Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 2.3e-65 251.9 114 100.0
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 1.7e-44 182.6 111 68.5
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 2.0e-40 169.1 111 64.9
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 2.2e-39 165.6 113 63.7
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 8.6e-36 153.7 112 60.7
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 2.5e-35 152.1 112 58.9
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 1.6e-34 149.4 112 58.9
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 2.1e-34 149.1 113 60.2
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 2.1e-34 149.1 112 57.1
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 2.8e-34 148.7 112 58.0
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 2.8e-34 148.7 112 54.5
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 8.1e-34 147.1 112 58.9
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 2.3e-33 145.6 114 56.1
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 5.2e-33 144.4 112 57.1
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 5.2e-33 144.4 112 57.1
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 2.0e-32 142.5 112 58.0
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 3.4e-32 141.7 110 56.4
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 5.8e-32 141.0 112 54.5
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 2.2e-31 139.0 112 52.7
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 2.2e-31 139.0 112 52.7
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 2.2e-31 139.0 113 57.5
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 2.2e-31 139.0 113 57.5
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 2.2e-31 139.0 113 57.5
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 2.9e-31 138.7 110 53.6
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 3.8e-31 138.3 112 51.8
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 6.4e-31 137.5 113 53.1
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 6.4e-31 137.5 113 53.1
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 6.4e-31 137.5 113 53.1
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 6.4e-31 137.5 113 53.1
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 6.4e-31 137.5 113 54.0
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 1.1e-30 136.7 112 54.5
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 1.4e-30 136.3 110 54.5
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 1.4e-30 136.3 113 54.0
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 1.4e-30 136.3 113 56.6
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.4e-30 135.6 113 55.8
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 2.4e-30 135.6 113 55.8
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 2.4e-30 135.6 112 52.7
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 2.4e-30 135.6 112 52.7
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 3.2e-30 135.2 113 50.4
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 4.1e-30 134.8 113 55.8
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 4.1e-30 134.8 113 54.9
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 4.1e-30 134.8 112 50.9
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 5.4e-30 134.4 113 54.9
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 7.1e-30 134.0 111 51.4
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 7.1e-30 134.0 113 54.9
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 1.6e-29 132.9 113 54.9
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 1.6e-29 132.9 113 54.9
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 2.1e-29 132.5 112 51.8
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.7e-29 132.1 113 54.0
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 4.6e-29 131.3 110 50.0
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 4.6e-29 131.3 110 49.1
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 7.8e-29 130.6 93 61.3
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 7.8e-29 130.6 112 51.8
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 1.0e-28 130.2 113 54.0
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.0e-28 130.2 113 54.0
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 1.3e-28 129.8 112 50.9
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 1.3e-28 129.8 115 53.9
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 3.0e-28 128.6 109 52.3
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 3.0e-28 128.6 112 54.5
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 5.1e-28 127.9 111 53.2
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 1.1e-27 126.7 110 47.3
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 1.5e-27 126.3 112 49.1
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 1.5e-27 126.3 112 49.1
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 2.5e-27 125.6 113 53.1
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 4.3e-27 124.8 115 53.0
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 7.3e-27 124.0 110 51.8
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 9.6e-27 123.6 112 51.8
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 1.2e-26 123.2 112 47.3
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 1.2e-26 123.2 112 52.7
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 6.2e-26 120.9 112 50.0
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 6.2e-26 120.9 113 53.1
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 6.2e-26 120.9 115 52.2
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 8.1e-26 120.6 97 53.6
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 8.1e-26 120.6 101 52.5
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.1e-25 120.2 112 50.9
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 1.1e-25 120.2 112 50.9
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 1.4e-25 119.8 113 53.1
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 1.8e-25 119.4 110 49.1
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.8e-25 119.4 110 49.1
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.8e-25 119.4 110 49.1
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.8e-25 119.4 110 49.1
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.8e-25 119.4 110 49.1
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.8e-25 119.4 110 49.1
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.8e-25 119.4 110 49.1
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 2.4e-25 119.0 111 48.6
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 2.4e-25 119.0 111 47.7
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 3.1e-25 118.6 112 47.3
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 4.0e-25 118.2 113 53.1
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 4.0e-25 118.2 110 48.2
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 5.2e-25 117.9 110 46.4
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 1.2e-24 116.7 112 48.2
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 1.2e-24 116.7 112 49.1
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 1.2e-24 116.7 116 46.6
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 1.2e-24 116.7 112 48.2
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 1.5e-24 116.3 110 49.1
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 5.8e-24 114.4 96 50.0
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 4.9e-23 111.3 112 47.3
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 4.9e-23 111.3 112 47.3
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 4.9e-23 111.3 112 47.3
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 4.9e-23 111.3 112 47.3
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 4.9e-23 111.3 112 47.3
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 4.9e-23 111.3 112 47.3
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 4.9e-23 111.3 112 47.3
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 4.9e-23 111.3 112 47.3
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 6.4e-23 110.9 112 47.3
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 8.4e-23 110.5 112 45.5
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 8.4e-23 110.5 113 50.4
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 1.4e-22 109.8 109 44.0
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 1.4e-22 109.8 112 47.3
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 4.2e-22 108.2 112 46.4
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 4.2e-22 108.2 115 43.5
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 5.4e-22 107.8 114 48.2
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 6.6e-20 100.9 105 50.5
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 8.7e-20 100.5 107 40.2
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 8.7e-20 100.5 95 46.3
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 8.7e-20 100.5 76 57.9
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.3e-18 96.7 73 58.9
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 4.8e-18 94.7 111 40.5
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 6.2e-18 94.4 112 46.4
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 5.3e-17 91.3 137 39.4
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 2.0e-16 89.4 88 43.2
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 3.4e-16 88.6 68 57.4
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 4.5e-16 88.2 74 50.0
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 9.9e-16 87.0 69 53.6
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 8.4e-15 84.0 128 35.9
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 1.6e-13 79.7 65 52.3
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 3.5e-13 78.6 67 52.2
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 5.1e-12 74.7 76 40.8
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 1.5e-11 73.2 70 45.7
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 2.8e-10 68.9 55 56.4
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 3.6e-10 68.6 65 49.2
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.4e-08 62.0 114 28.9
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 2.2e-07 59.3 111 30.6
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.1e-06 57.0 103 30.1
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 1.4e-06 56.6 116 36.2
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 1.4e-06 56.6 101 29.7
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.9e-06 56.2 114 30.7
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 2.4e-06 55.8 112 29.5
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 2.4e-06 55.8 101 29.7
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 2.4e-06 55.8 113 31.0
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 3.2e-06 55.5 112 29.5
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 5.5e-06 54.7 112 29.5
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 7.1e-06 54.3 101 28.7
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 7.1e-06 54.3 103 32.0
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 7.1e-06 54.3 103 29.1


User provided reference genes

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