Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014765 Vanilla planifolia HOM05D004102 ORTHO05D005307 1.7e-82 309.7 205 100.0
ATR0827G015 Amborella trichopoda HOM05D004102 ORTHO05D005307 2.9e-34 149.4 193 59.6
Os12g0641500 Oryza sativa ssp. japonica HOM05D004102 ORTHO05D005307 4.4e-30 135.6 193 60.1
CsaV3_7G026800 Cucumis sativus L. HOM05D004102 ORTHO05D005307 5.7e-30 135.2 168 57.1
ClCG09G008240 Citrullus lanatus HOM05D004102 ORTHO05D005307 2.2e-29 133.3 155 52.9
MELO3C012730.2 Cucumis melo HOM05D004102 ORTHO05D005307 1.8e-28 130.2 168 54.8
TWI18G1245 Tripterygium wilfordii HOM05D004102 ORTHO05D005307 4.1e-28 129.0 189 42.9
SHI09769 Sapria himalayana HOM05D004102 ORTHO05D005307 7.0e-28 128.3 186 45.7
PSO832G3143 Papaver somniferum HOM05D004102 ORTHO05D005307 7.7e-27 124.8 177 63.3
Sed0028046 Sechium edule HOM05D004102 ORTHO05D005307 7.7e-27 124.8 176 44.9
AagrBONN_evm.TU.Sc2ySwM_344.1414__1415 Anthoceros agrestis HOM05D004102 ORTHO05D005307 5.0e-26 122.1 199 48.7
Aqoxy5G00225 Aquilegia oxysepala HOM05D004102 ORTHO05D005307 2.5e-25 119.8 188 54.8
MBI07_g16928_MAGBIO Magnolia biondii HOM05D004102 ORTHO05D005307 3.2e-25 119.4 191 56.5
PSO210G1261 Papaver somniferum HOM05D004102 ORTHO05D005307 1.2e-24 117.5 177 58.2
DCAR_005687 Daucus carota HOM05D004102 ORTHO05D005307 1.6e-24 117.1 173 61.3
CDE03G0492 Ceratophyllum demersum HOM05D004102 ORTHO05D005307 6.8e-23 111.7 174 61.5
Oeu025851.5 Olea europaea HOM05D004102 ORTHO05D005307 8.8e-23 111.3 191 56.0
Nn3g19665 Nelumbo nucifera HOM05D004102 ORTHO05D005307 3.4e-22 109.4 223 47.5
Migut.N02206 Erythranthe guttata HOM05D004102 ORTHO05D005307 1.4e-20 104.0 169 49.1
Duzib138G0514 Durio zibethinus HOM05D004102 ORTHO05D005307 3.1e-20 102.8 95 62.1
Thecc.01G257700 Theobroma cacao HOM05D004102 ORTHO05D005307 9.1e-20 101.3 84 67.9
Lj1A67T41 Lonicera japonica HOM05D004102 ORTHO05D005307 1.2e-19 100.9 202 42.1
Actinidia07299 Actinidia chinensis HOM05D004102 ORTHO05D005307 3.5e-19 99.4 94 59.6
Medtr1g058610 Medicago truncatula HOM05D004102 ORTHO05D005307 7.7e-19 98.2 151 42.4
Aqoxy7G01887 Aquilegia oxysepala HOM05D004102 ORTHO05D005307 1.0e-18 97.8 203 35.5
CANSAT01G2283 Cannabis sativa HOM05D004102 ORTHO05D005307 2.3e-18 96.7 90 60.0
MSTRG.12532 Avicennia marina HOM05D004102 ORTHO05D005307 3.8e-18 95.9 193 51.8
CiPaw.03G264900 Carya illinoinensis HOM05D004102 ORTHO05D005307 5.0e-18 95.5 91 59.3
PGR031G2496 Punica granatum HOM05D004102 ORTHO05D005307 5.0e-18 95.5 85 61.2
Medtr1g069910 Medicago truncatula HOM05D004102 ORTHO05D005307 1.5e-17 94.0 84 61.9
SEGI_02214 Sequoiadendron giganteum HOM05D004102 ORTHO05D005307 1.5e-17 94.0 171 56.7
Glyma.10G037300 Glycine max HOM05D004102 ORTHO05D005307 2.5e-17 93.2 93 59.1
Glyma.13G123700 Glycine max HOM05D004102 ORTHO05D005307 2.5e-17 93.2 93 59.1
TAR362G0337 Trochodendron aralioides HOM05D004102 ORTHO05D005307 2.5e-17 93.2 72 69.4
Manes.12G032800 Manihot esculenta HOM05D004102 ORTHO05D005307 3.2e-17 92.8 85 62.4
Mapoly0107s0024 Marchantia polymorpha HOM05D004102 ORTHO05D005307 3.2e-17 92.8 195 47.7
Cc01_g18290 Coffea canephora HOM05D004102 ORTHO05D005307 4.2e-17 92.4 80 65.0
COL.COLO4_03878 Corchorus olitorius HOM05D004102 ORTHO05D005307 5.5e-17 92.0 92 57.6
COL.COLO4_04038 Corchorus olitorius HOM05D004102 ORTHO05D005307 5.5e-17 92.0 92 57.6
Phvul.007G192600 Phaseolus vulgaris HOM05D004102 ORTHO05D005307 5.5e-17 92.0 193 42.0
Atru.chr5.1694 Acer truncatum HOM05D004102 ORTHO05D005307 7.2e-17 91.7 86 62.8
Cpa.g.sc50.12 Carica papaya HOM05D004102 ORTHO05D005307 1.2e-16 90.9 81 64.2
Cfa002432 Carpinus fangiana HOM05D004102 ORTHO05D005307 1.2e-16 90.9 89 57.3
Haze_24635 Corylus avellana HOM05D004102 ORTHO05D005307 1.2e-16 90.9 89 57.3
FAN20G2335 Fragaria x ananassa HOM05D004102 ORTHO05D005307 1.2e-16 90.9 94 57.4
FAN27G0190 Fragaria x ananassa HOM05D004102 ORTHO05D005307 1.2e-16 90.9 94 57.4
Ciclev10024065m.g Citrus clementina HOM05D004102 ORTHO05D005307 1.6e-16 90.5 91 56.0
Lalb_Chr06g0170471 Lupinus albus HOM05D004102 ORTHO05D005307 3.6e-16 89.4 91 54.9
arahy.Tifrunner.gnm1.ann1.3W1S0R Arachis hypogaea HOM05D004102 ORTHO05D005307 6.1e-16 88.6 85 60.0
Eucgr.B01550 Eucalyptus grandis HOM05D004102 ORTHO05D005307 6.1e-16 88.6 87 56.3
Dinv34632 Davidia involucrata HOM05D004102 ORTHO05D005307 1.0e-15 87.8 94 54.3
THA.LOC104798817 Tarenaya hassleriana HOM05D004102 ORTHO05D005307 1.0e-15 87.8 82 57.3
CSS0001085 Camellia sinensis var. sinensis HOM05D004102 ORTHO05D005307 1.4e-15 87.4 78 61.5
Nitab4.5_0000470g0060 Nicotiana tabacum HOM05D004102 ORTHO05D005307 1.4e-15 87.4 188 42.6
unitig_37.g12599 Utricularia gibba HOM05D001236 ORTHO05D005307 1.4e-15 87.4 94 54.3
Ah.11g049770 Amaranthus hybridus HOM05D004102 ORTHO05D005307 1.8e-15 87.0 87 55.2
Aa31sc35G50 Aethionema arabicum HOM05D004102 ORTHO05D005307 2.3e-15 86.7 82 57.3
SGA_v2.0_scaffold2G00877 Striga asiatica HOM05D004102 ORTHO05D005307 2.3e-15 86.7 191 48.2
VMungo0720G2324 Vigna mungo HOM05D004102 ORTHO05D005307 5.2e-15 85.5 184 41.3
Thhalv10010074m.g Eutrema salsugineum HOM05D004102 ORTHO05D005307 6.8e-15 85.1 82 56.1
Sp5g07780 Schrenkiella parvula HOM05D004102 ORTHO05D005307 6.8e-15 85.1 79 57.0
Nitab4.5_0006457g0030 Nicotiana tabacum HOM05D004102 ORTHO05D005307 8.8e-15 84.7 187 42.2
Gohir.D07G219350 Gossypium hirsutum HOM05D004102 ORTHO05D005307 2.0e-14 83.6 71 64.8
Gorai.001G253800 Gossypium raimondii HOM05D004102 ORTHO05D005307 2.0e-14 83.6 71 64.8
HPP92_028093 Vanilla planifolia HOM05D004102 ORTHO05D005307 2.0e-14 83.6 42 100.0
Potri.005G224900 Populus trichocarpa HOM05D004102 ORTHO05D005307 3.4e-14 82.8 77 62.3
Zm00001eb038490 Zea mays HOM05D004102 ORTHO05D005307 3.4e-14 82.8 173 41.6
A09p47620 Brassica napus HOM05D004102 ORTHO05D005307 4.4e-14 82.4 75 57.3
C08p29820 Brassica napus HOM05D004102 ORTHO05D005307 4.4e-14 82.4 75 57.3
BolC8t50593H Brassica oleracea HOM05D004102 ORTHO05D005307 4.4e-14 82.4 75 57.3
BraA09t40218Z Brassica rapa HOM05D004102 ORTHO05D005307 4.4e-14 82.4 75 57.3
Duzib133G0778 Durio zibethinus HOM05D004102 ORTHO05D005307 4.4e-14 82.4 68 69.1
Lj2g0002321 Lotus japonicus HOM05D004102 ORTHO05D005307 4.4e-14 82.4 83 56.6
Lj5g0004279 Lotus japonicus HOM05D004102 ORTHO05D005307 4.4e-14 82.4 84 56.0
FvH4_2g21371 Fragaria vesca HOM05D004102 ORTHO05D005307 7.5e-14 81.6 70 64.3
FAN24G0573 Fragaria x ananassa HOM05D004102 ORTHO05D005307 7.5e-14 81.6 70 64.3
EL10As5g23471 Beta vulgaris HOM05D004102 ORTHO05D005307 1.7e-13 80.5 84 53.6
MD05G1196500 Malus domestica HOM05D004102 ORTHO05D005307 3.7e-13 79.3 68 64.7
RcHm_v2.0_Chr6g0287971 Rosa chinensis HOM05D004102 ORTHO05D005307 3.7e-13 79.3 68 64.7
C04p37830 Brassica napus HOM05D004102 ORTHO05D005307 4.9e-13 79.0 64 64.1
BolC4t25359H Brassica oleracea HOM05D004102 ORTHO05D005307 4.9e-13 79.0 64 64.1
arahy.Tifrunner.gnm1.ann1.KRWI3G Arachis hypogaea HOM05D004102 ORTHO05D005307 6.3e-13 78.6 85 52.9
Ca_09679_v3 Cicer arietinum L. HOM05D004102 ORTHO05D005307 6.3e-13 78.6 194 41.2
MD10G1183700 Malus domestica HOM05D004102 ORTHO05D005307 8.3e-13 78.2 64 67.2
C03p53990 Brassica napus HOM05D004102 ORTHO05D005307 1.1e-12 77.8 73 56.2
vmacro02666 Vaccinium macrocarpon HOM05D004102 ORTHO05D005307 1.1e-12 77.8 128 40.6
CARHR164590 Cardamine hirsuta HOM05D004102 ORTHO05D005307 2.4e-12 76.6 82 51.2
FAN15G3235 Fragaria x ananassa HOM05D004102 ORTHO05D005307 2.4e-12 76.6 67 62.7
A03p43760 Brassica napus HOM05D004102 ORTHO05D005307 7.0e-12 75.1 68 57.4
BraA03t13511Z Brassica rapa HOM05D004102 ORTHO05D005307 7.0e-12 75.1 68 57.4
AL5G35750 Arabidopsis lyrata HOM05D004102 ORTHO05D005307 9.2e-12 74.7 73 53.4
CAN.G771.28 Capsicum annuum HOM05D004102 ORTHO05D005307 9.2e-12 74.7 62 67.7
HanXRQChr02g0038071 Helianthus annuus HOM05D004102 ORTHO05D005307 1.2e-11 74.3 118 67.8
Prupe.8G222900 Prunus persica HOM05D004102 ORTHO05D005307 1.6e-11 73.9 60 70.0
Sabra05G0173500 Salix brachista HOM05D004102 ORTHO05D005307 1.6e-11 73.9 252 41.7
Solyc06g083870.3 Solanum lycopersicum HOM05D004102 ORTHO05D005307 2.7e-11 73.2 60 66.7
Sopen06g035270 Solanum pennellii HOM05D004102 ORTHO05D005307 2.7e-11 73.2 60 66.7
Carub.0005s2127 Capsella rubella HOM05D004102 ORTHO05D005307 5.9e-11 72.0 68 58.8
TPR.G23973 Trifolium pratense HOM05D004102 ORTHO05D005307 7.8e-11 71.6 70 57.1
TPR.G24931 Trifolium pratense HOM05D004102 ORTHO05D005307 7.8e-11 71.6 176 34.1
Hma1.2p1_0273F.1_g109650 Hydrangea macrophylla HOM05D004102 ORTHO05D005307 1.0e-10 71.2 58 69.0
AT3G54670 Arabidopsis thaliana HOM05D004102 ORTHO05D005307 1.3e-10 70.9 68 54.4
AUR62011867 Chenopodium quinoa HOM05D004102 ORTHO05D005307 2.3e-10 70.1 71 57.7
ECA236G1622 Erigeron canadensis HOM05D004102 ORTHO05D005307 3.8e-10 69.3 67 59.7
AUR62024710 Chenopodium quinoa HOM05D004102 ORTHO05D005307 5.0e-10 68.9 71 57.7
Psat6g041920 Pisum sativum HOM05D004102 ORTHO05D005307 5.0e-10 68.9 58 63.8
Lsat_1_v5_gn_8_92740 Lactuca sativa HOM05D004102 ORTHO05D005307 1.1e-09 67.8 66 56.1
Sc17g0000640 Simmondsia chinensis HOM05D004102 ORTHO05D005307 1.5e-09 67.4 161 49.1
Pp3c12_10030 Physcomitrium patens HOM05D004102 ORTHO05D005307 1.9e-09 67.0 162 37.0
QL09p038899 Quercus lobata HOM05D004102 ORTHO05D005307 2.5e-09 66.6 66 56.1
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 3.3e-09 66.2 64 56.2
Haze_12574 Corylus avellana HOM05D004102 ORTHO05D000687 1.6e-08 63.9 53 67.9
Peaxi162Scf00013g01122 Petunia axillaris HOM05D004102 ORTHO05D005307 3.6e-08 62.8 65 52.3
Peaxi162Scf00855g00004 Petunia axillaris HOM05D004102 ORTHO05D005307 6.1e-08 62.0 164 50.0
Rhsim13G0035400 Rhododendron simsii HOM05D004102 ORTHO05D005307 5.2e-07 58.9 150 31.3
Lsat_1_v5_gn_4_2320 Lactuca sativa HOM05D004102 ORTHO05D005307 6.8e-07 58.5 51 60.8
Gohir.A07G213200 Gossypium hirsutum HOM05D004102 ORTHO05D005307 2.6e-06 56.6 45 68.9
CAN.G53.6 Capsicum annuum HOM05D004102 ORTHO05D028485 3.4e-06 56.2 63 58.7


User provided reference genes

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