Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012173 Vanilla planifolia HOM05D017293 ORTHO05D019386 1.0e-134 483.4 251 100.0
HPP92_012175 Vanilla planifolia HOM05D017293 ORTHO05D019386 4.6e-66 255.4 339 50.4
HPP92_012171 Vanilla planifolia HOM05D017293 ORTHO05D019386 3.6e-50 202.6 292 46.6
HPP92_012174 Vanilla planifolia HOM05D017293 ORTHO05D019386 4.7e-50 202.2 295 48.1
HPP92_012170 Vanilla planifolia HOM05D017293 ORTHO05D019386 3.1e-46 189.5 249 50.2
HPP92_012176 Vanilla planifolia HOM05D017293 ORTHO05D019386 1.5e-43 180.6 122 79.5
HPP92_012168 Vanilla planifolia HOM05D017293 ORTHO05D019386 5.5e-35 152.1 220 48.2
HPP92_000046 Vanilla planifolia HOM05D017293 ORTHO05D019386 6.1e-26 122.1 66 87.9
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 8.3e-15 85.1 54 83.3
HPP92_012169 Vanilla planifolia HOM05D003404 ORTHO05D004052 3.5e-13 79.7 145 41.4
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 1.9e-11 73.9 54 70.4
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 4.3e-11 72.8 50 76.0
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 4.3e-11 72.8 50 76.0
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 4.3e-11 72.8 54 70.4
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 4.3e-11 72.8 54 68.5
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 5.6e-11 72.4 54 70.4
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 5.6e-11 72.4 54 68.5
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 7.3e-11 72.0 54 68.5
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 7.3e-11 72.0 54 64.8
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 7.3e-11 72.0 54 68.5
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 7.3e-11 72.0 54 68.5
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 7.3e-11 72.0 54 68.5
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 7.3e-11 72.0 54 68.5
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 9.5e-11 71.6 93 47.3
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 9.5e-11 71.6 55 72.7
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 9.5e-11 71.6 54 66.7
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 1.2e-10 71.2 54 68.5
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 1.2e-10 71.2 54 66.7
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 1.2e-10 71.2 54 66.7
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 1.2e-10 71.2 54 66.7
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 1.2e-10 71.2 50 72.0
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 1.2e-10 71.2 50 72.0
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 1.2e-10 71.2 50 70.0
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 1.2e-10 71.2 50 72.0
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 1.2e-10 71.2 50 72.0
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 1.6e-10 70.9 54 66.7
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 1.6e-10 70.9 92 46.7
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 2.1e-10 70.5 54 68.5
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 2.1e-10 70.5 54 66.7
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 2.1e-10 70.5 50 74.0
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 2.1e-10 70.5 50 74.0
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 2.1e-10 70.5 55 70.9
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 2.8e-10 70.1 54 64.8
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 2.8e-10 70.1 54 66.7
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 2.8e-10 70.1 50 74.0
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 2.8e-10 70.1 50 74.0
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 2.8e-10 70.1 50 74.0
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 3.6e-10 69.7 54 66.7
arahy.Tifrunner.gnm1.ann1.M7XV95 Arachis hypogaea HOM05D003404 ORTHO05D004052 3.6e-10 69.7 54 66.7
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 3.6e-10 69.7 54 64.8
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 3.6e-10 69.7 50 70.0
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 3.6e-10 69.7 54 64.8
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 3.6e-10 69.7 50 70.0
Oeu028474.1 Olea europaea HOM05D003404 ORTHO05D004052 3.6e-10 69.7 54 66.7
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 3.6e-10 69.7 93 47.3
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 3.6e-10 69.7 55 65.5
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 4.7e-10 69.3 54 64.8
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 4.7e-10 69.3 54 66.7
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 4.7e-10 69.3 54 66.7
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 4.7e-10 69.3 54 66.7
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 4.7e-10 69.3 54 66.7
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 4.7e-10 69.3 54 66.7
arahy.Tifrunner.gnm1.ann1.V95A4R Arachis hypogaea HOM05D003404 ORTHO05D004052 6.2e-10 68.9 48 72.9
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 6.2e-10 68.9 50 70.0
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 6.2e-10 68.9 54 64.8
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 6.2e-10 68.9 54 66.7
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 8.0e-10 68.6 54 66.7
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 1.0e-09 68.2 54 66.7
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 1.0e-09 68.2 54 68.5
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 1.4e-09 67.8 54 63.0
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 1.4e-09 67.8 54 63.0
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 1.4e-09 67.8 93 46.2
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 1.4e-09 67.8 54 63.0
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 1.8e-09 67.4 67 58.2
arahy.Tifrunner.gnm1.ann1.4Z0G7J Arachis hypogaea HOM05D003404 ORTHO05D004052 1.8e-09 67.4 50 70.0
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 1.8e-09 67.4 54 66.7
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 1.8e-09 67.4 54 64.8
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 1.8e-09 67.4 54 64.8
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 2.3e-09 67.0 93 49.5
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 2.3e-09 67.0 54 64.8
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 2.3e-09 67.0 56 64.3
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 3.1e-09 66.6 55 65.5
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 3.1e-09 66.6 93 47.3
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 3.1e-09 66.6 93 47.3
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 3.1e-09 66.6 55 65.5
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 3.1e-09 66.6 50 72.0
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 3.1e-09 66.6 50 72.0
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 3.1e-09 66.6 54 64.8
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 4.0e-09 66.2 93 47.3
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 4.0e-09 66.2 54 70.4
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 4.0e-09 66.2 54 70.4
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 4.0e-09 66.2 50 68.0
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 4.0e-09 66.2 93 46.2
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 5.2e-09 65.9 93 48.4
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 5.2e-09 65.9 48 68.8
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 5.2e-09 65.9 48 68.8
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 5.2e-09 65.9 48 68.8
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 5.2e-09 65.9 48 68.8
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 5.2e-09 65.9 48 68.8
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 5.2e-09 65.9 48 68.8
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 5.2e-09 65.9 93 48.4
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 5.2e-09 65.9 93 48.4
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 5.2e-09 65.9 50 68.0
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 5.2e-09 65.9 93 48.4
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 5.2e-09 65.9 54 64.8
arahy.Tifrunner.gnm1.ann1.GKM8IL Arachis hypogaea HOM05D003404 ORTHO05D004052 6.8e-09 65.5 50 68.0
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 6.8e-09 65.5 101 43.6
ATR1089G109 Amborella trichopoda HOM05D003404 ORTHO05D004052 8.9e-09 65.1 50 66.0
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 8.9e-09 65.1 54 63.0
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 8.9e-09 65.1 54 68.5
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 8.9e-09 65.1 54 68.5
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 1.2e-08 64.7 93 43.0
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 1.5e-08 64.3 54 63.0
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 2.0e-08 63.9 50 66.0
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 2.0e-08 63.9 54 64.8
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 2.6e-08 63.5 93 47.3
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 5.8e-08 62.4 55 61.8
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 7.5e-08 62.0 54 66.7
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 7.5e-08 62.0 55 61.8
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 9.8e-08 61.6 55 56.4
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 1.3e-07 61.2 54 66.7
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.3e-07 61.2 54 66.7
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.3e-07 61.2 54 66.7
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 1.3e-07 61.2 93 39.8
arahy.Tifrunner.gnm1.ann1.HGQ6MN Arachis hypogaea HOM05D003404 ORTHO05D004052 1.7e-07 60.8 45 71.1
arahy.Tifrunner.gnm1.ann1.R2063T Arachis hypogaea HOM05D003404 ORTHO05D004052 1.1e-06 58.2 45 71.1
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 4.1e-06 56.2 50 60.0
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 5.4e-06 55.8 55 60.0


User provided reference genes

Program Settings