Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 2.7e-88 328.6 156 100.0
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.4e-75 285.0 156 80.8
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 7.6e-75 283.9 154 81.8
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 9.9e-75 283.5 156 82.1
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.7e-74 282.7 156 80.1
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 3.8e-74 281.6 156 79.5
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 4.9e-74 281.2 156 80.1
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 4.9e-74 281.2 156 81.4
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 6.4e-74 280.8 156 80.1
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 6.4e-74 280.8 156 80.8
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 6.4e-74 280.8 155 81.3
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 6.4e-74 280.8 155 81.3
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 8.4e-74 280.4 155 80.0
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 8.4e-74 280.4 155 80.6
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 1.1e-73 280.0 156 80.1
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.1e-73 280.0 156 80.1
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 1.1e-73 280.0 156 80.1
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.4e-73 279.6 155 80.6
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.4e-73 279.6 156 80.1
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.9e-73 279.3 156 79.5
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 1.9e-73 279.3 156 79.5
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.2e-73 278.5 156 78.8
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 4.1e-73 278.1 156 77.6
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 4.1e-73 278.1 156 79.5
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 4.1e-73 278.1 156 79.5
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 4.1e-73 278.1 156 81.4
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 5.4e-73 277.7 156 75.6
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 5.4e-73 277.7 155 79.4
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 5.4e-73 277.7 155 79.4
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 5.4e-73 277.7 156 79.5
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 7.1e-73 277.3 156 80.1
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 7.1e-73 277.3 153 79.7
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 7.1e-73 277.3 156 78.2
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 9.2e-73 276.9 156 77.6
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 9.2e-73 276.9 156 78.2
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.2e-72 276.6 156 78.8
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 2.1e-72 275.8 156 79.5
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 2.7e-72 275.4 156 80.1
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 2.7e-72 275.4 156 79.5
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 3.5e-72 275.0 156 78.2
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 3.5e-72 275.0 156 78.2
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 3.5e-72 275.0 155 78.7
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 4.6e-72 274.6 156 79.5
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 4.6e-72 274.6 156 79.5
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 4.6e-72 274.6 156 79.5
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 4.6e-72 274.6 155 79.4
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 7.8e-72 273.9 156 78.8
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.0e-71 273.5 156 76.9
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 1.0e-71 273.5 156 79.5
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 2.3e-71 272.3 156 78.8
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 3.0e-71 271.9 155 78.1
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 3.9e-71 271.6 156 77.6
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 3.9e-71 271.6 155 78.1
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 3.9e-71 271.6 157 78.3
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.1e-71 271.2 156 76.3
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 8.7e-71 270.4 157 79.0
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 1.1e-70 270.0 157 79.0
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 1.1e-70 270.0 157 79.0
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 1.1e-70 270.0 157 79.0
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 1.1e-70 270.0 157 79.0
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.1e-70 270.0 156 76.9
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.5e-70 269.6 156 76.9
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.9e-70 269.2 156 75.0
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.9e-70 269.2 156 76.3
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 2.5e-70 268.9 157 78.3
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 2.5e-70 268.9 156 76.3
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 2.5e-70 268.9 156 76.3
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.3e-70 268.5 156 76.9
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 4.3e-70 268.1 158 79.1
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 4.3e-70 268.1 155 78.1
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 7.3e-70 267.3 156 75.6
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 9.6e-70 266.9 156 78.2
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.2e-69 266.5 156 78.2
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.6e-69 266.2 157 78.3
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 2.8e-69 265.4 147 80.3
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.6e-69 265.0 157 77.7
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.6e-69 265.0 147 80.3
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 4.7e-69 264.6 156 78.8
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 4.7e-69 264.6 156 78.8
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 6.2e-69 264.2 157 77.7
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 6.2e-69 264.2 157 77.7
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 6.2e-69 264.2 156 76.9
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 6.2e-69 264.2 156 75.6
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 8.1e-69 263.8 157 77.7
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 8.1e-69 263.8 157 77.7
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 8.1e-69 263.8 157 77.7
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 1.8e-68 262.7 157 77.1
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 2.4e-68 262.3 154 74.7
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 3.1e-68 261.9 155 78.1
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 5.2e-68 261.2 156 75.6
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.9e-68 260.8 156 75.0
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.2e-67 260.0 156 76.3
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.5e-67 259.6 155 73.5
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 3.4e-67 258.5 156 74.4
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 3.4e-67 258.5 156 74.4
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 3.4e-67 258.5 156 71.8
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 7.6e-67 257.3 157 77.1
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 9.9e-67 256.9 155 76.8
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 6.4e-66 254.2 153 73.2
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.9e-65 252.7 156 73.7
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.4e-65 252.3 157 73.9
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.6e-64 249.6 156 73.7
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.6e-64 248.1 153 69.9
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 6.0e-64 247.7 193 61.7
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 2.3e-63 245.7 155 72.3
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.2e-61 237.7 154 68.8
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 3.1e-60 235.3 153 68.6
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.1e-60 235.3 153 68.6
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.1e-60 235.3 153 68.6
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 3.1e-60 235.3 160 68.1
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 9.0e-60 233.8 136 75.7
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.2e-59 233.4 153 68.6
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.2e-59 233.4 153 68.6
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.5e-59 233.0 153 68.6
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 4.5e-59 231.5 146 69.2
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.4e-57 226.5 154 66.9
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.4e-57 226.5 154 66.9
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 9.3e-57 223.8 154 63.0
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.6e-56 223.0 154 63.0
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 6.0e-56 221.1 151 68.9
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 6.0e-56 221.1 132 75.8
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 3.0e-55 218.8 155 62.6
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 3.9e-55 218.4 125 79.2
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 5.1e-55 218.0 128 77.3
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.4e-52 209.9 128 75.0
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 5.8e-51 204.5 127 74.0
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 4.2e-49 198.4 112 79.5
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.7e-48 195.7 130 73.1
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 6.0e-48 194.5 156 61.5
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.3e-47 193.4 103 82.5
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 1.5e-46 189.9 156 54.5
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.4e-44 183.3 151 53.6
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.8e-44 183.0 151 55.6
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 2.6e-43 179.1 113 75.2
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 4.9e-42 174.9 151 51.7
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 8.7e-39 164.1 154 46.8
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 9.0e-36 154.1 83 80.7
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 1.5e-35 153.3 110 63.6
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 7.2e-33 144.4 79 82.3
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.5e-27 126.7 85 70.6
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 6.5e-26 121.3 68 76.5
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 3.0e-23 112.5 76 67.1
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 6.7e-23 111.3 72 70.8
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 1.8e-20 103.2 85 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 1.4e-17 93.6 71 59.2
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.3e-14 82.4 63 58.7


User provided reference genes

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