia sinensis var. sinensis HOM05D002112 ORTHO05D005377 5.4e-50 201.8 206 55.8
ATR0772G119 Amborella trichopoda HOM05D002112 ORTHO05D005377 7.1e-50 201.4 206 56.3
arahy.Tifrunner.gnm1.ann1.SM06HE Arachis hypogaea HOM05D002112 ORTHO05D005377 7.1e-50 201.4 212 55.2
Glyma.14G021000 Glycine max HOM05D002112 ORTHO05D005377 7.1e-50 201.4 212 55.2
Hma1.2p1_0036F.1_g023230 Hydrangea macrophylla HOM05D002112 ORTHO05D005377 7.1e-50 201.4 206 55.8
Sed0025734 Sechium edule HOM05D002112 ORTHO05D005377 7.1e-50 201.4 207 56.5
TWI38G1671 Tripterygium wilfordii HOM05D002112 ORTHO05D005377 7.1e-50 201.4 212 56.1
GSVIVG01037706001 Vitis vinifera HOM05D002112 ORTHO05D005377 7.1e-50 201.4 206 56.8
Nn1g03399 Nelumbo nucifera HOM05D002112 ORTHO05D005377 9.2e-50 201.1 212 56.6
Oeu013123.1 Olea europaea HOM05D002112 ORTHO05D005377 9.2e-50 201.1 212 56.6
Os08g0248800 Oryza sativa ssp. japonica HOM05D002112 ORTHO05D005377 9.2e-50 201.1 212 57.1
ECA246G0156 Erigeron canadensis HOM05D002112 ORTHO05D005377 1.2e-49 200.7 212 56.1
Potri.001G357200 Populus trichocarpa HOM05D002112 ORTHO05D005377 1.2e-49 200.7 206 57.3
Zm00001eb178070 Zea mays HOM05D002112 ORTHO05D005377 1.6e-49 200.3 212 57.1
PGR031G2540 Punica granatum HOM05D002112 ORTHO05D005377 2.1e-49 199.9 212 56.6
PGR093G0005 Punica granatum HOM05D002112 ORTHO05D005377 2.1e-49 199.9 212 56.6
Rhsim06G0222300 Rhododendron simsii HOM05D002112 ORTHO05D005377 2.1e-49 199.9 206 56.3
CiPaw.11G193600 Carya illinoinensis HOM05D002112 ORTHO05D005377 2.7e-49 199.5 212 55.7
Gohir.D05G373500 Gossypium hirsutum HOM05D002112 ORTHO05D005377 2.7e-49 199.5 212 56.1
Gorai.009G442200 Gossypium raimondii HOM05D002112 ORTHO05D005377 2.7e-49 199.5 212 56.1
Medtr4g096900 Medicago truncatula HOM05D002112 ORTHO05D005377 2.7e-49 199.5 212 55.2
Haze_09725 Corylus avellana HOM05D002112 ORTHO05D005377 3.5e-49 199.1 206 56.8
Glyma.02G293500 Glycine max HOM05D002112 ORTHO05D005377 3.5e-49 199.1 206 55.8
Psat7g089200 Pisum sativum HOM05D002112 ORTHO05D005377 3.5e-49 199.1 212 55.2
arahy.Tifrunner.gnm1.ann1.ZASA6B Arachis hypogaea HOM05D002112 ORTHO05D005377 4.6e-49 198.7 206 56.8
CAN.G532.29 Capsicum annuum HOM05D002112 ORTHO05D005377 4.6e-49 198.7 206 56.3
Cc05_g14160 Coffea canephora HOM05D002112 ORTHO05D005377 4.6e-49 198.7 206 55.8
BraA01t03532Z Brassica rapa HOM05D002112 ORTHO05D005377 6.0e-49 198.4 206 56.3
MELO3C014189.2 Cucumis melo HOM05D002112 ORTHO05D005377 6.0e-49 198.4 206 55.8
Lj3A865T85 Lonicera japonica HOM05D002112 ORTHO05D005377 6.0e-49 198.4 212 55.2
Manes.15G067500 Manihot esculenta HOM05D002112 ORTHO05D005377 6.0e-49 198.4 203 57.1
PSO063G0678 Papaver somniferum HOM05D002112 ORTHO05D005377 6.0e-49 198.4 206 55.3
TPR.G2908 Trifolium pratense HOM05D002112 ORTHO05D005377 6.0e-49 198.4 212 55.2
vmacro22326 Vaccinium macrocarpon HOM05D002112 ORTHO05D005377 6.0e-49 198.4 206 56.3
arahy.Tifrunner.gnm1.ann1.MLP8YM Arachis hypogaea HOM05D002112 ORTHO05D005377 7.8e-49 198.0 212 55.2
Cfa020294 Carpinus fangiana HOM05D002112 ORTHO05D005377 7.8e-49 198.0 206 56.3
Prupe.4G221200 Prunus persica HOM05D002112 ORTHO05D005377 7.8e-49 198.0 212 55.2
Rhsim09G0178000 Rhododendron simsii HOM05D002112 ORTHO05D005377 7.8e-49 198.0 206 56.8
CDE12G0428 Ceratophyllum demersum HOM05D002112 ORTHO05D005377 1.0e-48 197.6 212 56.1
Ca_18260_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005377 1.0e-48 197.6 212 55.2
TPR.G1169 Trifolium pratense HOM05D002112 ORTHO05D005377 1.0e-48 197.6 212 55.2
CsaV3_3G004920 Cucumis sativus L. HOM05D002112 ORTHO05D005377 1.3e-48 197.2 206 55.8
Glyma.05G131400 Glycine max HOM05D002112 ORTHO05D005377 1.3e-48 197.2 212 54.7
Psat2g012520 Pisum sativum HOM05D002112 ORTHO05D005377 1.3e-48 197.2 212 54.7
Eucgr.F03492 Eucalyptus grandis HOM05D002112 ORTHO05D005377 1.7e-48 196.8 212 56.6
Lsat_1_v5_gn_5_3200 Lactuca sativa HOM05D002112 ORTHO05D005377 1.7e-48 196.8 206 55.8
Lj1A879T54 Lonicera japonica HOM05D002112 ORTHO05D005377 1.7e-48 196.8 212 55.7
Solyc11g006350.1 Solanum lycopersicum HOM05D002112 ORTHO05D005377 1.7e-48 196.8 206 54.4
Pp3c11_8230 Physcomitrium patens HOM05D002112 ORTHO05D005377 2.3e-48 196.4 212 55.7
MSTRG.14456 Avicennia marina HOM05D002112 ORTHO05D005377 3.0e-48 196.1 212 55.2
Migut.H01801 Erythranthe guttata HOM05D002112 ORTHO05D005377 3.0e-48 196.1 206 55.3
MD15G1397500 Malus domestica HOM05D002112 ORTHO05D005377 3.0e-48 196.1 212 54.7
Phvul.008G270600 Phaseolus vulgaris HOM05D002112 ORTHO05D005377 3.0e-48 196.1 206 54.9
AagrBONN_evm.TU.Sc2ySwM_368.189 Anthoceros agrestis HOM05D002112 ORTHO05D005377 3.9e-48 195.7 212 54.7
FvH4_4g09330 Fragaria vesca HOM05D002112 ORTHO05D005377 3.9e-48 195.7 228 50.9
Sp3g18360 Schrenkiella parvula HOM05D002112 ORTHO05D005377 3.9e-48 195.7 211 55.0
Cpa.g.sc12.257 Carica papaya HOM05D002112 ORTHO05D005377 5.1e-48 195.3 212 55.2
Medtr5g093570 Medicago truncatula HOM05D002112 ORTHO05D005377 5.1e-48 195.3 212 54.2
SGA_v2.0_scaffold120G32847 Striga asiatica HOM05D002112 ORTHO05D005377 5.1e-48 195.3 212 55.2
AT3G20330 Arabidopsis thaliana HOM05D002112 ORTHO05D005377 6.6e-48 194.9 207 55.1
BcaB04g20659 Brassica carinata HOM05D002112 ORTHO05D005377 6.6e-48 194.9 206 55.8
Sopen11g002250 Solanum pennellii HOM05D002112 ORTHO05D005377 6.6e-48 194.9 206 54.4
AL3G34050 Arabidopsis lyrata HOM05D002112 ORTHO05D005377 8.6e-48 194.5 207 55.1
Thhalv10020870m.g Eutrema salsugineum HOM05D002112 ORTHO05D005377 8.6e-48 194.5 207 55.1
RcHm_v2.0_Chr4g0402721 Rosa chinensis HOM05D002112 ORTHO05D005377 8.6e-48 194.5 206 54.9
RcHm_v2.0_Chr6g0264841 Rosa chinensis HOM05D002112 ORTHO05D005377 8.6e-48 194.5 212 54.7
SMO339G0015 Selaginella moellendorffii HOM05D002112 ORTHO05D005377 8.6e-48 194.5 206 55.8
BcaB06g26098 Brassica carinata HOM05D002112 ORTHO05D005377 1.1e-47 194.1 206 55.8
Lalb_Chr12g0209021 Lupinus albus HOM05D002112 ORTHO05D005377 1.1e-47 194.1 212 54.2
TWI39G1031 Tripterygium wilfordii HOM05D002112 ORTHO05D005377 1.1e-47 194.1 212 54.7
A05p28600 Brassica napus HOM05D002112 ORTHO05D005377 1.5e-47 193.7 206 55.3
BolC1t04335H Brassica oleracea HOM05D002112 ORTHO05D005377 1.5e-47 193.7 211 54.0
BraA05t21737Z Brassica rapa HOM05D002112 ORTHO05D005377 1.5e-47 193.7 206 55.3
PGSC0003DMG400000980 Solanum tuberosum HOM05D002112 ORTHO05D005377 1.5e-47 193.7 206 54.4
FvH4_7g16631 Fragaria vesca HOM05D002112 ORTHO05D005377 1.9e-47 193.4 212 54.2
FAN06G2468 Fragaria x ananassa HOM05D002112 ORTHO05D005377 1.9e-47 193.4 212 54.2
THA.LOC104817853 Tarenaya hassleriana HOM05D002112 ORTHO05D005377 1.9e-47 193.4 207 55.1
CARHR095980 Cardamine hirsuta HOM05D002112 ORTHO05D005377 2.5e-47 193.0 207 54.6
Lsat_1_v5_gn_7_113801 Lactuca sativa HOM05D002112 ORTHO05D005377 2.5e-47 193.0 207 54.1
BcaC09g48987 Brassica carinata HOM05D002112 ORTHO05D005377 3.3e-47 192.6 206 55.3
Carub.0003s2028 Capsella rubella HOM05D002112 ORTHO05D005377 3.3e-47 192.6 207 54.6
FAN01G2257 Fragaria x ananassa HOM05D002112 ORTHO05D005377 3.3e-47 192.6 212 54.2
Glyma.08G086000 Glycine max HOM05D002112 ORTHO05D005377 3.3e-47 192.6 212 53.8
AUR62015837 Chenopodium quinoa HOM05D002112 ORTHO05D005377 4.3e-47 192.2 212 54.7
BolC5t33119H Brassica oleracea HOM05D002112 ORTHO05D005377 5.6e-47 191.8 206 54.9
BcaC05g28317 Brassica carinata HOM05D002112 ORTHO05D005377 7.3e-47 191.4 206 54.4
C05p44010 Brassica napus HOM05D002112 ORTHO05D005377 7.3e-47 191.4 206 54.4
FAN03G2363 Fragaria x ananassa HOM05D002112 ORTHO05D005377 7.3e-47 191.4 212 53.8
FAN06G0459 Fragaria x ananassa HOM05D002112 ORTHO05D005377 7.3e-47 191.4 212 53.8
Sp6g12890 Schrenkiella parvula HOM05D002112 ORTHO05D005377 7.3e-47 191.4 211 53.1
AUR62020382 Chenopodium quinoa HOM05D002112 ORTHO05D005377 9.5e-47 191.0 212 54.2
C01p43760 Brassica napus HOM05D002112 ORTHO05D005377 1.2e-46 190.7 222 52.7
unitig_8.g4479 Utricularia gibba HOM05D002112 ORTHO05D005377 1.2e-46 190.7 206 53.9
EL10Ac4g07746 Beta vulgaris HOM05D002112 ORTHO05D005377 1.6e-46 190.3 206 52.9
FAN12G4101 Fragaria x ananassa HOM05D002112 ORTHO05D005377 1.6e-46 190.3 228 49.1
SHI26581 Sapria himalayana HOM05D002112 ORTHO05D005377 1.6e-46 190.3 212 51.4
Ah.06g182500 Amaranthus hybridus HOM05D002112 ORTHO05D005377 2.1e-46 189.9 206 53.4
ECA236G4434 Erigeron canadensis HOM05D002112 ORTHO05D005377 2.1e-46 189.9 207 53.6
Aa31LG10G3690 Aethionema arabicum HOM05D002112 ORTHO05D005377 3.6e-46 189.1 207 53.6
Pp3c1_7810 Physcomitrium patens HOM05D002112 ORTHO05D005377 3.6e-46 189.1 206 53.9
Sabra16G0235200 Salix brachista HOM05D002112 ORTHO05D005377 4.7e-46 188.7 206 55.3
Hund23211 Selenicereus undatus HOM05D002112 ORTHO05D005377 6.2e-46 188.3 206 52.9
Sc06g0004500 Simmondsia chinensis HOM05D002112 ORTHO05D005377 6.2e-46 188.3 212 52.8
CBR_g4282 Chara braunii HOM05D002112 ORTHO05D005377 1.1e-45 187.6 206 52.9
Mapoly0135s0050 Marchantia polymorpha HOM05D002112 ORTHO05D005377 1.1e-45 187.6 207 52.2
DCAR_013195 Daucus carota HOM05D002112 ORTHO05D005377 1.4e-45 187.2 206 52.9
HanXRQChr15g0470591 Helianthus annuus HOM05D002112 ORTHO05D005377 1.4e-45 187.2 210 52.9
ClCG10G005230 Citrullus lanatus HOM05D002112 ORTHO05D005377 4.0e-45 185.7 206 53.9
COL.COLO4_09707 Corchorus olitorius HOM05D002112 ORTHO05D005377 9.9e-44 181.0 200 52.0
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 2.2e-43 179.9 207 50.7
arahy.Tifrunner.gnm1.ann1.4VH6VS Arachis hypogaea HOM05D002112 ORTHO05D005377 1.1e-42 177.6 206 52.4
A01p34350 Brassica napus HOM05D002112 ORTHO05D005377 3.5e-41 172.6 207 51.7
PRCOL_00003403 Prasinoderma coloniale HOM05D002112 ORTHO05D005377 1.2e-38 164.1 203 45.3
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.8e-37 160.2 194 49.5
Cre02.g079700 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D005377 2.9e-35 152.9 205 43.9
MCO06G271 Micromonas commoda HOM05D002112 ORTHO05D005377 3.2e-34 149.4 206 44.7
Zm00001eb412930 Zea mays HOM05D002112 ORTHO05D005377 3.2e-34 149.4 178 53.4
Lsat_1_v5_gn_0_47481 Lactuca sativa HOM05D002112 ORTHO05D005377 1.3e-32 144.1 172 51.2
SEGI_29547 Sequoiadendron giganteum HOM05D002112 ORTHO05D005377 3.0e-32 142.9 196 47.4
FAN22G2117 Fragaria x ananassa HOM05D002112 ORTHO05D005377 7.6e-28 128.3 93 68.8
FAN07G1453 Fragaria x ananassa HOM05D002112 ORTHO05D005377 5.4e-26 122.1 198 43.4
VMungo0647G1381 Vigna mungo HOM05D002112 ORTHO05D005377 7.1e-26 121.7 74 77.0
ClCG04G002470 Citrullus lanatus HOM05D002112 ORTHO05D005377 4.8e-22 109.0 106 53.8
CAN.G1131.18 Capsicum annuum HOM05D002112 ORTHO05D005377 2.6e-20 103.2 70 71.4
CAN.G134.139 Capsicum annuum HOM05D002496 ORTHO05D002787 2.6e-20 103.2 70 72.9
Actinidia05072 Actinidia chinensis HOM05D002112 ORTHO05D005377 5.1e-16 89.0 200 36.0
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 6.7e-16 88.6 230 28.7
Lsat_1_v5_gn_3_138320 Lactuca sativa HOM05D002112 ORTHO05D005377 1.5e-15 87.4 145 43.4
Actinidia32273 Actinidia chinensis HOM05D002112 ORTHO05D005377 1.3e-08 64.3 40 77.5
VMungo0647G2153 Vigna mungo HOM05D002112 ORTHO05D005377 5.1e-08 62.4 71 52.1
CAN.G166.12 Capsicum annuum HOM05D002112 ORTHO05D005377 6.7e-08 62.0 71 53.5
SEGI_37825 Sequoiadendron giganteum HOM05D002112 ORTHO05D005377 1.9e-07 60.5 40 67.5


User provided reference genes

Program Settings