Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002112', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '316', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p34350' => 'bna', 'A01p34360' => 'bna', 'A05p28600' => 'bna', 'Aa31LG10G3690' => 'aar', 'Aa31LG8G7130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.189' => 'aag', 'Actinidia04201' => 'ach', 'Actinidia05072' => 'ach', 'Actinidia22156' => 'ach', 'Actinidia32273' => 'ach', 'Ah.06g182500' => 'amhyb', 'Ah.14g085620' => 'amhyb', 'AL3G34040' => 'aly', 'AL3G34050' => 'aly', 'Aqoxy1G02961' => 'aox', 'Aqoxy2G01186' => 'aox', 'Aqoxy2G01188' => 'aox', 'Aqoxy7G04120' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4VH6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N9T88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLP8YM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNXW1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM06HE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASA6B' => 'arhy', 'AT3G20320' => 'ath', 'AT3G20330' => 'ath', 'ATR0559G336' => 'atr', 'ATR0772G119' => 'atr', 'Atru.chr1.3234' => 'acertr', 'Atru.chr1.3238' => 'acertr', 'Atru.chr4.1269' => 'acertr', 'AUR62015837' => 'cqu', 'AUR62020382' => 'cqu', 'AUR62031652' => 'cqu', 'AUR62038882' => 'cqu', 'BcaB04g20659' => 'bca', 'BcaB04g20660' => 'bca', 'BcaB06g26098' => 'bca', 'BcaC05g28317' => 'bca', 'BcaC05g28319' => 'bca', 'BcaC09g48987' => 'bca', 'BolC1t04335H' => 'bol', 'BolC5t33119H' => 'bol', 'BolC5t33124H' => 'bol', 'BraA01t03532Z' => 'bra', 'BraA01t03533Z' => 'bra', 'BraA05t21737Z' => 'bra', 'C01p43760' => 'bna', 'C01p43770' => 'bna', 'C05p44010' => 'bna', 'CAN.G1131.18' => 'can', 'CAN.G166.12' => 'can', 'CAN.G321.61' => 'can', 'CAN.G532.29' => 'can', 'CAN.G809.29' => 'can', 'CANSAT01G0306' => 'cansat', 'CANSAT78G1637' => 'cansat', 'CARHR095970' => 'chi', 'CARHR095980' => 'chi', 'Carub.0003s2027' => 'cru', 'Carub.0003s2028' => 'cru', 'Ca_04336_v3' => 'car', 'Ca_06168_v3' => 'car', 'Ca_06185_v3' => 'car', 'Ca_06342_v3' => 'car', 'Ca_18260_v3' => 'car', 'CBR_g24153' => 'cbr', 'CBR_g4282' => 'cbr', 'Cc05_g14160' => 'ccan', 'Cc09_g04780' => 'ccan', 'CDE08G1601' => 'cde', 'CDE12G0428' => 'cde', 'Cfa004646' => 'cfa', 'Cfa020294' => 'cfa', 'Ciclev10020598m.g' => 'ccl', 'Ciclev10025758m.g' => 'ccl', 'CiPaw.01G095700' => 'cil', 'CiPaw.06G167000' => 'cil', 'CiPaw.11G193600' => 'cil', 'ClCG02G003310' => 'cla', 'ClCG04G002470' => 'cla', 'ClCG09G018870' => 'cla', 'ClCG10G005230' => 'cla', 'COL.COLO4_08219' => 'col', 'COL.COLO4_09707' => 'col', 'Cpa.g.c39485' => 'cpa', 'Cpa.g.sc12.257' => 'cpa', 'Cre02.g079700' => 'cre', 'Cre09.g395028' => 'cre', 'Cre16.g694400' => 'cre', 'CsaV3_3G004920' => 'csa', 'CsaV3_7G002030' => 'csa', 'CSS0017930' => 'camsi', 'CSS0048828' => 'camsi', 'DCAR_003742' => 'dca', 'DCAR_007772' => 'dca', 'DCAR_013195' => 'dca', 'Dinv17874' => 'din', 'Dinv21066' => 'din', 'Dinv40788' => 'din', 'Duzib151G0469' => 'dzi', 'Duzib212G0454' => 'dzi', 'Duzib213G0660' => 'dzi', 'ECA236G1011' => 'eca', 'ECA236G4434' => 'eca', 'ECA246G0156' => 'eca', 'ECA246G0582' => 'eca', 'EL10Ac2g03438' => 'bvu', 'EL10Ac4g07746' => 'bvu', 'Eucgr.F03492' => 'egr', 'Eucgr.I00215' => 'egr', 'FAN01G2257' => 'fan', 'FAN03G2363' => 'fan', 'FAN06G0459' => 'fan', 'FAN06G2468' => 'fan', 'FAN07G1453' => 'fan', 'FAN12G4101' => 'fan', 'FAN19G2557' => 'fan', 'FAN22G1550' => 'fan', 'FAN22G2117' => 'fan', 'FAN23G2661' => 'fan', 'FAN26G0200' => 'fan', 'FAN28G2322' => 'fan', 'FvH4_1g23450' => 'fve', 'FvH4_4g09330' => 'fve', 'FvH4_7g16631' => 'fve', 'Glyma.02G275800' => 'gma', 'Glyma.02G293500' => 'gma', 'Glyma.05G131400' => 'gma', 'Glyma.08G086000' => 'gma', 'Glyma.09G110200' => 'gma', 'Glyma.13G074600' => 'gma', 'Glyma.14G021000' => 'gma', 'Glyma.14G040300' => 'gma', 'Glyma.20G048400' => 'gma', 'Gohir.1Z049537' => 'ghi', 'Gohir.A02G114100' => 'ghi', 'Gohir.A08G072300' => 'ghi', 'Gohir.A08G075500' => 'ghi', 'Gohir.A10G139900' => 'ghi', 'Gohir.D05G373500' => 'ghi', 'Gohir.D10G126900' => 'ghi', 'Gorai.009G442200' => 'gra', 'Gorai.011G139800' => 'gra', 'GSVIVG01010853001' => 'vvi', 'GSVIVG01037706001' => 'vvi', 'HanXRQChr02g0033051' => 'han', 'HanXRQChr08g0233571' => 'han', 'HanXRQChr12g0380031' => 'han', 'HanXRQChr15g0470591' => 'han', 'Haze_01451' => 'cav', 'Haze_09725' => 'cav', 'Haze_10243' => 'cav', 'Hma1.2p1_0036F.1_g023230' => 'hma', 'Hma1.2p1_1220F.1_g268110' => 'hma', 'Hma1.2p1_1220F.1_g268115' => 'hma', 'Hma1.2p1_2907F.1_g330140' => 'hma', 'Hma1.2p1_2907F.1_g330145' => 'hma', 'HPP92_018143' => 'vpl', 'HPP92_018526' => 'vpl', 'Hund03181' => 'sun', 'Hund23211' => 'sun', 'Lalb_Chr04g0249531' => 'lal', 'Lalb_Chr12g0209021' => 'lal', 'Lalb_Chr17g0347631' => 'lal', 'Lj1A1151T82' => 'lonja', 'Lj1A1151T83' => 'lonja', 'Lj1A879T54' => 'lonja', 'Lj2A342T117' => 'lonja', 'Lj3A865T85' => 'lonja', 'Lj6g0007258' => 'lja', 'LjContig00272g0002880' => 'lja', 'Lsat_1_v5_gn_0_47481' => 'lsa', 'Lsat_1_v5_gn_0_6420' => 'lsa', 'Lsat_1_v5_gn_3_102740' => 'lsa', 'Lsat_1_v5_gn_3_138320' => 'lsa', 'Lsat_1_v5_gn_5_3200' => 'lsa', 'Lsat_1_v5_gn_7_113801' => 'lsa', 'Manes.04G047300' => 'mes', 'Manes.15G067500' => 'mes', 'Mapoly0038s0049' => 'mpo', 'Mapoly0135s0050' => 'mpo', 'MBI06_g04395_MAGBIO' => 'mbi', 'MBI14_g20102_MAGBIO' => 'mbi', 'MCO06G271' => 'mco', 'MCO07G431' => 'mco', 'MD04G1045800' => 'mdo', 'MD13G1257900' => 'mdo', 'MD13G1258100' => 'mdo', 'MD15G1397500' => 'mdo', 'Medtr3g040090' => 'mtr', 'Medtr4g096900' => 'mtr', 'Medtr5g088340' => 'mtr', 'Medtr5g093570' => 'mtr', 'MELO3C014189.2' => 'cme', 'MELO3C015704.2' => 'cme', 'Migut.H01801' => 'egut', 'Migut.M02025' => 'egut', 'MSTRG.14456' => 'ama', 'MSTRG.24953' => 'ama', 'Nitab4.5_0000632g0010' => 'nta', 'Nitab4.5_0001907g0020' => 'nta', 'Nitab4.5_0002649g0050' => 'nta', 'Nitab4.5_0003902g0080' => 'nta', 'Nn1g03399' => 'nnu', 'Nn1g07265' => 'nnu', 'Nn2g10363' => 'nnu', 'Oeu010462.1' => 'oeu', 'Oeu010464.1' => 'oeu', 'Oeu013123.1' => 'oeu', 'Oeu037772.1' => 'oeu', 'Os01g0974000' => 'osa', 'Os08g0248800' => 'osa', 'Peaxi162Scf00036g02120' => 'pax', 'Peaxi162Scf00036g02121' => 'pax', 'Peaxi162Scf00276g01115' => 'pax', 'Peaxi162Scf00493g00312' => 'pax', 'Peaxi162Scf00580g00069' => 'pax', 'PGR031G2540' => 'pgr', 'PGR083G0908' => 'pgr', 'PGR093G0005' => 'pgr', 'PGSC0003DMG400000980' => 'stu', 'PGSC0003DMG400007324' => 'stu', 'Phvul.006G021000' => 'pvu', 'Phvul.008G205800' => 'pvu', 'Phvul.008G270600' => 'pvu', 'Potri.001G357200' => 'ptr', 'Potri.007G131700' => 'ptr', 'Potri.017G026100' => 'ptr', 'Pp3c11_8230' => 'ppa', 'Pp3c12_4060' => 'ppa', 'Pp3c1_7810' => 'ppa', 'Pp3c3_12480' => 'ppa', 'PRCOL_00002736' => 'pco', 'PRCOL_00003403' => 'pco', 'Prupe.1G198700' => 'ppe', 'Prupe.4G221200' => 'ppe', 'Psat2g012520' => 'psa', 'Psat2g021160' => 'psa', 'Psat5g187680' => 'psa', 'Psat7g089200' => 'psa', 'PSO063G0678' => 'pso', 'PSO151G0006' => 'pso', 'PSO339G3553' => 'pso', 'QL02p069440' => 'qlo', 'QL06p008756' => 'qlo', 'QL08p007027' => 'qlo', 'QL10p051275' => 'qlo', 'QL11p031638' => 'qlo', 'RcHm_v2.0_Chr2g0118821' => 'rch', 'RcHm_v2.0_Chr4g0402721' => 'rch', 'RcHm_v2.0_Chr6g0264841' => 'rch', 'Rhsim06G0222300' => 'rsi', 'Rhsim07G0082300' => 'rsi', 'Rhsim09G0178000' => 'rsi', 'Sabra07G0106900' => 'sbr', 'Sabra07G0118800' => 'sbr', 'Sabra16G0235200' => 'sbr', 'Sabra17G0000800' => 'sbr', 'Sabra17G0015800' => 'sbr', 'SalBow5G0693' => 'sbo', 'Sc06g0004500' => 'sci', 'Sc07g0004100' => 'sci', 'Sc07g0004110' => 'sci', 'Sc19g0002800' => 'sci', 'Sed0017575' => 'sed', 'Sed0025734' => 'sed', 'SEGI_04192' => 'sgi', 'SEGI_07155' => 'sgi', 'SEGI_07334' => 'sgi', 'SEGI_29547' => 'sgi', 'SEGI_37825' => 'sgi', 'SGA_v2.0_scaffold120G32847' => 'sas', 'SGA_v2.0_scaffold16G07839' => 'sas', 'SHI26581' => 'shi', 'SHI29120' => 'shi', 'SMO339G0015' => 'smo', 'SMO356G0377' => 'smo', 'Solyc02g082030.3' => 'sly', 'Solyc11g006350.1' => 'sly', 'Sopen02g026670' => 'spe', 'Sopen11g002250' => 'spe', 'Sp3g18350' => 'spa', 'Sp3g18360' => 'spa', 'Sp6g12890' => 'spa', 'TAR369G0031' => 'tar', 'TAR623G0168' => 'tar', 'TAR623G1172' => 'tar', 'TAR627G0566' => 'tar', 'TAR629G1251' => 'tar', 'THA.LOC104817851' => 'tha', 'THA.LOC104817853' => 'tha', 'Thecc.04G174100' => 'tca', 'Thecc.07G030500' => 'tca', 'Thhalv10020870m.g' => 'esa', 'Thhalv10020922m.g' => 'esa', 'TPR.G11324' => 'tpr', 'TPR.G1169' => 'tpr', 'TPR.G2908' => 'tpr', 'TWI38G0996' => 'twi', 'TWI38G1671' => 'twi', 'TWI39G1031' => 'twi', 'unitig_748.g7486' => 'ugi', 'unitig_8.g4479' => 'ugi', 'vmacro12410' => 'vma', 'vmacro13897' => 'vma', 'vmacro22326' => 'vma', 'VMungo0540G0891' => 'vmu', 'VMungo0647G1381' => 'vmu', 'VMungo0647G1998' => 'vmu', 'VMungo0647G2153' => 'vmu', 'Zm00001eb139760' => 'zma', 'Zm00001eb178070' => 'zma', 'Zm00001eb362140' => 'zma', 'Zm00001eb412930' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002112', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002112' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002112', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '316', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002112' ) ), 'genes' => array( 'A01p34350' => 'bna', 'A01p34360' => 'bna', 'A05p28600' => 'bna', 'Aa31LG10G3690' => 'aar', 'Aa31LG8G7130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.189' => 'aag', 'Actinidia04201' => 'ach', 'Actinidia05072' => 'ach', 'Actinidia22156' => 'ach', 'Actinidia32273' => 'ach', 'Ah.06g182500' => 'amhyb', 'Ah.14g085620' => 'amhyb', 'AL3G34040' => 'aly', 'AL3G34050' => 'aly', 'Aqoxy1G02961' => 'aox', 'Aqoxy2G01186' => 'aox', 'Aqoxy2G01188' => 'aox', 'Aqoxy7G04120' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4VH6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N9T88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLP8YM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNXW1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM06HE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASA6B' => 'arhy', 'AT3G20320' => 'ath', 'AT3G20330' => 'ath', 'ATR0559G336' => 'atr', 'ATR0772G119' => 'atr', 'Atru.chr1.3234' => 'acertr', 'Atru.chr1.3238' => 'acertr', 'Atru.chr4.1269' => 'acertr', 'AUR62015837' => 'cqu', 'AUR62020382' => 'cqu', 'AUR62031652' => 'cqu', 'AUR62038882' => 'cqu', 'BcaB04g20659' => 'bca', 'BcaB04g20660' => 'bca', 'BcaB06g26098' => 'bca', 'BcaC05g28317' => 'bca', 'BcaC05g28319' => 'bca', 'BcaC09g48987' => 'bca', 'BolC1t04335H' => 'bol', 'BolC5t33119H' => 'bol', 'BolC5t33124H' => 'bol', 'BraA01t03532Z' => 'bra', 'BraA01t03533Z' => 'bra', 'BraA05t21737Z' => 'bra', 'C01p43760' => 'bna', 'C01p43770' => 'bna', 'C05p44010' => 'bna', 'CAN.G1131.18' => 'can', 'CAN.G166.12' => 'can', 'CAN.G321.61' => 'can', 'CAN.G532.29' => 'can', 'CAN.G809.29' => 'can', 'CANSAT01G0306' => 'cansat', 'CANSAT78G1637' => 'cansat', 'CARHR095970' => 'chi', 'CARHR095980' => 'chi', 'Carub.0003s2027' => 'cru', 'Carub.0003s2028' => 'cru', 'Ca_04336_v3' => 'car', 'Ca_06168_v3' => 'car', 'Ca_06185_v3' => 'car', 'Ca_06342_v3' => 'car', 'Ca_18260_v3' => 'car', 'CBR_g24153' => 'cbr', 'CBR_g4282' => 'cbr', 'Cc05_g14160' => 'ccan', 'Cc09_g04780' => 'ccan', 'CDE08G1601' => 'cde', 'CDE12G0428' => 'cde', 'Cfa004646' => 'cfa', 'Cfa020294' => 'cfa', 'Ciclev10020598m.g' => 'ccl', 'Ciclev10025758m.g' => 'ccl', 'CiPaw.01G095700' => 'cil', 'CiPaw.06G167000' => 'cil', 'CiPaw.11G193600' => 'cil', 'ClCG02G003310' => 'cla', 'ClCG04G002470' => 'cla', 'ClCG09G018870' => 'cla', 'ClCG10G005230' => 'cla', 'COL.COLO4_08219' => 'col', 'COL.COLO4_09707' => 'col', 'Cpa.g.c39485' => 'cpa', 'Cpa.g.sc12.257' => 'cpa', 'Cre02.g079700' => 'cre', 'Cre09.g395028' => 'cre', 'Cre16.g694400' => 'cre', 'CsaV3_3G004920' => 'csa', 'CsaV3_7G002030' => 'csa', 'CSS0017930' => 'camsi', 'CSS0048828' => 'camsi', 'DCAR_003742' => 'dca', 'DCAR_007772' => 'dca', 'DCAR_013195' => 'dca', 'Dinv17874' => 'din', 'Dinv21066' => 'din', 'Dinv40788' => 'din', 'Duzib151G0469' => 'dzi', 'Duzib212G0454' => 'dzi', 'Duzib213G0660' => 'dzi', 'ECA236G1011' => 'eca', 'ECA236G4434' => 'eca', 'ECA246G0156' => 'eca', 'ECA246G0582' => 'eca', 'EL10Ac2g03438' => 'bvu', 'EL10Ac4g07746' => 'bvu', 'Eucgr.F03492' => 'egr', 'Eucgr.I00215' => 'egr', 'FAN01G2257' => 'fan', 'FAN03G2363' => 'fan', 'FAN06G0459' => 'fan', 'FAN06G2468' => 'fan', 'FAN07G1453' => 'fan', 'FAN12G4101' => 'fan', 'FAN19G2557' => 'fan', 'FAN22G1550' => 'fan', 'FAN22G2117' => 'fan', 'FAN23G2661' => 'fan', 'FAN26G0200' => 'fan', 'FAN28G2322' => 'fan', 'FvH4_1g23450' => 'fve', 'FvH4_4g09330' => 'fve', 'FvH4_7g16631' => 'fve', 'Glyma.02G275800' => 'gma', 'Glyma.02G293500' => 'gma', 'Glyma.05G131400' => 'gma', 'Glyma.08G086000' => 'gma', 'Glyma.09G110200' => 'gma', 'Glyma.13G074600' => 'gma', 'Glyma.14G021000' => 'gma', 'Glyma.14G040300' => 'gma', 'Glyma.20G048400' => 'gma', 'Gohir.1Z049537' => 'ghi', 'Gohir.A02G114100' => 'ghi', 'Gohir.A08G072300' => 'ghi', 'Gohir.A08G075500' => 'ghi', 'Gohir.A10G139900' => 'ghi', 'Gohir.D05G373500' => 'ghi', 'Gohir.D10G126900' => 'ghi', 'Gorai.009G442200' => 'gra', 'Gorai.011G139800' => 'gra', 'GSVIVG01010853001' => 'vvi', 'GSVIVG01037706001' => 'vvi', 'HanXRQChr02g0033051' => 'han', 'HanXRQChr08g0233571' => 'han', 'HanXRQChr12g0380031' => 'han', 'HanXRQChr15g0470591' => 'han', 'Haze_01451' => 'cav', 'Haze_09725' => 'cav', 'Haze_10243' => 'cav', 'Hma1.2p1_0036F.1_g023230' => 'hma', 'Hma1.2p1_1220F.1_g268110' => 'hma', 'Hma1.2p1_1220F.1_g268115' => 'hma', 'Hma1.2p1_2907F.1_g330140' => 'hma', 'Hma1.2p1_2907F.1_g330145' => 'hma', 'HPP92_018143' => 'vpl', 'HPP92_018526' => 'vpl', 'Hund03181' => 'sun', 'Hund23211' => 'sun', 'Lalb_Chr04g0249531' => 'lal', 'Lalb_Chr12g0209021' => 'lal', 'Lalb_Chr17g0347631' => 'lal', 'Lj1A1151T82' => 'lonja', 'Lj1A1151T83' => 'lonja', 'Lj1A879T54' => 'lonja', 'Lj2A342T117' => 'lonja', 'Lj3A865T85' => 'lonja', 'Lj6g0007258' => 'lja', 'LjContig00272g0002880' => 'lja', 'Lsat_1_v5_gn_0_47481' => 'lsa', 'Lsat_1_v5_gn_0_6420' => 'lsa', 'Lsat_1_v5_gn_3_102740' => 'lsa', 'Lsat_1_v5_gn_3_138320' => 'lsa', 'Lsat_1_v5_gn_5_3200' => 'lsa', 'Lsat_1_v5_gn_7_113801' => 'lsa', 'Manes.04G047300' => 'mes', 'Manes.15G067500' => 'mes', 'Mapoly0038s0049' => 'mpo', 'Mapoly0135s0050' => 'mpo', 'MBI06_g04395_MAGBIO' => 'mbi', 'MBI14_g20102_MAGBIO' => 'mbi', 'MCO06G271' => 'mco', 'MCO07G431' => 'mco', 'MD04G1045800' => 'mdo', 'MD13G1257900' => 'mdo', 'MD13G1258100' => 'mdo', 'MD15G1397500' => 'mdo', 'Medtr3g040090' => 'mtr', 'Medtr4g096900' => 'mtr', 'Medtr5g088340' => 'mtr', 'Medtr5g093570' => 'mtr', 'MELO3C014189.2' => 'cme', 'MELO3C015704.2' => 'cme', 'Migut.H01801' => 'egut', 'Migut.M02025' => 'egut', 'MSTRG.14456' => 'ama', 'MSTRG.24953' => 'ama', 'Nitab4.5_0000632g0010' => 'nta', 'Nitab4.5_0001907g0020' => 'nta', 'Nitab4.5_0002649g0050' => 'nta', 'Nitab4.5_0003902g0080' => 'nta', 'Nn1g03399' => 'nnu', 'Nn1g07265' => 'nnu', 'Nn2g10363' => 'nnu', 'Oeu010462.1' => 'oeu', 'Oeu010464.1' => 'oeu', 'Oeu013123.1' => 'oeu', 'Oeu037772.1' => 'oeu', 'Os01g0974000' => 'osa', 'Os08g0248800' => 'osa', 'Peaxi162Scf00036g02120' => 'pax', 'Peaxi162Scf00036g02121' => 'pax', 'Peaxi162Scf00276g01115' => 'pax', 'Peaxi162Scf00493g00312' => 'pax', 'Peaxi162Scf00580g00069' => 'pax', 'PGR031G2540' => 'pgr', 'PGR083G0908' => 'pgr', 'PGR093G0005' => 'pgr', 'PGSC0003DMG400000980' => 'stu', 'PGSC0003DMG400007324' => 'stu', 'Phvul.006G021000' => 'pvu', 'Phvul.008G205800' => 'pvu', 'Phvul.008G270600' => 'pvu', 'Potri.001G357200' => 'ptr', 'Potri.007G131700' => 'ptr', 'Potri.017G026100' => 'ptr', 'Pp3c11_8230' => 'ppa', 'Pp3c12_4060' => 'ppa', 'Pp3c1_7810' => 'ppa', 'Pp3c3_12480' => 'ppa', 'PRCOL_00002736' => 'pco', 'PRCOL_00003403' => 'pco', 'Prupe.1G198700' => 'ppe', 'Prupe.4G221200' => 'ppe', 'Psat2g012520' => 'psa', 'Psat2g021160' => 'psa', 'Psat5g187680' => 'psa', 'Psat7g089200' => 'psa', 'PSO063G0678' => 'pso', 'PSO151G0006' => 'pso', 'PSO339G3553' => 'pso', 'QL02p069440' => 'qlo', 'QL06p008756' => 'qlo', 'QL08p007027' => 'qlo', 'QL10p051275' => 'qlo', 'QL11p031638' => 'qlo', 'RcHm_v2.0_Chr2g0118821' => 'rch', 'RcHm_v2.0_Chr4g0402721' => 'rch', 'RcHm_v2.0_Chr6g0264841' => 'rch', 'Rhsim06G0222300' => 'rsi', 'Rhsim07G0082300' => 'rsi', 'Rhsim09G0178000' => 'rsi', 'Sabra07G0106900' => 'sbr', 'Sabra07G0118800' => 'sbr', 'Sabra16G0235200' => 'sbr', 'Sabra17G0000800' => 'sbr', 'Sabra17G0015800' => 'sbr', 'SalBow5G0693' => 'sbo', 'Sc06g0004500' => 'sci', 'Sc07g0004100' => 'sci', 'Sc07g0004110' => 'sci', 'Sc19g0002800' => 'sci', 'Sed0017575' => 'sed', 'Sed0025734' => 'sed', 'SEGI_04192' => 'sgi', 'SEGI_07155' => 'sgi', 'SEGI_07334' => 'sgi', 'SEGI_29547' => 'sgi', 'SEGI_37825' => 'sgi', 'SGA_v2.0_scaffold120G32847' => 'sas', 'SGA_v2.0_scaffold16G07839' => 'sas', 'SHI26581' => 'shi', 'SHI29120' => 'shi', 'SMO339G0015' => 'smo', 'SMO356G0377' => 'smo', 'Solyc02g082030.3' => 'sly', 'Solyc11g006350.1' => 'sly', 'Sopen02g026670' => 'spe', 'Sopen11g002250' => 'spe', 'Sp3g18350' => 'spa', 'Sp3g18360' => 'spa', 'Sp6g12890' => 'spa', 'TAR369G0031' => 'tar', 'TAR623G0168' => 'tar', 'TAR623G1172' => 'tar', 'TAR627G0566' => 'tar', 'TAR629G1251' => 'tar', 'THA.LOC104817851' => 'tha', 'THA.LOC104817853' => 'tha', 'Thecc.04G174100' => 'tca', 'Thecc.07G030500' => 'tca', 'Thhalv10020870m.g' => 'esa', 'Thhalv10020922m.g' => 'esa', 'TPR.G11324' => 'tpr', 'TPR.G1169' => 'tpr', 'TPR.G2908' => 'tpr', 'TWI38G0996' => 'twi', 'TWI38G1671' => 'twi', 'TWI39G1031' => 'twi', 'unitig_748.g7486' => 'ugi', 'unitig_8.g4479' => 'ugi', 'vmacro12410' => 'vma', 'vmacro13897' => 'vma', 'vmacro22326' => 'vma', 'VMungo0540G0891' => 'vmu', 'VMungo0647G1381' => 'vmu', 'VMungo0647G1998' => 'vmu', 'VMungo0647G2153' => 'vmu', 'Zm00001eb139760' => 'zma', 'Zm00001eb178070' => 'zma', 'Zm00001eb362140' => 'zma', 'Zm00001eb412930' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002112' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002112' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002112' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002112' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002112', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '316', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p34350' => 'bna', 'A01p34360' => 'bna', 'A05p28600' => 'bna', 'Aa31LG10G3690' => 'aar', 'Aa31LG8G7130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.189' => 'aag', 'Actinidia04201' => 'ach', 'Actinidia05072' => 'ach', 'Actinidia22156' => 'ach', 'Actinidia32273' => 'ach', 'Ah.06g182500' => 'amhyb', 'Ah.14g085620' => 'amhyb', 'AL3G34040' => 'aly', 'AL3G34050' => 'aly', 'Aqoxy1G02961' => 'aox', 'Aqoxy2G01186' => 'aox', 'Aqoxy2G01188' => 'aox', 'Aqoxy7G04120' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4VH6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N9T88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLP8YM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNXW1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM06HE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASA6B' => 'arhy', 'AT3G20320' => 'ath', 'AT3G20330' => 'ath', 'ATR0559G336' => 'atr', 'ATR0772G119' => 'atr', 'Atru.chr1.3234' => 'acertr', 'Atru.chr1.3238' => 'acertr', 'Atru.chr4.1269' => 'acertr', 'AUR62015837' => 'cqu', 'AUR62020382' => 'cqu', 'AUR62031652' => 'cqu', 'AUR62038882' => 'cqu', 'BcaB04g20659' => 'bca', 'BcaB04g20660' => 'bca', 'BcaB06g26098' => 'bca', 'BcaC05g28317' => 'bca', 'BcaC05g28319' => 'bca', 'BcaC09g48987' => 'bca', 'BolC1t04335H' => 'bol', 'BolC5t33119H' => 'bol', 'BolC5t33124H' => 'bol', 'BraA01t03532Z' => 'bra', 'BraA01t03533Z' => 'bra', 'BraA05t21737Z' => 'bra', 'C01p43760' => 'bna', 'C01p43770' => 'bna', 'C05p44010' => 'bna', 'CAN.G1131.18' => 'can', 'CAN.G166.12' => 'can', 'CAN.G321.61' => 'can', 'CAN.G532.29' => 'can', 'CAN.G809.29' => 'can', 'CANSAT01G0306' => 'cansat', 'CANSAT78G1637' => 'cansat', 'CARHR095970' => 'chi', 'CARHR095980' => 'chi', 'Carub.0003s2027' => 'cru', 'Carub.0003s2028' => 'cru', 'Ca_04336_v3' => 'car', 'Ca_06168_v3' => 'car', 'Ca_06185_v3' => 'car', 'Ca_06342_v3' => 'car', 'Ca_18260_v3' => 'car', 'CBR_g24153' => 'cbr', 'CBR_g4282' => 'cbr', 'Cc05_g14160' => 'ccan', 'Cc09_g04780' => 'ccan', 'CDE08G1601' => 'cde', 'CDE12G0428' => 'cde', 'Cfa004646' => 'cfa', 'Cfa020294' => 'cfa', 'Ciclev10020598m.g' => 'ccl', 'Ciclev10025758m.g' => 'ccl', 'CiPaw.01G095700' => 'cil', 'CiPaw.06G167000' => 'cil', 'CiPaw.11G193600' => 'cil', 'ClCG02G003310' => 'cla', 'ClCG04G002470' => 'cla', 'ClCG09G018870' => 'cla', 'ClCG10G005230' => 'cla', 'COL.COLO4_08219' => 'col', 'COL.COLO4_09707' => 'col', 'Cpa.g.c39485' => 'cpa', 'Cpa.g.sc12.257' => 'cpa', 'Cre02.g079700' => 'cre', 'Cre09.g395028' => 'cre', 'Cre16.g694400' => 'cre', 'CsaV3_3G004920' => 'csa', 'CsaV3_7G002030' => 'csa', 'CSS0017930' => 'camsi', 'CSS0048828' => 'camsi', 'DCAR_003742' => 'dca', 'DCAR_007772' => 'dca', 'DCAR_013195' => 'dca', 'Dinv17874' => 'din', 'Dinv21066' => 'din', 'Dinv40788' => 'din', 'Duzib151G0469' => 'dzi', 'Duzib212G0454' => 'dzi', 'Duzib213G0660' => 'dzi', 'ECA236G1011' => 'eca', 'ECA236G4434' => 'eca', 'ECA246G0156' => 'eca', 'ECA246G0582' => 'eca', 'EL10Ac2g03438' => 'bvu', 'EL10Ac4g07746' => 'bvu', 'Eucgr.F03492' => 'egr', 'Eucgr.I00215' => 'egr', 'FAN01G2257' => 'fan', 'FAN03G2363' => 'fan', 'FAN06G0459' => 'fan', 'FAN06G2468' => 'fan', 'FAN07G1453' => 'fan', 'FAN12G4101' => 'fan', 'FAN19G2557' => 'fan', 'FAN22G1550' => 'fan', 'FAN22G2117' => 'fan', 'FAN23G2661' => 'fan', 'FAN26G0200' => 'fan', 'FAN28G2322' => 'fan', 'FvH4_1g23450' => 'fve', 'FvH4_4g09330' => 'fve', 'FvH4_7g16631' => 'fve', 'Glyma.02G275800' => 'gma', 'Glyma.02G293500' => 'gma', 'Glyma.05G131400' => 'gma', 'Glyma.08G086000' => 'gma', 'Glyma.09G110200' => 'gma', 'Glyma.13G074600' => 'gma', 'Glyma.14G021000' => 'gma', 'Glyma.14G040300' => 'gma', 'Glyma.20G048400' => 'gma', 'Gohir.1Z049537' => 'ghi', 'Gohir.A02G114100' => 'ghi', 'Gohir.A08G072300' => 'ghi', 'Gohir.A08G075500' => 'ghi', 'Gohir.A10G139900' => 'ghi', 'Gohir.D05G373500' => 'ghi', 'Gohir.D10G126900' => 'ghi', 'Gorai.009G442200' => 'gra', 'Gorai.011G139800' => 'gra', 'GSVIVG01010853001' => 'vvi', 'GSVIVG01037706001' => 'vvi', 'HanXRQChr02g0033051' => 'han', 'HanXRQChr08g0233571' => 'han', 'HanXRQChr12g0380031' => 'han', 'HanXRQChr15g0470591' => 'han', 'Haze_01451' => 'cav', 'Haze_09725' => 'cav', 'Haze_10243' => 'cav', 'Hma1.2p1_0036F.1_g023230' => 'hma', 'Hma1.2p1_1220F.1_g268110' => 'hma', 'Hma1.2p1_1220F.1_g268115' => 'hma', 'Hma1.2p1_2907F.1_g330140' => 'hma', 'Hma1.2p1_2907F.1_g330145' => 'hma', 'HPP92_018143' => 'vpl', 'HPP92_018526' => 'vpl', 'Hund03181' => 'sun', 'Hund23211' => 'sun', 'Lalb_Chr04g0249531' => 'lal', 'Lalb_Chr12g0209021' => 'lal', 'Lalb_Chr17g0347631' => 'lal', 'Lj1A1151T82' => 'lonja', 'Lj1A1151T83' => 'lonja', 'Lj1A879T54' => 'lonja', 'Lj2A342T117' => 'lonja', 'Lj3A865T85' => 'lonja', 'Lj6g0007258' => 'lja', 'LjContig00272g0002880' => 'lja', 'Lsat_1_v5_gn_0_47481' => 'lsa', 'Lsat_1_v5_gn_0_6420' => 'lsa', 'Lsat_1_v5_gn_3_102740' => 'lsa', 'Lsat_1_v5_gn_3_138320' => 'lsa', 'Lsat_1_v5_gn_5_3200' => 'lsa', 'Lsat_1_v5_gn_7_113801' => 'lsa', 'Manes.04G047300' => 'mes', 'Manes.15G067500' => 'mes', 'Mapoly0038s0049' => 'mpo', 'Mapoly0135s0050' => 'mpo', 'MBI06_g04395_MAGBIO' => 'mbi', 'MBI14_g20102_MAGBIO' => 'mbi', 'MCO06G271' => 'mco', 'MCO07G431' => 'mco', 'MD04G1045800' => 'mdo', 'MD13G1257900' => 'mdo', 'MD13G1258100' => 'mdo', 'MD15G1397500' => 'mdo', 'Medtr3g040090' => 'mtr', 'Medtr4g096900' => 'mtr', 'Medtr5g088340' => 'mtr', 'Medtr5g093570' => 'mtr', 'MELO3C014189.2' => 'cme', 'MELO3C015704.2' => 'cme', 'Migut.H01801' => 'egut', 'Migut.M02025' => 'egut', 'MSTRG.14456' => 'ama', 'MSTRG.24953' => 'ama', 'Nitab4.5_0000632g0010' => 'nta', 'Nitab4.5_0001907g0020' => 'nta', 'Nitab4.5_0002649g0050' => 'nta', 'Nitab4.5_0003902g0080' => 'nta', 'Nn1g03399' => 'nnu', 'Nn1g07265' => 'nnu', 'Nn2g10363' => 'nnu', 'Oeu010462.1' => 'oeu', 'Oeu010464.1' => 'oeu', 'Oeu013123.1' => 'oeu', 'Oeu037772.1' => 'oeu', 'Os01g0974000' => 'osa', 'Os08g0248800' => 'osa', 'Peaxi162Scf00036g02120' => 'pax', 'Peaxi162Scf00036g02121' => 'pax', 'Peaxi162Scf00276g01115' => 'pax', 'Peaxi162Scf00493g00312' => 'pax', 'Peaxi162Scf00580g00069' => 'pax', 'PGR031G2540' => 'pgr', 'PGR083G0908' => 'pgr', 'PGR093G0005' => 'pgr', 'PGSC0003DMG400000980' => 'stu', 'PGSC0003DMG400007324' => 'stu', 'Phvul.006G021000' => 'pvu', 'Phvul.008G205800' => 'pvu', 'Phvul.008G270600' => 'pvu', 'Potri.001G357200' => 'ptr', 'Potri.007G131700' => 'ptr', 'Potri.017G026100' => 'ptr', 'Pp3c11_8230' => 'ppa', 'Pp3c12_4060' => 'ppa', 'Pp3c1_7810' => 'ppa', 'Pp3c3_12480' => 'ppa', 'PRCOL_00002736' => 'pco', 'PRCOL_00003403' => 'pco', 'Prupe.1G198700' => 'ppe', 'Prupe.4G221200' => 'ppe', 'Psat2g012520' => 'psa', 'Psat2g021160' => 'psa', 'Psat5g187680' => 'psa', 'Psat7g089200' => 'psa', 'PSO063G0678' => 'pso', 'PSO151G0006' => 'pso', 'PSO339G3553' => 'pso', 'QL02p069440' => 'qlo', 'QL06p008756' => 'qlo', 'QL08p007027' => 'qlo', 'QL10p051275' => 'qlo', 'QL11p031638' => 'qlo', 'RcHm_v2.0_Chr2g0118821' => 'rch', 'RcHm_v2.0_Chr4g0402721' => 'rch', 'RcHm_v2.0_Chr6g0264841' => 'rch', 'Rhsim06G0222300' => 'rsi', 'Rhsim07G0082300' => 'rsi', 'Rhsim09G0178000' => 'rsi', 'Sabra07G0106900' => 'sbr', 'Sabra07G0118800' => 'sbr', 'Sabra16G0235200' => 'sbr', 'Sabra17G0000800' => 'sbr', 'Sabra17G0015800' => 'sbr', 'SalBow5G0693' => 'sbo', 'Sc06g0004500' => 'sci', 'Sc07g0004100' => 'sci', 'Sc07g0004110' => 'sci', 'Sc19g0002800' => 'sci', 'Sed0017575' => 'sed', 'Sed0025734' => 'sed', 'SEGI_04192' => 'sgi', 'SEGI_07155' => 'sgi', 'SEGI_07334' => 'sgi', 'SEGI_29547' => 'sgi', 'SEGI_37825' => 'sgi', 'SGA_v2.0_scaffold120G32847' => 'sas', 'SGA_v2.0_scaffold16G07839' => 'sas', 'SHI26581' => 'shi', 'SHI29120' => 'shi', 'SMO339G0015' => 'smo', 'SMO356G0377' => 'smo', 'Solyc02g082030.3' => 'sly', 'Solyc11g006350.1' => 'sly', 'Sopen02g026670' => 'spe', 'Sopen11g002250' => 'spe', 'Sp3g18350' => 'spa', 'Sp3g18360' => 'spa', 'Sp6g12890' => 'spa', 'TAR369G0031' => 'tar', 'TAR623G0168' => 'tar', 'TAR623G1172' => 'tar', 'TAR627G0566' => 'tar', 'TAR629G1251' => 'tar', 'THA.LOC104817851' => 'tha', 'THA.LOC104817853' => 'tha', 'Thecc.04G174100' => 'tca', 'Thecc.07G030500' => 'tca', 'Thhalv10020870m.g' => 'esa', 'Thhalv10020922m.g' => 'esa', 'TPR.G11324' => 'tpr', 'TPR.G1169' => 'tpr', 'TPR.G2908' => 'tpr', 'TWI38G0996' => 'twi', 'TWI38G1671' => 'twi', 'TWI39G1031' => 'twi', 'unitig_748.g7486' => 'ugi', 'unitig_8.g4479' => 'ugi', 'vmacro12410' => 'vma', 'vmacro13897' => 'vma', 'vmacro22326' => 'vma', 'VMungo0540G0891' => 'vmu', 'VMungo0647G1381' => 'vmu', 'VMungo0647G1998' => 'vmu', 'VMungo0647G2153' => 'vmu', 'Zm00001eb139760' => 'zma', 'Zm00001eb178070' => 'zma', 'Zm00001eb362140' => 'zma', 'Zm00001eb412930' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002112', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002112' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002112', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '316', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002112' ) ), 'genes' => array( 'A01p34350' => 'bna', 'A01p34360' => 'bna', 'A05p28600' => 'bna', 'Aa31LG10G3690' => 'aar', 'Aa31LG8G7130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.189' => 'aag', 'Actinidia04201' => 'ach', 'Actinidia05072' => 'ach', 'Actinidia22156' => 'ach', 'Actinidia32273' => 'ach', 'Ah.06g182500' => 'amhyb', 'Ah.14g085620' => 'amhyb', 'AL3G34040' => 'aly', 'AL3G34050' => 'aly', 'Aqoxy1G02961' => 'aox', 'Aqoxy2G01186' => 'aox', 'Aqoxy2G01188' => 'aox', 'Aqoxy7G04120' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4VH6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N9T88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLP8YM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNXW1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM06HE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASA6B' => 'arhy', 'AT3G20320' => 'ath', 'AT3G20330' => 'ath', 'ATR0559G336' => 'atr', 'ATR0772G119' => 'atr', 'Atru.chr1.3234' => 'acertr', 'Atru.chr1.3238' => 'acertr', 'Atru.chr4.1269' => 'acertr', 'AUR62015837' => 'cqu', 'AUR62020382' => 'cqu', 'AUR62031652' => 'cqu', 'AUR62038882' => 'cqu', 'BcaB04g20659' => 'bca', 'BcaB04g20660' => 'bca', 'BcaB06g26098' => 'bca', 'BcaC05g28317' => 'bca', 'BcaC05g28319' => 'bca', 'BcaC09g48987' => 'bca', 'BolC1t04335H' => 'bol', 'BolC5t33119H' => 'bol', 'BolC5t33124H' => 'bol', 'BraA01t03532Z' => 'bra', 'BraA01t03533Z' => 'bra', 'BraA05t21737Z' => 'bra', 'C01p43760' => 'bna', 'C01p43770' => 'bna', 'C05p44010' => 'bna', 'CAN.G1131.18' => 'can', 'CAN.G166.12' => 'can', 'CAN.G321.61' => 'can', 'CAN.G532.29' => 'can', 'CAN.G809.29' => 'can', 'CANSAT01G0306' => 'cansat', 'CANSAT78G1637' => 'cansat', 'CARHR095970' => 'chi', 'CARHR095980' => 'chi', 'Carub.0003s2027' => 'cru', 'Carub.0003s2028' => 'cru', 'Ca_04336_v3' => 'car', 'Ca_06168_v3' => 'car', 'Ca_06185_v3' => 'car', 'Ca_06342_v3' => 'car', 'Ca_18260_v3' => 'car', 'CBR_g24153' => 'cbr', 'CBR_g4282' => 'cbr', 'Cc05_g14160' => 'ccan', 'Cc09_g04780' => 'ccan', 'CDE08G1601' => 'cde', 'CDE12G0428' => 'cde', 'Cfa004646' => 'cfa', 'Cfa020294' => 'cfa', 'Ciclev10020598m.g' => 'ccl', 'Ciclev10025758m.g' => 'ccl', 'CiPaw.01G095700' => 'cil', 'CiPaw.06G167000' => 'cil', 'CiPaw.11G193600' => 'cil', 'ClCG02G003310' => 'cla', 'ClCG04G002470' => 'cla', 'ClCG09G018870' => 'cla', 'ClCG10G005230' => 'cla', 'COL.COLO4_08219' => 'col', 'COL.COLO4_09707' => 'col', 'Cpa.g.c39485' => 'cpa', 'Cpa.g.sc12.257' => 'cpa', 'Cre02.g079700' => 'cre', 'Cre09.g395028' => 'cre', 'Cre16.g694400' => 'cre', 'CsaV3_3G004920' => 'csa', 'CsaV3_7G002030' => 'csa', 'CSS0017930' => 'camsi', 'CSS0048828' => 'camsi', 'DCAR_003742' => 'dca', 'DCAR_007772' => 'dca', 'DCAR_013195' => 'dca', 'Dinv17874' => 'din', 'Dinv21066' => 'din', 'Dinv40788' => 'din', 'Duzib151G0469' => 'dzi', 'Duzib212G0454' => 'dzi', 'Duzib213G0660' => 'dzi', 'ECA236G1011' => 'eca', 'ECA236G4434' => 'eca', 'ECA246G0156' => 'eca', 'ECA246G0582' => 'eca', 'EL10Ac2g03438' => 'bvu', 'EL10Ac4g07746' => 'bvu', 'Eucgr.F03492' => 'egr', 'Eucgr.I00215' => 'egr', 'FAN01G2257' => 'fan', 'FAN03G2363' => 'fan', 'FAN06G0459' => 'fan', 'FAN06G2468' => 'fan', 'FAN07G1453' => 'fan', 'FAN12G4101' => 'fan', 'FAN19G2557' => 'fan', 'FAN22G1550' => 'fan', 'FAN22G2117' => 'fan', 'FAN23G2661' => 'fan', 'FAN26G0200' => 'fan', 'FAN28G2322' => 'fan', 'FvH4_1g23450' => 'fve', 'FvH4_4g09330' => 'fve', 'FvH4_7g16631' => 'fve', 'Glyma.02G275800' => 'gma', 'Glyma.02G293500' => 'gma', 'Glyma.05G131400' => 'gma', 'Glyma.08G086000' => 'gma', 'Glyma.09G110200' => 'gma', 'Glyma.13G074600' => 'gma', 'Glyma.14G021000' => 'gma', 'Glyma.14G040300' => 'gma', 'Glyma.20G048400' => 'gma', 'Gohir.1Z049537' => 'ghi', 'Gohir.A02G114100' => 'ghi', 'Gohir.A08G072300' => 'ghi', 'Gohir.A08G075500' => 'ghi', 'Gohir.A10G139900' => 'ghi', 'Gohir.D05G373500' => 'ghi', 'Gohir.D10G126900' => 'ghi', 'Gorai.009G442200' => 'gra', 'Gorai.011G139800' => 'gra', 'GSVIVG01010853001' => 'vvi', 'GSVIVG01037706001' => 'vvi', 'HanXRQChr02g0033051' => 'han', 'HanXRQChr08g0233571' => 'han', 'HanXRQChr12g0380031' => 'han', 'HanXRQChr15g0470591' => 'han', 'Haze_01451' => 'cav', 'Haze_09725' => 'cav', 'Haze_10243' => 'cav', 'Hma1.2p1_0036F.1_g023230' => 'hma', 'Hma1.2p1_1220F.1_g268110' => 'hma', 'Hma1.2p1_1220F.1_g268115' => 'hma', 'Hma1.2p1_2907F.1_g330140' => 'hma', 'Hma1.2p1_2907F.1_g330145' => 'hma', 'HPP92_018143' => 'vpl', 'HPP92_018526' => 'vpl', 'Hund03181' => 'sun', 'Hund23211' => 'sun', 'Lalb_Chr04g0249531' => 'lal', 'Lalb_Chr12g0209021' => 'lal', 'Lalb_Chr17g0347631' => 'lal', 'Lj1A1151T82' => 'lonja', 'Lj1A1151T83' => 'lonja', 'Lj1A879T54' => 'lonja', 'Lj2A342T117' => 'lonja', 'Lj3A865T85' => 'lonja', 'Lj6g0007258' => 'lja', 'LjContig00272g0002880' => 'lja', 'Lsat_1_v5_gn_0_47481' => 'lsa', 'Lsat_1_v5_gn_0_6420' => 'lsa', 'Lsat_1_v5_gn_3_102740' => 'lsa', 'Lsat_1_v5_gn_3_138320' => 'lsa', 'Lsat_1_v5_gn_5_3200' => 'lsa', 'Lsat_1_v5_gn_7_113801' => 'lsa', 'Manes.04G047300' => 'mes', 'Manes.15G067500' => 'mes', 'Mapoly0038s0049' => 'mpo', 'Mapoly0135s0050' => 'mpo', 'MBI06_g04395_MAGBIO' => 'mbi', 'MBI14_g20102_MAGBIO' => 'mbi', 'MCO06G271' => 'mco', 'MCO07G431' => 'mco', 'MD04G1045800' => 'mdo', 'MD13G1257900' => 'mdo', 'MD13G1258100' => 'mdo', 'MD15G1397500' => 'mdo', 'Medtr3g040090' => 'mtr', 'Medtr4g096900' => 'mtr', 'Medtr5g088340' => 'mtr', 'Medtr5g093570' => 'mtr', 'MELO3C014189.2' => 'cme', 'MELO3C015704.2' => 'cme', 'Migut.H01801' => 'egut', 'Migut.M02025' => 'egut', 'MSTRG.14456' => 'ama', 'MSTRG.24953' => 'ama', 'Nitab4.5_0000632g0010' => 'nta', 'Nitab4.5_0001907g0020' => 'nta', 'Nitab4.5_0002649g0050' => 'nta', 'Nitab4.5_0003902g0080' => 'nta', 'Nn1g03399' => 'nnu', 'Nn1g07265' => 'nnu', 'Nn2g10363' => 'nnu', 'Oeu010462.1' => 'oeu', 'Oeu010464.1' => 'oeu', 'Oeu013123.1' => 'oeu', 'Oeu037772.1' => 'oeu', 'Os01g0974000' => 'osa', 'Os08g0248800' => 'osa', 'Peaxi162Scf00036g02120' => 'pax', 'Peaxi162Scf00036g02121' => 'pax', 'Peaxi162Scf00276g01115' => 'pax', 'Peaxi162Scf00493g00312' => 'pax', 'Peaxi162Scf00580g00069' => 'pax', 'PGR031G2540' => 'pgr', 'PGR083G0908' => 'pgr', 'PGR093G0005' => 'pgr', 'PGSC0003DMG400000980' => 'stu', 'PGSC0003DMG400007324' => 'stu', 'Phvul.006G021000' => 'pvu', 'Phvul.008G205800' => 'pvu', 'Phvul.008G270600' => 'pvu', 'Potri.001G357200' => 'ptr', 'Potri.007G131700' => 'ptr', 'Potri.017G026100' => 'ptr', 'Pp3c11_8230' => 'ppa', 'Pp3c12_4060' => 'ppa', 'Pp3c1_7810' => 'ppa', 'Pp3c3_12480' => 'ppa', 'PRCOL_00002736' => 'pco', 'PRCOL_00003403' => 'pco', 'Prupe.1G198700' => 'ppe', 'Prupe.4G221200' => 'ppe', 'Psat2g012520' => 'psa', 'Psat2g021160' => 'psa', 'Psat5g187680' => 'psa', 'Psat7g089200' => 'psa', 'PSO063G0678' => 'pso', 'PSO151G0006' => 'pso', 'PSO339G3553' => 'pso', 'QL02p069440' => 'qlo', 'QL06p008756' => 'qlo', 'QL08p007027' => 'qlo', 'QL10p051275' => 'qlo', 'QL11p031638' => 'qlo', 'RcHm_v2.0_Chr2g0118821' => 'rch', 'RcHm_v2.0_Chr4g0402721' => 'rch', 'RcHm_v2.0_Chr6g0264841' => 'rch', 'Rhsim06G0222300' => 'rsi', 'Rhsim07G0082300' => 'rsi', 'Rhsim09G0178000' => 'rsi', 'Sabra07G0106900' => 'sbr', 'Sabra07G0118800' => 'sbr', 'Sabra16G0235200' => 'sbr', 'Sabra17G0000800' => 'sbr', 'Sabra17G0015800' => 'sbr', 'SalBow5G0693' => 'sbo', 'Sc06g0004500' => 'sci', 'Sc07g0004100' => 'sci', 'Sc07g0004110' => 'sci', 'Sc19g0002800' => 'sci', 'Sed0017575' => 'sed', 'Sed0025734' => 'sed', 'SEGI_04192' => 'sgi', 'SEGI_07155' => 'sgi', 'SEGI_07334' => 'sgi', 'SEGI_29547' => 'sgi', 'SEGI_37825' => 'sgi', 'SGA_v2.0_scaffold120G32847' => 'sas', 'SGA_v2.0_scaffold16G07839' => 'sas', 'SHI26581' => 'shi', 'SHI29120' => 'shi', 'SMO339G0015' => 'smo', 'SMO356G0377' => 'smo', 'Solyc02g082030.3' => 'sly', 'Solyc11g006350.1' => 'sly', 'Sopen02g026670' => 'spe', 'Sopen11g002250' => 'spe', 'Sp3g18350' => 'spa', 'Sp3g18360' => 'spa', 'Sp6g12890' => 'spa', 'TAR369G0031' => 'tar', 'TAR623G0168' => 'tar', 'TAR623G1172' => 'tar', 'TAR627G0566' => 'tar', 'TAR629G1251' => 'tar', 'THA.LOC104817851' => 'tha', 'THA.LOC104817853' => 'tha', 'Thecc.04G174100' => 'tca', 'Thecc.07G030500' => 'tca', 'Thhalv10020870m.g' => 'esa', 'Thhalv10020922m.g' => 'esa', 'TPR.G11324' => 'tpr', 'TPR.G1169' => 'tpr', 'TPR.G2908' => 'tpr', 'TWI38G0996' => 'twi', 'TWI38G1671' => 'twi', 'TWI39G1031' => 'twi', 'unitig_748.g7486' => 'ugi', 'unitig_8.g4479' => 'ugi', 'vmacro12410' => 'vma', 'vmacro13897' => 'vma', 'vmacro22326' => 'vma', 'VMungo0540G0891' => 'vmu', 'VMungo0647G1381' => 'vmu', 'VMungo0647G1998' => 'vmu', 'VMungo0647G2153' => 'vmu', 'Zm00001eb139760' => 'zma', 'Zm00001eb178070' => 'zma', 'Zm00001eb362140' => 'zma', 'Zm00001eb412930' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002112' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002112' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002112' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002112' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002112', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '316', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p34350' => 'bna', 'A01p34360' => 'bna', 'A05p28600' => 'bna', 'Aa31LG10G3690' => 'aar', 'Aa31LG8G7130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.189' => 'aag', 'Actinidia04201' => 'ach', 'Actinidia05072' => 'ach', 'Actinidia22156' => 'ach', 'Actinidia32273' => 'ach', 'Ah.06g182500' => 'amhyb', 'Ah.14g085620' => 'amhyb', 'AL3G34040' => 'aly', 'AL3G34050' => 'aly', 'Aqoxy1G02961' => 'aox', 'Aqoxy2G01186' => 'aox', 'Aqoxy2G01188' => 'aox', 'Aqoxy7G04120' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4VH6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N9T88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLP8YM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNXW1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM06HE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASA6B' => 'arhy', 'AT3G20320' => 'ath', 'AT3G20330' => 'ath', 'ATR0559G336' => 'atr', 'ATR0772G119' => 'atr', 'Atru.chr1.3234' => 'acertr', 'Atru.chr1.3238' => 'acertr', 'Atru.chr4.1269' => 'acertr', 'AUR62015837' => 'cqu', 'AUR62020382' => 'cqu', 'AUR62031652' => 'cqu', 'AUR62038882' => 'cqu', 'BcaB04g20659' => 'bca', 'BcaB04g20660' => 'bca', 'BcaB06g26098' => 'bca', 'BcaC05g28317' => 'bca', 'BcaC05g28319' => 'bca', 'BcaC09g48987' => 'bca', 'BolC1t04335H' => 'bol', 'BolC5t33119H' => 'bol', 'BolC5t33124H' => 'bol', 'BraA01t03532Z' => 'bra', 'BraA01t03533Z' => 'bra', 'BraA05t21737Z' => 'bra', 'C01p43760' => 'bna', 'C01p43770' => 'bna', 'C05p44010' => 'bna', 'CAN.G1131.18' => 'can', 'CAN.G166.12' => 'can', 'CAN.G321.61' => 'can', 'CAN.G532.29' => 'can', 'CAN.G809.29' => 'can', 'CANSAT01G0306' => 'cansat', 'CANSAT78G1637' => 'cansat', 'CARHR095970' => 'chi', 'CARHR095980' => 'chi', 'Carub.0003s2027' => 'cru', 'Carub.0003s2028' => 'cru', 'Ca_04336_v3' => 'car', 'Ca_06168_v3' => 'car', 'Ca_06185_v3' => 'car', 'Ca_06342_v3' => 'car', 'Ca_18260_v3' => 'car', 'CBR_g24153' => 'cbr', 'CBR_g4282' => 'cbr', 'Cc05_g14160' => 'ccan', 'Cc09_g04780' => 'ccan', 'CDE08G1601' => 'cde', 'CDE12G0428' => 'cde', 'Cfa004646' => 'cfa', 'Cfa020294' => 'cfa', 'Ciclev10020598m.g' => 'ccl', 'Ciclev10025758m.g' => 'ccl', 'CiPaw.01G095700' => 'cil', 'CiPaw.06G167000' => 'cil', 'CiPaw.11G193600' => 'cil', 'ClCG02G003310' => 'cla', 'ClCG04G002470' => 'cla', 'ClCG09G018870' => 'cla', 'ClCG10G005230' => 'cla', 'COL.COLO4_08219' => 'col', 'COL.COLO4_09707' => 'col', 'Cpa.g.c39485' => 'cpa', 'Cpa.g.sc12.257' => 'cpa', 'Cre02.g079700' => 'cre', 'Cre09.g395028' => 'cre', 'Cre16.g694400' => 'cre', 'CsaV3_3G004920' => 'csa', 'CsaV3_7G002030' => 'csa', 'CSS0017930' => 'camsi', 'CSS0048828' => 'camsi', 'DCAR_003742' => 'dca', 'DCAR_007772' => 'dca', 'DCAR_013195' => 'dca', 'Dinv17874' => 'din', 'Dinv21066' => 'din', 'Dinv40788' => 'din', 'Duzib151G0469' => 'dzi', 'Duzib212G0454' => 'dzi', 'Duzib213G0660' => 'dzi', 'ECA236G1011' => 'eca', 'ECA236G4434' => 'eca', 'ECA246G0156' => 'eca', 'ECA246G0582' => 'eca', 'EL10Ac2g03438' => 'bvu', 'EL10Ac4g07746' => 'bvu', 'Eucgr.F03492' => 'egr', 'Eucgr.I00215' => 'egr', 'FAN01G2257' => 'fan', 'FAN03G2363' => 'fan', 'FAN06G0459' => 'fan', 'FAN06G2468' => 'fan', 'FAN07G1453' => 'fan', 'FAN12G4101' => 'fan', 'FAN19G2557' => 'fan', 'FAN22G1550' => 'fan', 'FAN22G2117' => 'fan', 'FAN23G2661' => 'fan', 'FAN26G0200' => 'fan', 'FAN28G2322' => 'fan', 'FvH4_1g23450' => 'fve', 'FvH4_4g09330' => 'fve', 'FvH4_7g16631' => 'fve', 'Glyma.02G275800' => 'gma', 'Glyma.02G293500' => 'gma', 'Glyma.05G131400' => 'gma', 'Glyma.08G086000' => 'gma', 'Glyma.09G110200' => 'gma', 'Glyma.13G074600' => 'gma', 'Glyma.14G021000' => 'gma', 'Glyma.14G040300' => 'gma', 'Glyma.20G048400' => 'gma', 'Gohir.1Z049537' => 'ghi', 'Gohir.A02G114100' => 'ghi', 'Gohir.A08G072300' => 'ghi', 'Gohir.A08G075500' => 'ghi', 'Gohir.A10G139900' => 'ghi', 'Gohir.D05G373500' => 'ghi', 'Gohir.D10G126900' => 'ghi', 'Gorai.009G442200' => 'gra', 'Gorai.011G139800' => 'gra', 'GSVIVG01010853001' => 'vvi', 'GSVIVG01037706001' => 'vvi', 'HanXRQChr02g0033051' => 'han', 'HanXRQChr08g0233571' => 'han', 'HanXRQChr12g0380031' => 'han', 'HanXRQChr15g0470591' => 'han', 'Haze_01451' => 'cav', 'Haze_09725' => 'cav', 'Haze_10243' => 'cav', 'Hma1.2p1_0036F.1_g023230' => 'hma', 'Hma1.2p1_1220F.1_g268110' => 'hma', 'Hma1.2p1_1220F.1_g268115' => 'hma', 'Hma1.2p1_2907F.1_g330140' => 'hma', 'Hma1.2p1_2907F.1_g330145' => 'hma', 'HPP92_018143' => 'vpl', 'HPP92_018526' => 'vpl', 'Hund03181' => 'sun', 'Hund23211' => 'sun', 'Lalb_Chr04g0249531' => 'lal', 'Lalb_Chr12g0209021' => 'lal', 'Lalb_Chr17g0347631' => 'lal', 'Lj1A1151T82' => 'lonja', 'Lj1A1151T83' => 'lonja', 'Lj1A879T54' => 'lonja', 'Lj2A342T117' => 'lonja', 'Lj3A865T85' => 'lonja', 'Lj6g0007258' => 'lja', 'LjContig00272g0002880' => 'lja', 'Lsat_1_v5_gn_0_47481' => 'lsa', 'Lsat_1_v5_gn_0_6420' => 'lsa', 'Lsat_1_v5_gn_3_102740' => 'lsa', 'Lsat_1_v5_gn_3_138320' => 'lsa', 'Lsat_1_v5_gn_5_3200' => 'lsa', 'Lsat_1_v5_gn_7_113801' => 'lsa', 'Manes.04G047300' => 'mes', 'Manes.15G067500' => 'mes', 'Mapoly0038s0049' => 'mpo', 'Mapoly0135s0050' => 'mpo', 'MBI06_g04395_MAGBIO' => 'mbi', 'MBI14_g20102_MAGBIO' => 'mbi', 'MCO06G271' => 'mco', 'MCO07G431' => 'mco', 'MD04G1045800' => 'mdo', 'MD13G1257900' => 'mdo', 'MD13G1258100' => 'mdo', 'MD15G1397500' => 'mdo', 'Medtr3g040090' => 'mtr', 'Medtr4g096900' => 'mtr', 'Medtr5g088340' => 'mtr', 'Medtr5g093570' => 'mtr', 'MELO3C014189.2' => 'cme', 'MELO3C015704.2' => 'cme', 'Migut.H01801' => 'egut', 'Migut.M02025' => 'egut', 'MSTRG.14456' => 'ama', 'MSTRG.24953' => 'ama', 'Nitab4.5_0000632g0010' => 'nta', 'Nitab4.5_0001907g0020' => 'nta', 'Nitab4.5_0002649g0050' => 'nta', 'Nitab4.5_0003902g0080' => 'nta', 'Nn1g03399' => 'nnu', 'Nn1g07265' => 'nnu', 'Nn2g10363' => 'nnu', 'Oeu010462.1' => 'oeu', 'Oeu010464.1' => 'oeu', 'Oeu013123.1' => 'oeu', 'Oeu037772.1' => 'oeu', 'Os01g0974000' => 'osa', 'Os08g0248800' => 'osa', 'Peaxi162Scf00036g02120' => 'pax', 'Peaxi162Scf00036g02121' => 'pax', 'Peaxi162Scf00276g01115' => 'pax', 'Peaxi162Scf00493g00312' => 'pax', 'Peaxi162Scf00580g00069' => 'pax', 'PGR031G2540' => 'pgr', 'PGR083G0908' => 'pgr', 'PGR093G0005' => 'pgr', 'PGSC0003DMG400000980' => 'stu', 'PGSC0003DMG400007324' => 'stu', 'Phvul.006G021000' => 'pvu', 'Phvul.008G205800' => 'pvu', 'Phvul.008G270600' => 'pvu', 'Potri.001G357200' => 'ptr', 'Potri.007G131700' => 'ptr', 'Potri.017G026100' => 'ptr', 'Pp3c11_8230' => 'ppa', 'Pp3c12_4060' => 'ppa', 'Pp3c1_7810' => 'ppa', 'Pp3c3_12480' => 'ppa', 'PRCOL_00002736' => 'pco', 'PRCOL_00003403' => 'pco', 'Prupe.1G198700' => 'ppe', 'Prupe.4G221200' => 'ppe', 'Psat2g012520' => 'psa', 'Psat2g021160' => 'psa', 'Psat5g187680' => 'psa', 'Psat7g089200' => 'psa', 'PSO063G0678' => 'pso', 'PSO151G0006' => 'pso', 'PSO339G3553' => 'pso', 'QL02p069440' => 'qlo', 'QL06p008756' => 'qlo', 'QL08p007027' => 'qlo', 'QL10p051275' => 'qlo', 'QL11p031638' => 'qlo', 'RcHm_v2.0_Chr2g0118821' => 'rch', 'RcHm_v2.0_Chr4g0402721' => 'rch', 'RcHm_v2.0_Chr6g0264841' => 'rch', 'Rhsim06G0222300' => 'rsi', 'Rhsim07G0082300' => 'rsi', 'Rhsim09G0178000' => 'rsi', 'Sabra07G0106900' => 'sbr', 'Sabra07G0118800' => 'sbr', 'Sabra16G0235200' => 'sbr', 'Sabra17G0000800' => 'sbr', 'Sabra17G0015800' => 'sbr', 'SalBow5G0693' => 'sbo', 'Sc06g0004500' => 'sci', 'Sc07g0004100' => 'sci', 'Sc07g0004110' => 'sci', 'Sc19g0002800' => 'sci', 'Sed0017575' => 'sed', 'Sed0025734' => 'sed', 'SEGI_04192' => 'sgi', 'SEGI_07155' => 'sgi', 'SEGI_07334' => 'sgi', 'SEGI_29547' => 'sgi', 'SEGI_37825' => 'sgi', 'SGA_v2.0_scaffold120G32847' => 'sas', 'SGA_v2.0_scaffold16G07839' => 'sas', 'SHI26581' => 'shi', 'SHI29120' => 'shi', 'SMO339G0015' => 'smo', 'SMO356G0377' => 'smo', 'Solyc02g082030.3' => 'sly', 'Solyc11g006350.1' => 'sly', 'Sopen02g026670' => 'spe', 'Sopen11g002250' => 'spe', 'Sp3g18350' => 'spa', 'Sp3g18360' => 'spa', 'Sp6g12890' => 'spa', 'TAR369G0031' => 'tar', 'TAR623G0168' => 'tar', 'TAR623G1172' => 'tar', 'TAR627G0566' => 'tar', 'TAR629G1251' => 'tar', 'THA.LOC104817851' => 'tha', 'THA.LOC104817853' => 'tha', 'Thecc.04G174100' => 'tca', 'Thecc.07G030500' => 'tca', 'Thhalv10020870m.g' => 'esa', 'Thhalv10020922m.g' => 'esa', 'TPR.G11324' => 'tpr', 'TPR.G1169' => 'tpr', 'TPR.G2908' => 'tpr', 'TWI38G0996' => 'twi', 'TWI38G1671' => 'twi', 'TWI39G1031' => 'twi', 'unitig_748.g7486' => 'ugi', 'unitig_8.g4479' => 'ugi', 'vmacro12410' => 'vma', 'vmacro13897' => 'vma', 'vmacro22326' => 'vma', 'VMungo0540G0891' => 'vmu', 'VMungo0647G1381' => 'vmu', 'VMungo0647G1998' => 'vmu', 'VMungo0647G2153' => 'vmu', 'Zm00001eb139760' => 'zma', 'Zm00001eb178070' => 'zma', 'Zm00001eb362140' => 'zma', 'Zm00001eb412930' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002112', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002112' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002112', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '316', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002112' ) ), 'genes' => array( 'A01p34350' => 'bna', 'A01p34360' => 'bna', 'A05p28600' => 'bna', 'Aa31LG10G3690' => 'aar', 'Aa31LG8G7130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.189' => 'aag', 'Actinidia04201' => 'ach', 'Actinidia05072' => 'ach', 'Actinidia22156' => 'ach', 'Actinidia32273' => 'ach', 'Ah.06g182500' => 'amhyb', 'Ah.14g085620' => 'amhyb', 'AL3G34040' => 'aly', 'AL3G34050' => 'aly', 'Aqoxy1G02961' => 'aox', 'Aqoxy2G01186' => 'aox', 'Aqoxy2G01188' => 'aox', 'Aqoxy7G04120' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4VH6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N9T88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLP8YM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNXW1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM06HE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASA6B' => 'arhy', 'AT3G20320' => 'ath', 'AT3G20330' => 'ath', 'ATR0559G336' => 'atr', 'ATR0772G119' => 'atr', 'Atru.chr1.3234' => 'acertr', 'Atru.chr1.3238' => 'acertr', 'Atru.chr4.1269' => 'acertr', 'AUR62015837' => 'cqu', 'AUR62020382' => 'cqu', 'AUR62031652' => 'cqu', 'AUR62038882' => 'cqu', 'BcaB04g20659' => 'bca', 'BcaB04g20660' => 'bca', 'BcaB06g26098' => 'bca', 'BcaC05g28317' => 'bca', 'BcaC05g28319' => 'bca', 'BcaC09g48987' => 'bca', 'BolC1t04335H' => 'bol', 'BolC5t33119H' => 'bol', 'BolC5t33124H' => 'bol', 'BraA01t03532Z' => 'bra', 'BraA01t03533Z' => 'bra', 'BraA05t21737Z' => 'bra', 'C01p43760' => 'bna', 'C01p43770' => 'bna', 'C05p44010' => 'bna', 'CAN.G1131.18' => 'can', 'CAN.G166.12' => 'can', 'CAN.G321.61' => 'can', 'CAN.G532.29' => 'can', 'CAN.G809.29' => 'can', 'CANSAT01G0306' => 'cansat', 'CANSAT78G1637' => 'cansat', 'CARHR095970' => 'chi', 'CARHR095980' => 'chi', 'Carub.0003s2027' => 'cru', 'Carub.0003s2028' => 'cru', 'Ca_04336_v3' => 'car', 'Ca_06168_v3' => 'car', 'Ca_06185_v3' => 'car', 'Ca_06342_v3' => 'car', 'Ca_18260_v3' => 'car', 'CBR_g24153' => 'cbr', 'CBR_g4282' => 'cbr', 'Cc05_g14160' => 'ccan', 'Cc09_g04780' => 'ccan', 'CDE08G1601' => 'cde', 'CDE12G0428' => 'cde', 'Cfa004646' => 'cfa', 'Cfa020294' => 'cfa', 'Ciclev10020598m.g' => 'ccl', 'Ciclev10025758m.g' => 'ccl', 'CiPaw.01G095700' => 'cil', 'CiPaw.06G167000' => 'cil', 'CiPaw.11G193600' => 'cil', 'ClCG02G003310' => 'cla', 'ClCG04G002470' => 'cla', 'ClCG09G018870' => 'cla', 'ClCG10G005230' => 'cla', 'COL.COLO4_08219' => 'col', 'COL.COLO4_09707' => 'col', 'Cpa.g.c39485' => 'cpa', 'Cpa.g.sc12.257' => 'cpa', 'Cre02.g079700' => 'cre', 'Cre09.g395028' => 'cre', 'Cre16.g694400' => 'cre', 'CsaV3_3G004920' => 'csa', 'CsaV3_7G002030' => 'csa', 'CSS0017930' => 'camsi', 'CSS0048828' => 'camsi', 'DCAR_003742' => 'dca', 'DCAR_007772' => 'dca', 'DCAR_013195' => 'dca', 'Dinv17874' => 'din', 'Dinv21066' => 'din', 'Dinv40788' => 'din', 'Duzib151G0469' => 'dzi', 'Duzib212G0454' => 'dzi', 'Duzib213G0660' => 'dzi', 'ECA236G1011' => 'eca', 'ECA236G4434' => 'eca', 'ECA246G0156' => 'eca', 'ECA246G0582' => 'eca', 'EL10Ac2g03438' => 'bvu', 'EL10Ac4g07746' => 'bvu', 'Eucgr.F03492' => 'egr', 'Eucgr.I00215' => 'egr', 'FAN01G2257' => 'fan', 'FAN03G2363' => 'fan', 'FAN06G0459' => 'fan', 'FAN06G2468' => 'fan', 'FAN07G1453' => 'fan', 'FAN12G4101' => 'fan', 'FAN19G2557' => 'fan', 'FAN22G1550' => 'fan', 'FAN22G2117' => 'fan', 'FAN23G2661' => 'fan', 'FAN26G0200' => 'fan', 'FAN28G2322' => 'fan', 'FvH4_1g23450' => 'fve', 'FvH4_4g09330' => 'fve', 'FvH4_7g16631' => 'fve', 'Glyma.02G275800' => 'gma', 'Glyma.02G293500' => 'gma', 'Glyma.05G131400' => 'gma', 'Glyma.08G086000' => 'gma', 'Glyma.09G110200' => 'gma', 'Glyma.13G074600' => 'gma', 'Glyma.14G021000' => 'gma', 'Glyma.14G040300' => 'gma', 'Glyma.20G048400' => 'gma', 'Gohir.1Z049537' => 'ghi', 'Gohir.A02G114100' => 'ghi', 'Gohir.A08G072300' => 'ghi', 'Gohir.A08G075500' => 'ghi', 'Gohir.A10G139900' => 'ghi', 'Gohir.D05G373500' => 'ghi', 'Gohir.D10G126900' => 'ghi', 'Gorai.009G442200' => 'gra', 'Gorai.011G139800' => 'gra', 'GSVIVG01010853001' => 'vvi', 'GSVIVG01037706001' => 'vvi', 'HanXRQChr02g0033051' => 'han', 'HanXRQChr08g0233571' => 'han', 'HanXRQChr12g0380031' => 'han', 'HanXRQChr15g0470591' => 'han', 'Haze_01451' => 'cav', 'Haze_09725' => 'cav', 'Haze_10243' => 'cav', 'Hma1.2p1_0036F.1_g023230' => 'hma', 'Hma1.2p1_1220F.1_g268110' => 'hma', 'Hma1.2p1_1220F.1_g268115' => 'hma', 'Hma1.2p1_2907F.1_g330140' => 'hma', 'Hma1.2p1_2907F.1_g330145' => 'hma', 'HPP92_018143' => 'vpl', 'HPP92_018526' => 'vpl', 'Hund03181' => 'sun', 'Hund23211' => 'sun', 'Lalb_Chr04g0249531' => 'lal', 'Lalb_Chr12g0209021' => 'lal', 'Lalb_Chr17g0347631' => 'lal', 'Lj1A1151T82' => 'lonja', 'Lj1A1151T83' => 'lonja', 'Lj1A879T54' => 'lonja', 'Lj2A342T117' => 'lonja', 'Lj3A865T85' => 'lonja', 'Lj6g0007258' => 'lja', 'LjContig00272g0002880' => 'lja', 'Lsat_1_v5_gn_0_47481' => 'lsa', 'Lsat_1_v5_gn_0_6420' => 'lsa', 'Lsat_1_v5_gn_3_102740' => 'lsa', 'Lsat_1_v5_gn_3_138320' => 'lsa', 'Lsat_1_v5_gn_5_3200' => 'lsa', 'Lsat_1_v5_gn_7_113801' => 'lsa', 'Manes.04G047300' => 'mes', 'Manes.15G067500' => 'mes', 'Mapoly0038s0049' => 'mpo', 'Mapoly0135s0050' => 'mpo', 'MBI06_g04395_MAGBIO' => 'mbi', 'MBI14_g20102_MAGBIO' => 'mbi', 'MCO06G271' => 'mco', 'MCO07G431' => 'mco', 'MD04G1045800' => 'mdo', 'MD13G1257900' => 'mdo', 'MD13G1258100' => 'mdo', 'MD15G1397500' => 'mdo', 'Medtr3g040090' => 'mtr', 'Medtr4g096900' => 'mtr', 'Medtr5g088340' => 'mtr', 'Medtr5g093570' => 'mtr', 'MELO3C014189.2' => 'cme', 'MELO3C015704.2' => 'cme', 'Migut.H01801' => 'egut', 'Migut.M02025' => 'egut', 'MSTRG.14456' => 'ama', 'MSTRG.24953' => 'ama', 'Nitab4.5_0000632g0010' => 'nta', 'Nitab4.5_0001907g0020' => 'nta', 'Nitab4.5_0002649g0050' => 'nta', 'Nitab4.5_0003902g0080' => 'nta', 'Nn1g03399' => 'nnu', 'Nn1g07265' => 'nnu', 'Nn2g10363' => 'nnu', 'Oeu010462.1' => 'oeu', 'Oeu010464.1' => 'oeu', 'Oeu013123.1' => 'oeu', 'Oeu037772.1' => 'oeu', 'Os01g0974000' => 'osa', 'Os08g0248800' => 'osa', 'Peaxi162Scf00036g02120' => 'pax', 'Peaxi162Scf00036g02121' => 'pax', 'Peaxi162Scf00276g01115' => 'pax', 'Peaxi162Scf00493g00312' => 'pax', 'Peaxi162Scf00580g00069' => 'pax', 'PGR031G2540' => 'pgr', 'PGR083G0908' => 'pgr', 'PGR093G0005' => 'pgr', 'PGSC0003DMG400000980' => 'stu', 'PGSC0003DMG400007324' => 'stu', 'Phvul.006G021000' => 'pvu', 'Phvul.008G205800' => 'pvu', 'Phvul.008G270600' => 'pvu', 'Potri.001G357200' => 'ptr', 'Potri.007G131700' => 'ptr', 'Potri.017G026100' => 'ptr', 'Pp3c11_8230' => 'ppa', 'Pp3c12_4060' => 'ppa', 'Pp3c1_7810' => 'ppa', 'Pp3c3_12480' => 'ppa', 'PRCOL_00002736' => 'pco', 'PRCOL_00003403' => 'pco', 'Prupe.1G198700' => 'ppe', 'Prupe.4G221200' => 'ppe', 'Psat2g012520' => 'psa', 'Psat2g021160' => 'psa', 'Psat5g187680' => 'psa', 'Psat7g089200' => 'psa', 'PSO063G0678' => 'pso', 'PSO151G0006' => 'pso', 'PSO339G3553' => 'pso', 'QL02p069440' => 'qlo', 'QL06p008756' => 'qlo', 'QL08p007027' => 'qlo', 'QL10p051275' => 'qlo', 'QL11p031638' => 'qlo', 'RcHm_v2.0_Chr2g0118821' => 'rch', 'RcHm_v2.0_Chr4g0402721' => 'rch', 'RcHm_v2.0_Chr6g0264841' => 'rch', 'Rhsim06G0222300' => 'rsi', 'Rhsim07G0082300' => 'rsi', 'Rhsim09G0178000' => 'rsi', 'Sabra07G0106900' => 'sbr', 'Sabra07G0118800' => 'sbr', 'Sabra16G0235200' => 'sbr', 'Sabra17G0000800' => 'sbr', 'Sabra17G0015800' => 'sbr', 'SalBow5G0693' => 'sbo', 'Sc06g0004500' => 'sci', 'Sc07g0004100' => 'sci', 'Sc07g0004110' => 'sci', 'Sc19g0002800' => 'sci', 'Sed0017575' => 'sed', 'Sed0025734' => 'sed', 'SEGI_04192' => 'sgi', 'SEGI_07155' => 'sgi', 'SEGI_07334' => 'sgi', 'SEGI_29547' => 'sgi', 'SEGI_37825' => 'sgi', 'SGA_v2.0_scaffold120G32847' => 'sas', 'SGA_v2.0_scaffold16G07839' => 'sas', 'SHI26581' => 'shi', 'SHI29120' => 'shi', 'SMO339G0015' => 'smo', 'SMO356G0377' => 'smo', 'Solyc02g082030.3' => 'sly', 'Solyc11g006350.1' => 'sly', 'Sopen02g026670' => 'spe', 'Sopen11g002250' => 'spe', 'Sp3g18350' => 'spa', 'Sp3g18360' => 'spa', 'Sp6g12890' => 'spa', 'TAR369G0031' => 'tar', 'TAR623G0168' => 'tar', 'TAR623G1172' => 'tar', 'TAR627G0566' => 'tar', 'TAR629G1251' => 'tar', 'THA.LOC104817851' => 'tha', 'THA.LOC104817853' => 'tha', 'Thecc.04G174100' => 'tca', 'Thecc.07G030500' => 'tca', 'Thhalv10020870m.g' => 'esa', 'Thhalv10020922m.g' => 'esa', 'TPR.G11324' => 'tpr', 'TPR.G1169' => 'tpr', 'TPR.G2908' => 'tpr', 'TWI38G0996' => 'twi', 'TWI38G1671' => 'twi', 'TWI39G1031' => 'twi', 'unitig_748.g7486' => 'ugi', 'unitig_8.g4479' => 'ugi', 'vmacro12410' => 'vma', 'vmacro13897' => 'vma', 'vmacro22326' => 'vma', 'VMungo0540G0891' => 'vmu', 'VMungo0647G1381' => 'vmu', 'VMungo0647G1998' => 'vmu', 'VMungo0647G2153' => 'vmu', 'Zm00001eb139760' => 'zma', 'Zm00001eb178070' => 'zma', 'Zm00001eb362140' => 'zma', 'Zm00001eb412930' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002112' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002112' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002112' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002112' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002112', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '316', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p34350' => 'bna', 'A01p34360' => 'bna', 'A05p28600' => 'bna', 'Aa31LG10G3690' => 'aar', 'Aa31LG8G7130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.189' => 'aag', 'Actinidia04201' => 'ach', 'Actinidia05072' => 'ach', 'Actinidia22156' => 'ach', 'Actinidia32273' => 'ach', 'Ah.06g182500' => 'amhyb', 'Ah.14g085620' => 'amhyb', 'AL3G34040' => 'aly', 'AL3G34050' => 'aly', 'Aqoxy1G02961' => 'aox', 'Aqoxy2G01186' => 'aox', 'Aqoxy2G01188' => 'aox', 'Aqoxy7G04120' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4VH6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N9T88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLP8YM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNXW1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM06HE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASA6B' => 'arhy', 'AT3G20320' => 'ath', 'AT3G20330' => 'ath', 'ATR0559G336' => 'atr', 'ATR0772G119' => 'atr', 'Atru.chr1.3234' => 'acertr', 'Atru.chr1.3238' => 'acertr', 'Atru.chr4.1269' => 'acertr', 'AUR62015837' => 'cqu', 'AUR62020382' => 'cqu', 'AUR62031652' => 'cqu', 'AUR62038882' => 'cqu', 'BcaB04g20659' => 'bca', 'BcaB04g20660' => 'bca', 'BcaB06g26098' => 'bca', 'BcaC05g28317' => 'bca', 'BcaC05g28319' => 'bca', 'BcaC09g48987' => 'bca', 'BolC1t04335H' => 'bol', 'BolC5t33119H' => 'bol', 'BolC5t33124H' => 'bol', 'BraA01t03532Z' => 'bra', 'BraA01t03533Z' => 'bra', 'BraA05t21737Z' => 'bra', 'C01p43760' => 'bna', 'C01p43770' => 'bna', 'C05p44010' => 'bna', 'CAN.G1131.18' => 'can', 'CAN.G166.12' => 'can', 'CAN.G321.61' => 'can', 'CAN.G532.29' => 'can', 'CAN.G809.29' => 'can', 'CANSAT01G0306' => 'cansat', 'CANSAT78G1637' => 'cansat', 'CARHR095970' => 'chi', 'CARHR095980' => 'chi', 'Carub.0003s2027' => 'cru', 'Carub.0003s2028' => 'cru', 'Ca_04336_v3' => 'car', 'Ca_06168_v3' => 'car', 'Ca_06185_v3' => 'car', 'Ca_06342_v3' => 'car', 'Ca_18260_v3' => 'car', 'CBR_g24153' => 'cbr', 'CBR_g4282' => 'cbr', 'Cc05_g14160' => 'ccan', 'Cc09_g04780' => 'ccan', 'CDE08G1601' => 'cde', 'CDE12G0428' => 'cde', 'Cfa004646' => 'cfa', 'Cfa020294' => 'cfa', 'Ciclev10020598m.g' => 'ccl', 'Ciclev10025758m.g' => 'ccl', 'CiPaw.01G095700' => 'cil', 'CiPaw.06G167000' => 'cil', 'CiPaw.11G193600' => 'cil', 'ClCG02G003310' => 'cla', 'ClCG04G002470' => 'cla', 'ClCG09G018870' => 'cla', 'ClCG10G005230' => 'cla', 'COL.COLO4_08219' => 'col', 'COL.COLO4_09707' => 'col', 'Cpa.g.c39485' => 'cpa', 'Cpa.g.sc12.257' => 'cpa', 'Cre02.g079700' => 'cre', 'Cre09.g395028' => 'cre', 'Cre16.g694400' => 'cre', 'CsaV3_3G004920' => 'csa', 'CsaV3_7G002030' => 'csa', 'CSS0017930' => 'camsi', 'CSS0048828' => 'camsi', 'DCAR_003742' => 'dca', 'DCAR_007772' => 'dca', 'DCAR_013195' => 'dca', 'Dinv17874' => 'din', 'Dinv21066' => 'din', 'Dinv40788' => 'din', 'Duzib151G0469' => 'dzi', 'Duzib212G0454' => 'dzi', 'Duzib213G0660' => 'dzi', 'ECA236G1011' => 'eca', 'ECA236G4434' => 'eca', 'ECA246G0156' => 'eca', 'ECA246G0582' => 'eca', 'EL10Ac2g03438' => 'bvu', 'EL10Ac4g07746' => 'bvu', 'Eucgr.F03492' => 'egr', 'Eucgr.I00215' => 'egr', 'FAN01G2257' => 'fan', 'FAN03G2363' => 'fan', 'FAN06G0459' => 'fan', 'FAN06G2468' => 'fan', 'FAN07G1453' => 'fan', 'FAN12G4101' => 'fan', 'FAN19G2557' => 'fan', 'FAN22G1550' => 'fan', 'FAN22G2117' => 'fan', 'FAN23G2661' => 'fan', 'FAN26G0200' => 'fan', 'FAN28G2322' => 'fan', 'FvH4_1g23450' => 'fve', 'FvH4_4g09330' => 'fve', 'FvH4_7g16631' => 'fve', 'Glyma.02G275800' => 'gma', 'Glyma.02G293500' => 'gma', 'Glyma.05G131400' => 'gma', 'Glyma.08G086000' => 'gma', 'Glyma.09G110200' => 'gma', 'Glyma.13G074600' => 'gma', 'Glyma.14G021000' => 'gma', 'Glyma.14G040300' => 'gma', 'Glyma.20G048400' => 'gma', 'Gohir.1Z049537' => 'ghi', 'Gohir.A02G114100' => 'ghi', 'Gohir.A08G072300' => 'ghi', 'Gohir.A08G075500' => 'ghi', 'Gohir.A10G139900' => 'ghi', 'Gohir.D05G373500' => 'ghi', 'Gohir.D10G126900' => 'ghi', 'Gorai.009G442200' => 'gra', 'Gorai.011G139800' => 'gra', 'GSVIVG01010853001' => 'vvi', 'GSVIVG01037706001' => 'vvi', 'HanXRQChr02g0033051' => 'han', 'HanXRQChr08g0233571' => 'han', 'HanXRQChr12g0380031' => 'han', 'HanXRQChr15g0470591' => 'han', 'Haze_01451' => 'cav', 'Haze_09725' => 'cav', 'Haze_10243' => 'cav', 'Hma1.2p1_0036F.1_g023230' => 'hma', 'Hma1.2p1_1220F.1_g268110' => 'hma', 'Hma1.2p1_1220F.1_g268115' => 'hma', 'Hma1.2p1_2907F.1_g330140' => 'hma', 'Hma1.2p1_2907F.1_g330145' => 'hma', 'HPP92_018143' => 'vpl', 'HPP92_018526' => 'vpl', 'Hund03181' => 'sun', 'Hund23211' => 'sun', 'Lalb_Chr04g0249531' => 'lal', 'Lalb_Chr12g0209021' => 'lal', 'Lalb_Chr17g0347631' => 'lal', 'Lj1A1151T82' => 'lonja', 'Lj1A1151T83' => 'lonja', 'Lj1A879T54' => 'lonja', 'Lj2A342T117' => 'lonja', 'Lj3A865T85' => 'lonja', 'Lj6g0007258' => 'lja', 'LjContig00272g0002880' => 'lja', 'Lsat_1_v5_gn_0_47481' => 'lsa', 'Lsat_1_v5_gn_0_6420' => 'lsa', 'Lsat_1_v5_gn_3_102740' => 'lsa', 'Lsat_1_v5_gn_3_138320' => 'lsa', 'Lsat_1_v5_gn_5_3200' => 'lsa', 'Lsat_1_v5_gn_7_113801' => 'lsa', 'Manes.04G047300' => 'mes', 'Manes.15G067500' => 'mes', 'Mapoly0038s0049' => 'mpo', 'Mapoly0135s0050' => 'mpo', 'MBI06_g04395_MAGBIO' => 'mbi', 'MBI14_g20102_MAGBIO' => 'mbi', 'MCO06G271' => 'mco', 'MCO07G431' => 'mco', 'MD04G1045800' => 'mdo', 'MD13G1257900' => 'mdo', 'MD13G1258100' => 'mdo', 'MD15G1397500' => 'mdo', 'Medtr3g040090' => 'mtr', 'Medtr4g096900' => 'mtr', 'Medtr5g088340' => 'mtr', 'Medtr5g093570' => 'mtr', 'MELO3C014189.2' => 'cme', 'MELO3C015704.2' => 'cme', 'Migut.H01801' => 'egut', 'Migut.M02025' => 'egut', 'MSTRG.14456' => 'ama', 'MSTRG.24953' => 'ama', 'Nitab4.5_0000632g0010' => 'nta', 'Nitab4.5_0001907g0020' => 'nta', 'Nitab4.5_0002649g0050' => 'nta', 'Nitab4.5_0003902g0080' => 'nta', 'Nn1g03399' => 'nnu', 'Nn1g07265' => 'nnu', 'Nn2g10363' => 'nnu', 'Oeu010462.1' => 'oeu', 'Oeu010464.1' => 'oeu', 'Oeu013123.1' => 'oeu', 'Oeu037772.1' => 'oeu', 'Os01g0974000' => 'osa', 'Os08g0248800' => 'osa', 'Peaxi162Scf00036g02120' => 'pax', 'Peaxi162Scf00036g02121' => 'pax', 'Peaxi162Scf00276g01115' => 'pax', 'Peaxi162Scf00493g00312' => 'pax', 'Peaxi162Scf00580g00069' => 'pax', 'PGR031G2540' => 'pgr', 'PGR083G0908' => 'pgr', 'PGR093G0005' => 'pgr', 'PGSC0003DMG400000980' => 'stu', 'PGSC0003DMG400007324' => 'stu', 'Phvul.006G021000' => 'pvu', 'Phvul.008G205800' => 'pvu', 'Phvul.008G270600' => 'pvu', 'Potri.001G357200' => 'ptr', 'Potri.007G131700' => 'ptr', 'Potri.017G026100' => 'ptr', 'Pp3c11_8230' => 'ppa', 'Pp3c12_4060' => 'ppa', 'Pp3c1_7810' => 'ppa', 'Pp3c3_12480' => 'ppa', 'PRCOL_00002736' => 'pco', 'PRCOL_00003403' => 'pco', 'Prupe.1G198700' => 'ppe', 'Prupe.4G221200' => 'ppe', 'Psat2g012520' => 'psa', 'Psat2g021160' => 'psa', 'Psat5g187680' => 'psa', 'Psat7g089200' => 'psa', 'PSO063G0678' => 'pso', 'PSO151G0006' => 'pso', 'PSO339G3553' => 'pso', 'QL02p069440' => 'qlo', 'QL06p008756' => 'qlo', 'QL08p007027' => 'qlo', 'QL10p051275' => 'qlo', 'QL11p031638' => 'qlo', 'RcHm_v2.0_Chr2g0118821' => 'rch', 'RcHm_v2.0_Chr4g0402721' => 'rch', 'RcHm_v2.0_Chr6g0264841' => 'rch', 'Rhsim06G0222300' => 'rsi', 'Rhsim07G0082300' => 'rsi', 'Rhsim09G0178000' => 'rsi', 'Sabra07G0106900' => 'sbr', 'Sabra07G0118800' => 'sbr', 'Sabra16G0235200' => 'sbr', 'Sabra17G0000800' => 'sbr', 'Sabra17G0015800' => 'sbr', 'SalBow5G0693' => 'sbo', 'Sc06g0004500' => 'sci', 'Sc07g0004100' => 'sci', 'Sc07g0004110' => 'sci', 'Sc19g0002800' => 'sci', 'Sed0017575' => 'sed', 'Sed0025734' => 'sed', 'SEGI_04192' => 'sgi', 'SEGI_07155' => 'sgi', 'SEGI_07334' => 'sgi', 'SEGI_29547' => 'sgi', 'SEGI_37825' => 'sgi', 'SGA_v2.0_scaffold120G32847' => 'sas', 'SGA_v2.0_scaffold16G07839' => 'sas', 'SHI26581' => 'shi', 'SHI29120' => 'shi', 'SMO339G0015' => 'smo', 'SMO356G0377' => 'smo', 'Solyc02g082030.3' => 'sly', 'Solyc11g006350.1' => 'sly', 'Sopen02g026670' => 'spe', 'Sopen11g002250' => 'spe', 'Sp3g18350' => 'spa', 'Sp3g18360' => 'spa', 'Sp6g12890' => 'spa', 'TAR369G0031' => 'tar', 'TAR623G0168' => 'tar', 'TAR623G1172' => 'tar', 'TAR627G0566' => 'tar', 'TAR629G1251' => 'tar', 'THA.LOC104817851' => 'tha', 'THA.LOC104817853' => 'tha', 'Thecc.04G174100' => 'tca', 'Thecc.07G030500' => 'tca', 'Thhalv10020870m.g' => 'esa', 'Thhalv10020922m.g' => 'esa', 'TPR.G11324' => 'tpr', 'TPR.G1169' => 'tpr', 'TPR.G2908' => 'tpr', 'TWI38G0996' => 'twi', 'TWI38G1671' => 'twi', 'TWI39G1031' => 'twi', 'unitig_748.g7486' => 'ugi', 'unitig_8.g4479' => 'ugi', 'vmacro12410' => 'vma', 'vmacro13897' => 'vma', 'vmacro22326' => 'vma', 'VMungo0540G0891' => 'vmu', 'VMungo0647G1381' => 'vmu', 'VMungo0647G1998' => 'vmu', 'VMungo0647G2153' => 'vmu', 'Zm00001eb139760' => 'zma', 'Zm00001eb178070' => 'zma', 'Zm00001eb362140' => 'zma', 'Zm00001eb412930' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002112', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002112' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002112', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '316', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002112' ) ), 'genes' => array( 'A01p34350' => 'bna', 'A01p34360' => 'bna', 'A05p28600' => 'bna', 'Aa31LG10G3690' => 'aar', 'Aa31LG8G7130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.189' => 'aag', 'Actinidia04201' => 'ach', 'Actinidia05072' => 'ach', 'Actinidia22156' => 'ach', 'Actinidia32273' => 'ach', 'Ah.06g182500' => 'amhyb', 'Ah.14g085620' => 'amhyb', 'AL3G34040' => 'aly', 'AL3G34050' => 'aly', 'Aqoxy1G02961' => 'aox', 'Aqoxy2G01186' => 'aox', 'Aqoxy2G01188' => 'aox', 'Aqoxy7G04120' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4VH6VS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N9T88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLP8YM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNXW1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM06HE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZASA6B' => 'arhy', 'AT3G20320' => 'ath', 'AT3G20330' => 'ath', 'ATR0559G336' => 'atr', 'ATR0772G119' => 'atr', 'Atru.chr1.3234' => 'acertr', 'Atru.chr1.3238' => 'acertr', 'Atru.chr4.1269' => 'acertr', 'AUR62015837' => 'cqu', 'AUR62020382' => 'cqu', 'AUR62031652' => 'cqu', 'AUR62038882' => 'cqu', 'BcaB04g20659' => 'bca', 'BcaB04g20660' => 'bca', 'BcaB06g26098' => 'bca', 'BcaC05g28317' => 'bca', 'BcaC05g28319' => 'bca', 'BcaC09g48987' => 'bca', 'BolC1t04335H' => 'bol', 'BolC5t33119H' => 'bol', 'BolC5t33124H' => 'bol', 'BraA01t03532Z' => 'bra', 'BraA01t03533Z' => 'bra', 'BraA05t21737Z' => 'bra', 'C01p43760' => 'bna', 'C01p43770' => 'bna', 'C05p44010' => 'bna', 'CAN.G1131.18' => 'can', 'CAN.G166.12' => 'can', 'CAN.G321.61' => 'can', 'CAN.G532.29' => 'can', 'CAN.G809.29' => 'can', 'CANSAT01G0306' => 'cansat', 'CANSAT78G1637' => 'cansat', 'CARHR095970' => 'chi', 'CARHR095980' => 'chi', 'Carub.0003s2027' => 'cru', 'Carub.0003s2028' => 'cru', 'Ca_04336_v3' => 'car', 'Ca_06168_v3' => 'car', 'Ca_06185_v3' => 'car', 'Ca_06342_v3' => 'car', 'Ca_18260_v3' => 'car', 'CBR_g24153' => 'cbr', 'CBR_g4282' => 'cbr', 'Cc05_g14160' => 'ccan', 'Cc09_g04780' => 'ccan', 'CDE08G1601' => 'cde', 'CDE12G0428' => 'cde', 'Cfa004646' => 'cfa', 'Cfa020294' => 'cfa', 'Ciclev10020598m.g' => 'ccl', 'Ciclev10025758m.g' => 'ccl', 'CiPaw.01G095700' => 'cil', 'CiPaw.06G167000' => 'cil', 'CiPaw.11G193600' => 'cil', 'ClCG02G003310' => 'cla', 'ClCG04G002470' => 'cla', 'ClCG09G018870' => 'cla', 'ClCG10G005230' => 'cla', 'COL.COLO4_08219' => 'col', 'COL.COLO4_09707' => 'col', 'Cpa.g.c39485' => 'cpa', 'Cpa.g.sc12.257' => 'cpa', 'Cre02.g079700' => 'cre', 'Cre09.g395028' => 'cre', 'Cre16.g694400' => 'cre', 'CsaV3_3G004920' => 'csa', 'CsaV3_7G002030' => 'csa', 'CSS0017930' => 'camsi', 'CSS0048828' => 'camsi', 'DCAR_003742' => 'dca', 'DCAR_007772' => 'dca', 'DCAR_013195' => 'dca', 'Dinv17874' => 'din', 'Dinv21066' => 'din', 'Dinv40788' => 'din', 'Duzib151G0469' => 'dzi', 'Duzib212G0454' => 'dzi', 'Duzib213G0660' => 'dzi', 'ECA236G1011' => 'eca', 'ECA236G4434' => 'eca', 'ECA246G0156' => 'eca', 'ECA246G0582' => 'eca', 'EL10Ac2g03438' => 'bvu', 'EL10Ac4g07746' => 'bvu', 'Eucgr.F03492' => 'egr', 'Eucgr.I00215' => 'egr', 'FAN01G2257' => 'fan', 'FAN03G2363' => 'fan', 'FAN06G0459' => 'fan', 'FAN06G2468' => 'fan', 'FAN07G1453' => 'fan', 'FAN12G4101' => 'fan', 'FAN19G2557' => 'fan', 'FAN22G1550' => 'fan', 'FAN22G2117' => 'fan', 'FAN23G2661' => 'fan', 'FAN26G0200' => 'fan', 'FAN28G2322' => 'fan', 'FvH4_1g23450' => 'fve', 'FvH4_4g09330' => 'fve', 'FvH4_7g16631' => 'fve', 'Glyma.02G275800' => 'gma', 'Glyma.02G293500' => 'gma', 'Glyma.05G131400' => 'gma', 'Glyma.08G086000' => 'gma', 'Glyma.09G110200' => 'gma', 'Glyma.13G074600' => 'gma', 'Glyma.14G021000' => 'gma', 'Glyma.14G040300' => 'gma', 'Glyma.20G048400' => 'gma', 'Gohir.1Z049537' => 'ghi', 'Gohir.A02G114100' => 'ghi', 'Gohir.A08G072300' => 'ghi', 'Gohir.A08G075500' => 'ghi', 'Gohir.A10G139900' => 'ghi', 'Gohir.D05G373500' => 'ghi', 'Gohir.D10G126900' => 'ghi', 'Gorai.009G442200' => 'gra', 'Gorai.011G139800' => 'gra', 'GSVIVG01010853001' => 'vvi', 'GSVIVG01037706001' => 'vvi', 'HanXRQChr02g0033051' => 'han', 'HanXRQChr08g0233571' => 'han', 'HanXRQChr12g0380031' => 'han', 'HanXRQChr15g0470591' => 'han', 'Haze_01451' => 'cav', 'Haze_09725' => 'cav', 'Haze_10243' => 'cav', 'Hma1.2p1_0036F.1_g023230' => 'hma', 'Hma1.2p1_1220F.1_g268110' => 'hma', 'Hma1.2p1_1220F.1_g268115' => 'hma', 'Hma1.2p1_2907F.1_g330140' => 'hma', 'Hma1.2p1_2907F.1_g330145' => 'hma', 'HPP92_018143' => 'vpl', 'HPP92_018526' => 'vpl', 'Hund03181' => 'sun', 'Hund23211' => 'sun', 'Lalb_Chr04g0249531' => 'lal', 'Lalb_Chr12g0209021' => 'lal', 'Lalb_Chr17g0347631' => 'lal', 'Lj1A1151T82' => 'lonja', 'Lj1A1151T83' => 'lonja', 'Lj1A879T54' => 'lonja', 'Lj2A342T117' => 'lonja', 'Lj3A865T85' => 'lonja', 'Lj6g0007258' => 'lja', 'LjContig00272g0002880' => 'lja', 'Lsat_1_v5_gn_0_47481' => 'lsa', 'Lsat_1_v5_gn_0_6420' => 'lsa', 'Lsat_1_v5_gn_3_102740' => 'lsa', 'Lsat_1_v5_gn_3_138320' => 'lsa', 'Lsat_1_v5_gn_5_3200' => 'lsa', 'Lsat_1_v5_gn_7_113801' => 'lsa', 'Manes.04G047300' => 'mes', 'Manes.15G067500' => 'mes', 'Mapoly0038s0049' => 'mpo', 'Mapoly0135s0050' => 'mpo', 'MBI06_g04395_MAGBIO' => 'mbi', 'MBI14_g20102_MAGBIO' => 'mbi', 'MCO06G271' => 'mco', 'MCO07G431' => 'mco', 'MD04G1045800' => 'mdo', 'MD13G1257900' => 'mdo', 'MD13G1258100' => 'mdo', 'MD15G1397500' => 'mdo', 'Medtr3g040090' => 'mtr', 'Medtr4g096900' => 'mtr', 'Medtr5g088340' => 'mtr', 'Medtr5g093570' => 'mtr', 'MELO3C014189.2' => 'cme', 'MELO3C015704.2' => 'cme', 'Migut.H01801' => 'egut', 'Migut.M02025' => 'egut', 'MSTRG.14456' => 'ama', 'MSTRG.24953' => 'ama', 'Nitab4.5_0000632g0010' => 'nta', 'Nitab4.5_0001907g0020' => 'nta', 'Nitab4.5_0002649g0050' => 'nta', 'Nitab4.5_0003902g0080' => 'nta', 'Nn1g03399' => 'nnu', 'Nn1g07265' => 'nnu', 'Nn2g10363' => 'nnu', 'Oeu010462.1' => 'oeu', 'Oeu010464.1' => 'oeu', 'Oeu013123.1' => 'oeu', 'Oeu037772.1' => 'oeu', 'Os01g0974000' => 'osa', 'Os08g0248800' => 'osa', 'Peaxi162Scf00036g02120' => 'pax', 'Peaxi162Scf00036g02121' => 'pax', 'Peaxi162Scf00276g01115' => 'pax', 'Peaxi162Scf00493g00312' => 'pax', 'Peaxi162Scf00580g00069' => 'pax', 'PGR031G2540' => 'pgr', 'PGR083G0908' => 'pgr', 'PGR093G0005' => 'pgr', 'PGSC0003DMG400000980' => 'stu', 'PGSC0003DMG400007324' => 'stu', 'Phvul.006G021000' => 'pvu', 'Phvul.008G205800' => 'pvu', 'Phvul.008G270600' => 'pvu', 'Potri.001G357200' => 'ptr', 'Potri.007G131700' => 'ptr', 'Potri.017G026100' => 'ptr', 'Pp3c11_8230' => 'ppa', 'Pp3c12_4060' => 'ppa', 'Pp3c1_7810' => 'ppa', 'Pp3c3_12480' => 'ppa', 'PRCOL_00002736' => 'pco', 'PRCOL_00003403' => 'pco', 'Prupe.1G198700' => 'ppe', 'Prupe.4G221200' => 'ppe', 'Psat2g012520' => 'psa', 'Psat2g021160' => 'psa', 'Psat5g187680' => 'psa', 'Psat7g089200' => 'psa', 'PSO063G0678' => 'pso', 'PSO151G0006' => 'pso', 'PSO339G3553' => 'pso', 'QL02p069440' => 'qlo', 'QL06p008756' => 'qlo', 'QL08p007027' => 'qlo', 'QL10p051275' => 'qlo', 'QL11p031638' => 'qlo', 'RcHm_v2.0_Chr2g0118821' => 'rch', 'RcHm_v2.0_Chr4g0402721' => 'rch', 'RcHm_v2.0_Chr6g0264841' => 'rch', 'Rhsim06G0222300' => 'rsi', 'Rhsim07G0082300' => 'rsi', 'Rhsim09G0178000' => 'rsi', 'Sabra07G0106900' => 'sbr', 'Sabra07G0118800' => 'sbr', 'Sabra16G0235200' => 'sbr', 'Sabra17G0000800' => 'sbr', 'Sabra17G0015800' => 'sbr', 'SalBow5G0693' => 'sbo', 'Sc06g0004500' => 'sci', 'Sc07g0004100' => 'sci', 'Sc07g0004110' => 'sci', 'Sc19g0002800' => 'sci', 'Sed0017575' => 'sed', 'Sed0025734' => 'sed', 'SEGI_04192' => 'sgi', 'SEGI_07155' => 'sgi', 'SEGI_07334' => 'sgi', 'SEGI_29547' => 'sgi', 'SEGI_37825' => 'sgi', 'SGA_v2.0_scaffold120G32847' => 'sas', 'SGA_v2.0_scaffold16G07839' => 'sas', 'SHI26581' => 'shi', 'SHI29120' => 'shi', 'SMO339G0015' => 'smo', 'SMO356G0377' => 'smo', 'Solyc02g082030.3' => 'sly', 'Solyc11g006350.1' => 'sly', 'Sopen02g026670' => 'spe', 'Sopen11g002250' => 'spe', 'Sp3g18350' => 'spa', 'Sp3g18360' => 'spa', 'Sp6g12890' => 'spa', 'TAR369G0031' => 'tar', 'TAR623G0168' => 'tar', 'TAR623G1172' => 'tar', 'TAR627G0566' => 'tar', 'TAR629G1251' => 'tar', 'THA.LOC104817851' => 'tha', 'THA.LOC104817853' => 'tha', 'Thecc.04G174100' => 'tca', 'Thecc.07G030500' => 'tca', 'Thhalv10020870m.g' => 'esa', 'Thhalv10020922m.g' => 'esa', 'TPR.G11324' => 'tpr', 'TPR.G1169' => 'tpr', 'TPR.G2908' => 'tpr', 'TWI38G0996' => 'twi', 'TWI38G1671' => 'twi', 'TWI39G1031' => 'twi', 'unitig_748.g7486' => 'ugi', 'unitig_8.g4479' => 'ugi', 'vmacro12410' => 'vma', 'vmacro13897' => 'vma', 'vmacro22326' => 'vma', 'VMungo0540G0891' => 'vmu', 'VMungo0647G1381' => 'vmu', 'VMungo0647G1998' => 'vmu', 'VMungo0647G2153' => 'vmu', 'Zm00001eb139760' => 'zma', 'Zm00001eb178070' => 'zma', 'Zm00001eb362140' => 'zma', 'Zm00001eb412930' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002112' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002112' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002112' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002112' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151