Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014766 Vanilla planifolia HOM05D004102 ORTHO05D005307 1.5e-90 336.3 179 100.0
Zm00001eb038490 Zea mays HOM05D004102 ORTHO05D005307 2.5e-45 186.0 196 60.7
TAR362G0337 Trochodendron aralioides HOM05D004102 ORTHO05D005307 4.2e-45 185.3 196 59.7
Dinv34632 Davidia involucrata HOM05D004102 ORTHO05D005307 7.2e-45 184.5 196 59.7
MBI07_g16928_MAGBIO Magnolia biondii HOM05D004102 ORTHO05D005307 1.2e-44 183.7 196 59.7
Duzib133G0778 Durio zibethinus HOM05D004102 ORTHO05D005307 2.1e-44 183.0 196 59.7
CDE03G0492 Ceratophyllum demersum HOM05D004102 ORTHO05D005307 3.6e-44 182.2 196 58.2
Thecc.01G257700 Theobroma cacao HOM05D004102 ORTHO05D005307 3.6e-44 182.2 196 59.2
Duzib138G0514 Durio zibethinus HOM05D004102 ORTHO05D005307 6.1e-44 181.4 196 59.2
CSS0001085 Camellia sinensis var. sinensis HOM05D004102 ORTHO05D005307 1.0e-43 180.6 196 58.7
CiPaw.03G264900 Carya illinoinensis HOM05D004102 ORTHO05D005307 1.4e-43 180.3 196 58.7
Lj1A67T41 Lonicera japonica HOM05D004102 ORTHO05D005307 3.9e-43 178.7 196 58.2
Prupe.8G222900 Prunus persica HOM05D004102 ORTHO05D005307 5.1e-43 178.3 196 59.7
Actinidia07299 Actinidia chinensis HOM05D004102 ORTHO05D005307 6.7e-43 177.9 193 60.6
Ciclev10024065m.g Citrus clementina HOM05D004102 ORTHO05D005307 6.7e-43 177.9 196 56.6
MD05G1196500 Malus domestica HOM05D004102 ORTHO05D005307 6.7e-43 177.9 196 57.1
Manes.12G032800 Manihot esculenta HOM05D004102 ORTHO05D005307 8.8e-43 177.6 196 58.2
Rhsim13G0035400 Rhododendron simsii HOM05D004102 ORTHO05D005307 1.5e-42 176.8 196 57.1
vmacro02666 Vaccinium macrocarpon HOM05D004102 ORTHO05D005307 1.5e-42 176.8 193 57.5
Eucgr.B01550 Eucalyptus grandis HOM05D004102 ORTHO05D005307 2.0e-42 176.4 193 57.5
Hma1.2p1_0273F.1_g109650 Hydrangea macrophylla HOM05D004102 ORTHO05D005307 2.0e-42 176.4 196 60.2
MD10G1183700 Malus domestica HOM05D004102 ORTHO05D005307 2.0e-42 176.4 196 58.2
DCAR_005687 Daucus carota HOM05D004102 ORTHO05D005307 2.5e-42 176.0 196 57.7
Os12g0641500 Oryza sativa ssp. japonica HOM05D004102 ORTHO05D005307 2.5e-42 176.0 196 57.7
Gohir.A07G213200 Gossypium hirsutum HOM05D004102 ORTHO05D005307 9.7e-42 174.1 196 57.1
Gohir.D07G219350 Gossypium hirsutum HOM05D004102 ORTHO05D005307 9.7e-42 174.1 196 57.1
Gorai.001G253800 Gossypium raimondii HOM05D004102 ORTHO05D005307 9.7e-42 174.1 196 57.1
Cfa002432 Carpinus fangiana HOM05D004102 ORTHO05D005307 1.3e-41 173.7 196 57.7
COL.COLO4_03878 Corchorus olitorius HOM05D004102 ORTHO05D005307 2.2e-41 172.9 196 55.1
COL.COLO4_04038 Corchorus olitorius HOM05D004102 ORTHO05D005307 2.2e-41 172.9 196 55.1
PSO832G3143 Papaver somniferum HOM05D004102 ORTHO05D005307 2.2e-41 172.9 196 56.1
SHI09769 Sapria himalayana HOM05D004102 ORTHO05D005307 2.2e-41 172.9 196 56.6
PSO210G1261 Papaver somniferum HOM05D004102 ORTHO05D005307 2.8e-41 172.6 196 56.1
Sed0028046 Sechium edule HOM05D004102 ORTHO05D005307 2.8e-41 172.6 196 59.2
AUR62011867 Chenopodium quinoa HOM05D004102 ORTHO05D005307 4.8e-41 171.8 193 57.5
Haze_24635 Corylus avellana HOM05D004102 ORTHO05D005307 6.3e-41 171.4 221 54.8
CANSAT01G2283 Cannabis sativa HOM05D004102 ORTHO05D005307 8.2e-41 171.0 196 56.1
QL09p038899 Quercus lobata HOM05D004102 ORTHO05D005307 8.2e-41 171.0 196 56.1
Aqoxy5G00225 Aquilegia oxysepala HOM05D004102 ORTHO05D005307 1.1e-40 170.6 196 55.6
Sc17g0000640 Simmondsia chinensis HOM05D004102 ORTHO05D005307 1.1e-40 170.6 197 56.9
EL10As5g23471 Beta vulgaris HOM05D004102 ORTHO05D005307 1.4e-40 170.2 196 56.6
Sabra05G0173500 Salix brachista HOM05D004102 ORTHO05D005307 1.8e-40 169.9 196 56.1
Atru.chr5.1694 Acer truncatum HOM05D004102 ORTHO05D005307 2.4e-40 169.5 196 56.6
Potri.005G224900 Populus trichocarpa HOM05D004102 ORTHO05D005307 2.4e-40 169.5 196 57.1
AUR62024710 Chenopodium quinoa HOM05D004102 ORTHO05D005307 6.9e-40 167.9 193 56.5
SEGI_02214 Sequoiadendron giganteum HOM05D004102 ORTHO05D005307 1.2e-39 167.2 199 56.3
TWI18G1245 Tripterygium wilfordii HOM05D004102 ORTHO05D005307 2.6e-39 166.0 196 57.1
AagrBONN_evm.TU.Sc2ySwM_344.1414__1415 Anthoceros agrestis HOM05D004102 ORTHO05D005307 4.5e-39 165.2 196 55.1
MELO3C012730.2 Cucumis melo HOM05D004102 ORTHO05D005307 4.5e-39 165.2 196 56.6
CsaV3_7G026800 Cucumis sativus L. HOM05D004102 ORTHO05D005307 4.5e-39 165.2 196 56.6
Ah.11g049770 Amaranthus hybridus HOM05D004102 ORTHO05D005307 7.7e-39 164.5 193 55.4
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 1.0e-38 164.1 196 55.6
SMO357G0017 Selaginella moellendorffii HOM05D004102 ORTHO05D005307 1.3e-38 163.7 198 53.0
RcHm_v2.0_Chr6g0287971 Rosa chinensis HOM05D004102 ORTHO05D005307 2.2e-38 162.9 196 54.1
ATR0827G015 Amborella trichopoda HOM05D004102 ORTHO05D005307 3.8e-38 162.2 193 54.9
TPR.G23973 Trifolium pratense HOM05D004102 ORTHO05D005307 1.9e-37 159.8 195 53.8
Lalb_Chr06g0170471 Lupinus albus HOM05D004102 ORTHO05D005307 2.5e-37 159.5 193 54.9
Mapoly0107s0024 Marchantia polymorpha HOM05D004102 ORTHO05D005307 7.2e-37 157.9 196 52.6
FAN20G2335 Fragaria x ananassa HOM05D004102 ORTHO05D005307 9.4e-37 157.5 196 54.1
FAN27G0190 Fragaria x ananassa HOM05D004102 ORTHO05D005307 9.4e-37 157.5 196 54.1
HPP92_028092 Vanilla planifolia HOM05D004102 ORTHO05D005307 9.4e-37 157.5 178 56.2
FvH4_2g21371 Fragaria vesca HOM05D004102 ORTHO05D005307 1.2e-36 157.1 196 54.1
FAN24G0573 Fragaria x ananassa HOM05D004102 ORTHO05D005307 1.2e-36 157.1 196 54.1
Lsat_1_v5_gn_4_2320 Lactuca sativa HOM05D004102 ORTHO05D005307 1.6e-36 156.8 194 53.1
Lsat_1_v5_gn_8_92740 Lactuca sativa HOM05D004102 ORTHO05D005307 2.1e-36 156.4 196 51.5
Pp3c12_10030 Physcomitrium patens HOM05D004102 ORTHO05D005307 2.7e-36 156.0 193 50.8
QL09p039011 Quercus lobata HOM05D004102 ORTHO05D005307 2.7e-36 156.0 193 51.3
Phvul.007G192600 Phaseolus vulgaris HOM05D004102 ORTHO05D005307 4.7e-36 155.2 195 51.8
Oeu025851.5 Olea europaea HOM05D004102 ORTHO05D005307 6.1e-36 154.8 196 53.6
AT3G54670 Arabidopsis thaliana HOM05D004102 ORTHO05D005307 1.4e-35 153.7 196 51.5
Aa31sc35G50 Aethionema arabicum HOM05D004102 ORTHO05D005307 1.8e-35 153.3 196 51.5
arahy.Tifrunner.gnm1.ann1.KRWI3G Arachis hypogaea HOM05D004102 ORTHO05D005307 3.0e-35 152.5 200 51.5
PGR031G2496 Punica granatum HOM05D004102 ORTHO05D005307 3.0e-35 152.5 193 53.9
Psat6g041920 Pisum sativum HOM05D004102 ORTHO05D005307 3.9e-35 152.1 195 52.3
Cc01_g18290 Coffea canephora HOM05D004102 ORTHO05D005307 8.8e-35 151.0 196 51.5
Nitab4.5_0006457g0030 Nicotiana tabacum HOM05D004102 ORTHO05D005307 1.5e-34 150.2 188 52.1
CAN.G771.28 Capsicum annuum HOM05D004102 ORTHO05D005307 2.0e-34 149.8 198 51.5
Solyc06g083870.3 Solanum lycopersicum HOM05D004102 ORTHO05D005307 2.0e-34 149.8 196 50.5
Sopen06g035270 Solanum pennellii HOM05D004102 ORTHO05D005307 2.0e-34 149.8 196 50.5
CBR_g38546 Chara braunii HOM05D004102 ORTHO05D005307 2.6e-34 149.4 194 48.5
Peaxi162Scf00013g01122 Petunia axillaris HOM05D004102 ORTHO05D005307 2.6e-34 149.4 186 52.7
Nitab4.5_0000470g0060 Nicotiana tabacum HOM05D004102 ORTHO05D005307 4.4e-34 148.7 196 50.5
Peaxi162Scf00855g00004 Petunia axillaris HOM05D004102 ORTHO05D005307 7.4e-34 147.9 196 50.5
VMungo0720G2324 Vigna mungo HOM05D004102 ORTHO05D005307 2.8e-33 146.0 195 51.3
unitig_37.g12599 Utricularia gibba HOM05D001236 ORTHO05D005307 1.1e-32 144.1 216 45.8
SGA_v2.0_scaffold2G00877 Striga asiatica HOM05D004102 ORTHO05D005307 5.3e-32 141.7 195 49.7
ClCG09G008240 Citrullus lanatus HOM05D004102 ORTHO05D005307 7.0e-32 141.4 196 51.0
FAN15G3235 Fragaria x ananassa HOM05D004102 ORTHO05D005307 2.0e-31 139.8 169 54.4
MSTRG.12532 Avicennia marina HOM05D004102 ORTHO05D005307 1.3e-30 137.1 167 53.9
Migut.N02206 Erythranthe guttata HOM05D004102 ORTHO05D005307 1.7e-30 136.7 166 55.4
Medtr1g069910 Medicago truncatula HOM05D004102 ORTHO05D005307 1.9e-29 133.3 195 48.2
Carub.0005s2127 Capsella rubella HOM05D004102 ORTHO05D005307 5.5e-29 131.7 196 48.0
BcaC07g39797 Brassica carinata HOM05D004102 ORTHO05D005307 7.2e-29 131.3 160 53.8
Nn3g19665 Nelumbo nucifera HOM05D004102 ORTHO05D005307 7.2e-29 131.3 154 53.2
CARHR164590 Cardamine hirsuta HOM05D004102 ORTHO05D005307 4.7e-28 128.6 196 46.9
AL5G35750 Arabidopsis lyrata HOM05D004102 ORTHO05D005307 1.0e-27 127.5 196 46.9
Lj5g0004279 Lotus japonicus HOM05D004102 ORTHO05D005307 1.0e-27 127.5 195 47.2
C03p53990 Brassica napus HOM05D004102 ORTHO05D005307 1.1e-26 124.0 198 46.5
HanXRQChr02g0038071 Helianthus annuus HOM05D004102 ORTHO05D005307 3.3e-26 122.5 151 51.7
THA.LOC104798817 Tarenaya hassleriana HOM05D004102 ORTHO05D005307 4.4e-26 122.1 145 54.5
Medtr0003s0460 Medicago truncatula HOM05D004102 ORTHO05D005307 5.7e-26 121.7 192 46.9
Thhalv10010074m.g Eutrema salsugineum HOM05D004102 ORTHO05D005307 7.4e-26 121.3 196 45.4
Glyma.10G037300 Glycine max HOM05D004102 ORTHO05D005307 9.7e-26 120.9 195 45.1
A09p47620 Brassica napus HOM05D004102 ORTHO05D005307 1.7e-25 120.2 196 45.4
BraA09t40218Z Brassica rapa HOM05D004102 ORTHO05D005307 1.7e-25 120.2 196 45.4
MCO11G672 Micromonas commoda HOM05D004102 ORTHO05D005307 1.7e-25 120.2 192 41.1
Sp5g07780 Schrenkiella parvula HOM05D004102 ORTHO05D005307 1.7e-25 120.2 196 47.4
ECA236G1622 Erigeron canadensis HOM05D004102 ORTHO05D005307 2.8e-25 119.4 194 46.4
Glyma.13G123700 Glycine max HOM05D004102 ORTHO05D005307 3.7e-25 119.0 195 44.6
C08p29820 Brassica napus HOM05D004102 ORTHO05D005307 4.8e-25 118.6 196 46.4
BolC8t50593H Brassica oleracea HOM05D004102 ORTHO05D005307 4.8e-25 118.6 196 46.4
BraA03t13511Z Brassica rapa HOM05D004102 ORTHO05D005307 4.8e-25 118.6 200 44.5
COL.COLO4_26949 Corchorus olitorius HOM05D004102 ORTHO05D005307 6.3e-25 118.2 153 51.0
arahy.Tifrunner.gnm1.ann1.3W1S0R Arachis hypogaea HOM05D004102 ORTHO05D005307 1.2e-23 114.0 239 39.3
Migut.M01725 Erythranthe guttata HOM05D004102 ORTHO05D005307 4.5e-23 112.1 166 48.2
A03p43760 Brassica napus HOM05D004102 ORTHO05D005307 5.5e-21 105.1 198 41.9
PRCOL_00005438 Prasinoderma coloniale HOM05D004102 ORTHO05D005307 9.4e-21 104.4 191 39.3
Actinidia30163 Actinidia chinensis HOM05D004102 ORTHO05D005307 6.8e-19 98.2 63 77.8
Cpa.g.c35556 Carica papaya HOM05D004102 ORTHO05D005307 2.6e-18 96.3 63 77.8
C04p37850 Brassica napus HOM05D004102 ORTHO05D005307 1.6e-15 87.0 60 75.0
TPR.G24931 Trifolium pratense HOM05D004102 ORTHO05D005307 2.7e-15 86.3 82 65.9
Cre15.g635800 Chlamydomonas reinhardtii HOM05D004102 ORTHO05D005307 1.7e-14 83.6 165 35.2
SalBow4G1077 Salvia bowleyana HOM05D004102 ORTHO05D005307 2.9e-14 82.8 61 72.1
Gohir.A07G213150 Gossypium hirsutum HOM05D004102 ORTHO05D005307 9.4e-13 77.8 151 43.7
Pp3c14_7530 Physcomitrium patens HOM05D004102 ORTHO05D000483 9.4e-13 77.8 189 37.0
Cpa.g.sc50.12 Carica papaya HOM05D004102 ORTHO05D005307 4.7e-12 75.5 82 61.0
Haze_12574 Corylus avellana HOM05D004102 ORTHO05D000687 1.0e-11 74.3 171 39.8
Pp3c14_8760 Physcomitrium patens HOM05D004102 ORTHO05D000483 6.8e-11 71.6 188 36.7
Haze_26530 Corylus avellana HOM05D004102 ORTHO05D005307 1.7e-09 67.0 176 32.4
Ca_09679_v3 Cicer arietinum L. HOM05D004102 ORTHO05D005307 5.4e-08 62.0 84 51.2
Cfa024809 Carpinus fangiana HOM05D004102 ORTHO05D005307 1.0e-06 57.8 215 29.3


User provided reference genes

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