Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 8.1e-174 613.6 303 100.0
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.0e-88 330.9 233 71.2
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 8.9e-88 327.8 227 71.4
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.0e-87 326.6 229 71.2
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 4.4e-87 325.5 278 62.6
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 2.7e-84 316.2 237 67.1
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 2.7e-84 316.2 226 69.0
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 2.7e-84 316.2 226 69.0
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 2.7e-84 316.2 258 61.6
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 1.0e-83 314.3 226 67.7
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 1.0e-83 314.3 245 65.7
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 1.7e-83 313.5 231 67.1
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 2.3e-83 313.2 226 67.7
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 3.9e-83 312.4 281 58.4
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 5.0e-83 312.0 226 66.8
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 1.9e-82 310.1 236 66.1
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 1.2e-81 307.4 237 65.8
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 2.1e-81 306.6 278 57.9
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 2.1e-81 306.6 230 65.7
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 1.1e-80 304.3 245 63.7
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 1.4e-80 303.9 278 57.6
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 1.4e-80 303.9 278 57.6
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 1.4e-80 303.9 274 56.2
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 1.4e-80 303.9 225 64.4
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 1.8e-80 303.5 278 57.6
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 3.1e-80 302.8 226 65.5
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 3.1e-80 302.8 226 65.0
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 3.1e-80 302.8 226 65.0
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 3.1e-80 302.8 283 57.2
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 3.1e-80 302.8 284 55.6
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 3.1e-80 302.8 255 60.0
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 4.0e-80 302.4 258 59.7
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 5.2e-80 302.0 277 58.1
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 6.8e-80 301.6 264 59.5
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 6.8e-80 301.6 276 56.9
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 1.2e-79 300.8 226 65.0
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 1.2e-79 300.8 227 64.8
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 1.5e-79 300.4 249 59.8
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 2.0e-79 300.1 226 64.2
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 4.4e-79 298.9 225 65.3
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 4.4e-79 298.9 226 62.4
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 7.5e-79 298.1 226 64.6
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 1.3e-78 297.4 243 62.1
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 1.7e-78 297.0 225 63.6
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 1.7e-78 297.0 226 62.4
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 2.2e-78 296.6 225 64.0
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 2.2e-78 296.6 226 65.5
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 2.9e-78 296.2 226 63.3
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 2.9e-78 296.2 226 62.4
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 2.9e-78 296.2 225 63.1
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 3.7e-78 295.8 225 64.0
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 3.7e-78 295.8 225 64.0
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 4.9e-78 295.4 225 63.1
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 4.9e-78 295.4 225 64.0
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 6.4e-78 295.0 225 63.1
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 8.3e-78 294.7 225 62.7
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 8.3e-78 294.7 226 62.8
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 8.3e-78 294.7 233 63.1
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 1.4e-77 293.9 225 64.0
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 1.9e-77 293.5 244 59.4
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 1.9e-77 293.5 227 63.9
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 3.2e-77 292.7 226 63.3
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 3.2e-77 292.7 233 62.2
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 4.1e-77 292.4 245 59.6
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 4.1e-77 292.4 225 62.2
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 5.4e-77 292.0 229 65.1
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 7.0e-77 291.6 225 62.7
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 1.6e-76 290.4 226 62.4
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 2.7e-76 289.7 225 63.6
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 2.7e-76 289.7 251 58.2
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 3.5e-76 289.3 226 62.8
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 4.6e-76 288.9 223 63.7
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 6.0e-76 288.5 292 53.1
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 6.0e-76 288.5 225 60.9
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 7.8e-76 288.1 227 63.4
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 1.0e-75 287.7 259 56.8
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 1.0e-75 287.7 224 63.8
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 1.3e-75 287.3 225 65.3
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 1.7e-75 287.0 241 58.9
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 1.7e-75 287.0 261 57.5
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 2.3e-75 286.6 253 57.3
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 3.0e-75 286.2 226 61.9
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 3.9e-75 285.8 227 63.0
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 5.0e-75 285.4 246 59.8
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 6.6e-75 285.0 227 64.3
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 6.6e-75 285.0 227 63.0
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.1e-74 284.3 220 62.3
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 2.5e-74 283.1 226 60.6
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 2.5e-74 283.1 225 60.9
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 3.3e-74 282.7 249 57.0
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 9.5e-74 281.2 266 56.0
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 2.8e-73 279.6 225 62.7
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 3.6e-73 279.3 245 58.0
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 6.2e-73 278.5 225 60.9
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 8.1e-73 278.1 225 61.3
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 1.4e-72 277.3 244 57.0
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 1.8e-72 276.9 225 62.2
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 6.8e-72 275.0 249 57.4
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 8.9e-72 274.6 225 59.1
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 8.9e-72 274.6 282 55.0
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 8.9e-72 274.6 227 59.0
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 2.6e-71 273.1 229 60.7
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 3.4e-71 272.7 282 53.5
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 4.4e-71 272.3 280 52.5
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 5.8e-71 271.9 209 63.2
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 5.8e-71 271.9 247 55.9
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 9.9e-71 271.2 275 54.2
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 1.3e-70 270.8 269 52.8
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 6.4e-70 268.5 224 58.5
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 6.4e-70 268.5 265 51.7
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.4e-69 267.3 274 53.6
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 1.9e-69 266.9 225 60.0
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 2.4e-64 250.0 270 50.7
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 3.2e-61 239.6 230 53.0
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 5.4e-61 238.8 230 52.2
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 2.5e-58 229.9 225 56.4
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 4.3e-58 229.2 244 52.0
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 5.6e-58 228.8 226 51.8
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 9.6e-58 228.0 208 53.8
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 1.6e-49 200.7 201 53.2
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 4.8e-49 199.1 164 60.4
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.4e-48 196.8 176 56.2
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 1.7e-46 190.7 194 55.7
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.3e-43 181.0 150 61.3
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 1.3e-43 181.0 196 52.0
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.0e-35 154.8 110 70.0
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.3e-35 154.5 236 36.0
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 1.3e-35 154.5 225 37.8
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 1.1e-34 151.4 231 35.5
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 4.0e-32 142.9 110 61.8
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 4.5e-31 139.4 125 59.2
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 1.3e-25 121.3 135 48.9
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 6.3e-25 119.0 188 42.6
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 5.9e-23 112.5 60 86.7
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 1.4e-21 107.8 80 66.2
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 3.0e-19 100.1 73 68.5
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 2.2e-17 94.0 72 59.7
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.0e-14 85.1 50 78.0
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 1.2e-12 78.2 49 73.5
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 1.2e-12 78.2 49 73.5
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 1.2e-12 78.2 64 62.5
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 6.1e-12 75.9 38 84.2


User provided reference genes

Program Settings