Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.3e-270 934.5 481 100.0
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.0e-187 659.4 427 77.5
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.6e-182 642.5 415 77.6
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 2.9e-181 639.0 415 77.1
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 3.7e-181 638.6 415 78.1
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 6.4e-181 637.9 415 76.9
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.1e-180 637.1 415 76.6
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.6e-179 633.3 415 75.9
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 7.8e-179 630.9 415 76.1
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.0e-178 630.6 415 76.1
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.0e-178 630.6 415 76.4
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.0e-178 629.0 415 75.7
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 6.6e-178 627.9 414 75.6
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 6.6e-178 627.9 415 75.7
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 8.6e-178 627.5 415 76.1
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-177 627.1 415 75.4
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.1e-177 627.1 415 75.7
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.1e-177 627.1 446 72.4
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 4.3e-177 625.2 415 75.4
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 7.3e-177 624.4 415 75.7
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 7.3e-177 624.4 414 75.8
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 1.2e-176 623.6 414 75.1
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.2e-176 623.6 415 76.1
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 2.8e-176 622.5 414 75.6
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.8e-176 622.5 413 75.5
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 6.2e-176 621.3 415 74.5
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.8e-175 619.8 415 75.2
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 2.3e-175 619.4 414 72.2
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 5.2e-175 618.2 415 75.2
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 6.8e-175 617.8 414 74.9
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 8.9e-175 617.5 410 75.9
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 8.9e-175 617.5 415 74.5
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.2e-174 617.1 410 75.9
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 2.0e-174 616.3 417 75.1
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 3.4e-174 615.5 417 74.8
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 4.4e-174 615.1 415 74.7
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 4.4e-174 615.1 415 74.7
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 7.5e-174 614.4 412 74.8
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 9.8e-174 614.0 418 74.2
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.7e-173 613.2 410 74.4
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.7e-173 613.2 415 74.0
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 2.2e-173 612.8 417 75.1
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 3.7e-173 612.1 415 74.0
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 3.7e-173 612.1 415 74.2
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-172 610.1 415 73.5
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.4e-172 610.1 415 73.7
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.9e-172 609.8 415 73.3
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 2.4e-172 609.4 415 73.7
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 3.2e-172 609.0 415 73.0
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 4.1e-172 608.6 416 74.3
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 1.2e-171 607.1 414 73.9
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.6e-171 606.7 416 73.3
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.7e-171 605.9 415 73.0
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 3.5e-171 605.5 416 73.1
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 4.6e-171 605.1 414 73.4
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.0e-171 604.7 415 72.8
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 7.8e-171 604.4 412 72.6
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 7.8e-171 604.4 418 73.0
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-170 603.6 415 72.8
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.3e-170 603.6 410 73.4
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 2.3e-170 602.8 415 72.5
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 3.9e-170 602.1 414 73.2
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 6.6e-170 601.3 412 74.5
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 4.3e-169 598.6 421 72.2
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 3.6e-168 595.5 414 72.7
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 6.2e-168 594.7 415 73.3
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 8.1e-168 594.3 415 73.5
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.1e-168 594.3 415 73.3
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.1e-167 594.0 421 71.5
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 2.3e-167 592.8 415 72.5
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 3.1e-167 592.4 415 73.0
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 5.2e-167 591.7 415 71.8
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 5.2e-167 591.7 415 72.3
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 5.2e-167 591.7 415 72.5
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 8.9e-167 590.9 415 72.0
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 8.9e-167 590.9 415 72.0
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 8.9e-167 590.9 411 72.3
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.5e-166 590.1 415 73.0
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 4.4e-166 588.6 415 72.5
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 4.4e-166 588.6 415 71.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 5.8e-166 588.2 430 69.8
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 7.5e-166 587.8 439 68.1
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 7.5e-166 587.8 416 71.6
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 4.9e-165 585.1 411 72.3
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 3.2e-164 582.4 415 72.5
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 6.0e-163 578.2 427 70.3
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 6.0e-163 578.2 427 70.3
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.0e-162 577.4 427 70.0
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.7e-160 568.5 415 71.1
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 6.2e-160 568.2 311 93.2
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 5.4e-156 555.1 411 68.1
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.6e-155 553.5 376 73.9
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.5e-155 552.4 372 74.7
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 3.6e-152 542.3 408 67.9
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 9.0e-151 537.7 417 67.1
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 2.0e-150 536.6 411 68.9
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 4.4e-150 535.4 372 73.1
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 2.7e-147 526.2 417 61.9
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 2.7e-147 526.2 399 64.2
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 6.0e-147 525.0 415 65.8
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 4.3e-145 518.8 325 78.8
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 7.6e-142 508.1 413 63.9
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 8.4e-141 504.6 406 59.4
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 2.3e-138 496.5 412 62.6
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 3.7e-136 489.2 486 56.6
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 9.0e-135 484.6 419 61.6
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.5e-123 446.0 290 76.2
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.1e-123 445.3 290 76.2
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 2.2e-120 436.8 297 73.4
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 3.4e-118 429.5 306 69.6
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 7.2e-116 421.8 257 80.9
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.8e-114 417.2 256 78.5
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.3e-109 401.0 314 65.0
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 1.5e-100 370.9 411 48.4
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 2.5e-92 343.6 314 59.6
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.7e-91 340.1 292 63.7
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-84 317.8 270 61.9
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.4e-79 301.2 192 77.1
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.9e-72 276.2 238 60.5
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 2.3e-69 267.3 199 66.8
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 9.5e-68 261.9 396 37.1
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-66 257.7 199 64.8
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 4.0e-66 256.5 173 74.6
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 3.2e-63 246.9 185 67.0
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.3e-58 230.7 204 59.8
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 5.8e-57 226.1 409 34.0
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 8.3e-56 222.2 317 38.2
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.0e-53 215.3 141 75.2
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 3.1e-50 203.8 221 50.7
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.6e-44 183.0 126 71.4
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-41 174.9 200 53.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 3.4e-41 173.7 119 66.4
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 2.5e-36 157.5 102 70.6
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.6e-35 154.8 162 54.9
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.1e-35 152.5 171 51.5
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.6e-33 147.5 105 67.6
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 2.4e-31 141.0 415 28.2
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 9.3e-31 139.0 80 82.5
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 3.5e-30 137.1 83 75.9
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 6.6e-29 132.9 115 61.7
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 3.4e-25 120.6 115 58.3
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 7.6e-17 92.8 99 53.5
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.2e-15 87.4 51 80.4
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 9.3e-15 85.9 130 43.8
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.8e-13 81.6 151 35.1
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 2.3e-13 81.3 161 36.6
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.3e-12 77.0 50 76.0
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 7.4e-12 76.3 54 72.2
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 2.1e-11 74.7 169 36.1
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.2e-08 64.7 103 40.8
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 2.9e-08 64.3 38 81.6
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-07 62.4 83 43.4
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.5e-07 60.1 70 52.9


User provided reference genes

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