Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 5.1e-201 704.1 342 100.0
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.2e-133 480.3 336 67.0
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.2e-133 480.3 341 68.0
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.6e-133 479.9 337 67.7
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 3.5e-133 478.8 329 68.1
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 1.3e-132 476.9 340 66.5
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 8.6e-132 474.2 308 72.4
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.5e-131 473.4 341 67.4
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.9e-131 473.0 330 68.8
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 1.9e-131 473.0 330 67.9
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 2.5e-131 472.6 334 67.4
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 2.5e-131 472.6 341 66.3
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.5e-131 472.6 343 66.2
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 3.3e-131 472.2 333 66.7
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 3.3e-131 472.2 310 69.7
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 4.3e-131 471.9 325 66.5
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 5.6e-131 471.5 330 68.2
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 5.6e-131 471.5 343 66.2
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 7.3e-131 471.1 344 65.1
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 7.3e-131 471.1 308 70.5
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 9.6e-131 470.7 310 70.3
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.6e-130 469.9 341 65.4
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 1.6e-130 469.9 332 67.2
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 2.8e-130 469.2 342 66.1
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.8e-130 469.2 308 70.8
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 4.7e-130 468.4 343 65.6
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 4.7e-130 468.4 322 68.6
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 4.7e-130 468.4 344 67.2
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 4.7e-130 468.4 335 67.2
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.7e-130 468.4 308 70.1
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.7e-130 468.4 308 70.1
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 4.7e-130 468.4 308 69.2
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 6.2e-130 468.0 308 69.5
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 6.2e-130 468.0 327 68.5
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 6.2e-130 468.0 338 66.6
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 6.2e-130 468.0 344 65.1
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 6.2e-130 468.0 333 67.9
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 1.1e-129 467.2 333 67.0
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.4e-129 466.8 338 66.3
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.8e-129 466.5 343 66.2
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 2.4e-129 466.1 327 66.4
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 3.1e-129 465.7 326 66.6
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 4.0e-129 465.3 344 64.8
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 4.0e-129 465.3 339 65.8
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 5.2e-129 464.9 343 65.6
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 6.9e-129 464.5 334 65.9
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.5e-128 463.4 345 66.1
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.5e-128 463.4 308 69.5
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.5e-128 463.4 335 64.8
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.5e-128 463.4 338 66.3
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 2.0e-128 463.0 347 64.8
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 2.6e-128 462.6 331 65.9
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.6e-128 462.6 339 64.9
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 3.4e-128 462.2 340 66.8
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 4.4e-128 461.8 326 66.3
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 7.6e-128 461.1 331 66.2
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 7.6e-128 461.1 341 65.4
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 7.6e-128 461.1 344 64.8
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 7.6e-128 461.1 340 65.6
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 1.7e-127 459.9 344 64.2
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.7e-127 459.9 308 69.2
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.7e-127 459.9 318 65.7
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 2.2e-127 459.5 356 64.0
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 2.2e-127 459.5 342 64.6
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 2.2e-127 459.5 318 65.7
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 3.8e-127 458.8 334 63.8
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 3.8e-127 458.8 349 63.3
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 6.4e-127 458.0 344 64.0
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 8.4e-127 457.6 346 64.7
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 8.4e-127 457.6 346 64.7
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 1.1e-126 457.2 346 64.7
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 1.1e-126 457.2 346 64.7
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 1.1e-126 457.2 346 64.7
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 2.4e-126 456.1 343 63.6
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 2.4e-126 456.1 330 66.7
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.2e-125 453.8 329 65.3
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 6.0e-125 451.4 329 63.5
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.3e-124 450.3 328 65.2
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 2.3e-124 449.5 314 65.9
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.9e-123 446.4 351 61.3
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 3.3e-123 445.7 338 62.1
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 4.3e-123 445.3 307 68.4
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 2.1e-122 443.0 333 62.5
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 3.6e-122 442.2 306 68.3
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 6.2e-122 441.4 339 61.4
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 8.1e-122 441.0 331 64.4
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 8.1e-122 441.0 310 66.8
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.2e-120 437.2 331 64.0
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.2e-120 437.2 379 57.5
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.4e-120 435.6 343 63.0
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 8.4e-119 431.0 341 62.2
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 8.4e-119 431.0 339 60.5
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 8.4e-119 431.0 312 66.7
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 9.3e-118 427.6 329 60.8
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.2e-117 427.2 315 64.4
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.5e-117 425.6 329 60.8
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.0e-117 424.9 327 61.8
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 7.9e-117 424.5 328 63.1
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.0e-116 424.1 305 63.0
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.0e-116 424.1 307 63.2
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.5e-115 420.2 312 65.4
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 9.6e-115 417.5 320 62.8
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.3e-114 417.2 327 59.0
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.4e-113 413.7 343 60.3
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 9.0e-113 411.0 300 62.7
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 9.9e-112 407.5 361 56.8
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.7e-111 406.8 327 61.8
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.9e-110 403.3 319 61.4
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 5.5e-110 401.7 341 59.8
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 7.1e-110 401.4 308 62.7
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 9.3e-110 401.0 286 64.7
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 3.5e-109 399.1 307 62.9
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 3.5e-109 399.1 268 70.9
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 3.0e-108 396.0 275 66.9
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.6e-107 391.0 328 60.4
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.6e-106 390.2 264 69.7
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.1e-105 387.5 303 57.1
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 3.1e-105 386.0 312 58.7
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 5.8e-104 381.7 307 61.2
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.0e-103 380.9 284 62.0
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 3.8e-103 379.0 336 55.7
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.0e-96 356.7 245 68.6
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 1.7e-95 353.6 287 59.2
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 7.9e-93 344.7 305 53.8
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 5.7e-91 338.6 367 46.9
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 2.6e-83 313.2 225 64.9
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.6e-83 313.2 252 57.9
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.1e-81 305.8 223 58.7
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 9.1e-81 304.7 306 53.6
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 2.9e-79 299.7 243 58.8
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 2.1e-77 293.5 309 50.2
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.3e-76 290.0 228 61.8
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 2.0e-72 276.9 262 54.6
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 3.8e-63 246.1 169 68.0
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.6e-61 240.7 260 45.8
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 8.8e-60 235.0 158 71.5
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.2e-48 198.0 154 61.0
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 3.8e-47 193.0 141 61.7
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.9e-46 190.7 131 65.6
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 3.7e-42 176.4 106 76.4
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 2.1e-32 144.1 89 76.4
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.1e-25 121.7 167 46.1
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 2.3e-23 114.0 75 64.0
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 3.1e-20 103.6 64 76.6
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 1.7e-18 97.8 77 61.0
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 8.4e-18 95.5 66 66.7
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 1.9e-14 84.3 137 35.8
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 2.4e-12 77.4 200 26.0
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 4.0e-12 76.6 55 69.1
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 9.0e-12 75.5 59 55.9
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 7.6e-11 72.4 64 54.7
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 1.3e-10 71.6 208 27.9
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.3e-10 71.6 208 28.4
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 3.9e-07 60.1 47 55.3
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 1.1e-06 58.5 118 34.7
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 1.9e-06 57.8 172 25.0
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.3e-06 57.0 157 26.1
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 4.3e-06 56.6 157 24.2
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 5.6e-06 56.2 209 26.8
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 7.3e-06 55.8 155 25.8
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 9.6e-06 55.5 157 24.8
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 9.6e-06 55.5 155 24.5


User provided reference genes

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