Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.2e-105 385.6 189 100.0
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.5e-104 382.1 189 98.9
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 6.0e-58 228.0 187 59.9
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.8e-58 227.6 192 57.8
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.3e-57 226.1 187 55.1
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.5e-56 222.6 192 57.3
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 2.1e-55 219.5 194 53.6
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 2.8e-55 219.2 194 52.1
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 8.1e-55 217.6 192 54.2
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 8.1e-55 217.6 194 54.6
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 8.1e-55 217.6 192 54.7
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 1.4e-54 216.9 187 49.7
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.8e-54 216.5 186 55.9
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 1.8e-54 216.5 192 51.0
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 3.1e-54 215.7 202 53.5
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 5.2e-54 214.9 186 55.4
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 8.9e-54 214.2 189 51.3
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.2e-53 213.8 186 55.4
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 2.0e-53 213.0 193 54.4
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 3.4e-53 212.2 196 51.5
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 5.8e-53 211.5 202 51.5
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 5.8e-53 211.5 208 50.0
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 9.9e-53 210.7 192 53.1
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 9.9e-53 210.7 192 53.6
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 9.9e-53 210.7 192 52.6
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 9.9e-53 210.7 193 52.3
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 1.7e-52 209.9 193 53.4
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 2.2e-52 209.5 192 53.1
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 2.9e-52 209.1 202 51.5
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 2.9e-52 209.1 186 53.8
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 2.9e-52 209.1 186 53.8
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 3.7e-52 208.8 193 52.3
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 4.9e-52 208.4 186 53.8
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 6.4e-52 208.0 205 49.8
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 6.4e-52 208.0 205 49.8
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 6.4e-52 208.0 205 49.3
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 8.3e-52 207.6 192 52.6
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 8.3e-52 207.6 192 52.6
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.4e-51 206.8 193 51.8
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.9e-51 206.5 206 49.5
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.9e-51 206.5 202 51.5
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 1.9e-51 206.5 188 50.0
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 1.9e-51 206.5 192 51.6
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 2.4e-51 206.1 208 49.0
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 3.2e-51 205.7 194 50.5
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 3.2e-51 205.7 203 53.2
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 4.1e-51 205.3 202 51.0
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 4.1e-51 205.3 202 51.0
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 4.1e-51 205.3 193 50.8
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 7.1e-51 204.5 191 48.7
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 9.2e-51 204.1 206 47.6
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 1.2e-50 203.8 202 50.5
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 1.2e-50 203.8 199 53.3
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.2e-50 203.8 187 52.9
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 2.1e-50 203.0 193 52.3
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 2.1e-50 203.0 210 49.5
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 4.6e-50 201.8 201 49.8
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 4.6e-50 201.8 193 51.3
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 6.0e-50 201.4 202 49.5
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 7.8e-50 201.1 195 50.3
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 1.0e-49 200.7 198 51.0
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 2.3e-49 199.5 192 47.4
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 2.3e-49 199.5 192 49.0
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 3.0e-49 199.1 228 46.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 5.1e-49 198.4 195 48.2
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 6.6e-49 198.0 208 48.1
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 1.9e-48 196.4 189 45.5
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 2.5e-48 196.1 195 50.3
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 3.3e-48 195.7 195 47.7
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 3.3e-48 195.7 193 51.3
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.3e-48 195.3 193 51.3
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 9.5e-48 194.1 194 45.4
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 1.6e-47 193.4 196 48.0
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 2.8e-47 192.6 235 43.4
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 2.8e-47 192.6 183 53.6
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 2.8e-47 192.6 196 50.0
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 3.6e-47 192.2 177 53.7
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 3.6e-47 192.2 205 47.8
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 4.7e-47 191.8 194 45.9
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 4.7e-47 191.8 194 45.9
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 4.7e-47 191.8 194 45.9
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 1.4e-46 190.3 193 46.6
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.8e-46 189.9 196 46.4
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 1.8e-46 189.9 221 45.7
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 1.8e-46 189.9 192 49.0
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 6.8e-46 188.0 179 51.4
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 8.9e-46 187.6 189 50.3
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 1.5e-45 186.8 190 50.0
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 2.6e-45 186.0 236 44.5
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 3.4e-45 185.7 199 44.7
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.4e-45 185.3 212 46.7
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 7.6e-45 184.5 194 45.9
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.3e-44 183.7 226 43.8
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.3e-44 183.7 226 43.8
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.3e-44 183.7 177 52.5
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 4.9e-44 181.8 185 51.4
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 1.9e-43 179.9 176 50.0
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 3.2e-43 179.1 181 49.7
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 1.6e-42 176.8 192 44.8
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 7.8e-42 174.5 223 40.4
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 1.0e-41 174.1 261 38.3
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.3e-41 173.7 186 46.2
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 1.3e-41 173.7 172 52.3
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.0e-41 172.6 177 50.8
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 6.6e-41 171.4 193 44.0
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 1.5e-40 170.2 199 40.7
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 3.6e-39 165.6 202 38.1
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 6.9e-38 161.4 158 50.6
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 2.9e-36 156.0 157 51.0
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 4.2e-35 152.1 189 45.5
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 3.5e-34 149.1 192 41.7
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 1.1e-32 144.1 119 63.0
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 6.2e-31 138.3 199 40.2
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 1.2e-29 134.0 116 58.6
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 6.4e-28 128.3 111 55.0
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 1.4e-27 127.1 110 57.3
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 7.1e-27 124.8 98 62.2
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 7.1e-27 124.8 121 43.0
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 9.3e-27 124.4 105 58.1
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 1.2e-26 124.0 96 61.5
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.8e-25 120.2 138 45.7
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 4.3e-24 115.5 98 57.1
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 9.6e-24 114.4 97 51.5
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.3e-23 114.0 101 58.4
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 2.8e-23 112.8 130 40.8
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.2e-20 103.2 98 57.1
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-18 97.1 109 51.4
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 2.7e-18 96.3 114 42.1
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-17 94.0 79 62.0
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 1.9e-16 90.1 68 66.2
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 2.5e-16 89.7 72 58.3
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 2.1e-15 86.7 94 40.4
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 2.4e-14 83.2 64 54.7
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.2e-13 80.9 64 59.4
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 3.4e-13 79.3 100 42.0
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 1.7e-12 77.0 61 47.5
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 7.1e-11 71.6 111 35.1
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 1.0e-09 67.8 67 41.8
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 5.1e-09 65.5 61 42.6
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 6.7e-09 65.1 97 36.1
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.7e-09 65.1 62 43.5
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 1.1e-08 64.3 46 54.3
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.5e-08 63.9 75 45.3
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 6.3e-07 58.5 105 34.3
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.1e-06 56.2 46 47.8
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 4.1e-06 55.8 41 53.7
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.3e-06 55.5 37 70.3
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 9.0e-06 54.7 41 51.2


User provided reference genes

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