Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 2.3e-243 845.1 424 100.0
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.4e-200 703.0 415 83.1
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 5.4e-200 701.0 397 86.1
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 1.2e-199 699.9 389 87.9
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 2.0e-199 699.1 397 86.6
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 4.6e-199 698.0 391 86.7
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 7.8e-199 697.2 380 87.9
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 2.3e-198 695.7 397 86.4
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 3.0e-198 695.3 391 86.7
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 5.0e-198 694.5 391 86.4
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.5e-197 693.0 380 87.6
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 1.5e-197 693.0 380 87.6
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 7.3e-197 690.6 397 84.6
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 7.3e-197 690.6 401 83.8
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 2.8e-196 688.7 380 87.4
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 3.6e-196 688.3 379 87.3
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 3.6e-196 688.3 380 87.1
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 4.7e-196 688.0 391 84.9
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 6.2e-196 687.6 380 87.4
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 1.4e-195 686.4 406 83.0
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 2.3e-195 685.6 409 82.9
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 2.3e-195 685.6 380 86.6
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 2.3e-195 685.6 390 86.2
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 3.1e-195 685.3 397 83.9
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 3.1e-195 685.3 397 83.9
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 3.1e-195 685.3 397 84.9
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 4.0e-195 684.9 382 87.7
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 4.0e-195 684.9 383 86.4
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 5.2e-195 684.5 380 86.8
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 6.8e-195 684.1 416 81.5
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 8.9e-195 683.7 383 86.4
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 8.9e-195 683.7 428 81.1
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 8.9e-195 683.7 424 79.5
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 8.9e-195 683.7 397 83.6
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 8.9e-195 683.7 382 86.4
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 1.2e-194 683.3 401 83.5
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 1.2e-194 683.3 381 87.9
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 1.5e-194 682.9 380 87.4
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 1.5e-194 682.9 380 87.4
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 1.5e-194 682.9 397 83.6
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 2.0e-194 682.6 399 82.7
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.0e-194 682.6 380 86.8
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 2.0e-194 682.6 418 80.1
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 2.6e-194 682.2 423 78.5
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 3.4e-194 681.8 426 79.8
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 3.4e-194 681.8 416 81.2
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 4.4e-194 681.4 416 81.2
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 4.4e-194 681.4 394 84.5
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 4.4e-194 681.4 397 84.1
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 5.8e-194 681.0 424 79.5
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 5.8e-194 681.0 418 80.9
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 7.5e-194 680.6 388 84.8
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 9.9e-194 680.2 388 84.5
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 9.9e-194 680.2 382 85.3
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 1.3e-193 679.9 378 86.8
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 1.7e-193 679.5 431 79.8
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 1.7e-193 679.5 378 86.8
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 2.9e-193 678.7 399 83.5
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 2.9e-193 678.7 397 83.1
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 3.7e-193 678.3 388 84.3
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 3.7e-193 678.3 379 87.1
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 6.4e-193 677.6 388 83.2
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 8.3e-193 677.2 384 85.4
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 8.3e-193 677.2 427 78.9
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 8.3e-193 677.2 378 86.5
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 1.4e-192 676.4 407 81.3
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 2.4e-192 675.6 425 79.1
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.4e-192 675.6 388 84.0
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 2.4e-192 675.6 423 79.0
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 4.1e-192 674.9 405 81.7
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 7.1e-192 674.1 423 78.0
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 9.2e-192 673.7 368 88.9
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 1.2e-191 673.3 425 78.6
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 1.2e-191 673.3 381 86.1
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 2.1e-191 672.5 400 82.8
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 2.7e-191 672.2 426 78.6
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 3.5e-191 671.8 408 81.4
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 4.6e-191 671.4 407 80.8
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 1.7e-190 669.5 427 78.9
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 2.3e-190 669.1 397 83.1
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 3.9e-190 668.3 426 78.2
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 3.9e-190 668.3 426 77.9
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 5.1e-190 667.9 380 85.3
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 8.6e-190 667.2 407 81.1
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 1.1e-189 666.8 407 81.1
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 5.6e-189 664.5 407 80.8
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 7.3e-189 664.1 368 87.0
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 1.2e-188 663.3 406 80.8
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 3.6e-188 661.8 407 80.3
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 3.1e-187 658.7 406 80.5
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 3.1e-187 658.7 420 78.8
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 1.5e-186 656.4 380 84.5
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.5e-186 656.4 400 81.2
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 2.0e-186 656.0 406 79.8
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 2.0e-186 656.0 406 81.0
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 3.4e-186 655.2 409 80.2
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 9.9e-186 653.7 406 80.8
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 4.9e-185 651.4 413 78.9
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 8.4e-185 650.6 405 80.0
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 4.1e-184 648.3 380 82.4
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 4.1e-184 648.3 427 76.3
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 5.4e-184 647.9 406 80.3
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 1.1e-181 640.2 365 84.7
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 3.3e-181 638.6 470 70.2
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 2.4e-179 632.5 368 83.7
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 9.0e-179 630.6 378 79.9
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 2.6e-178 629.0 424 71.5
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.7e-177 626.3 433 74.1
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 3.8e-177 625.2 425 75.1
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 6.4e-177 624.4 378 78.8
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 2.3e-174 615.9 378 78.0
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 5.6e-173 611.3 431 71.9
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 2.0e-170 602.8 376 80.3
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 1.8e-166 589.7 345 83.2
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 1.4e-160 570.1 377 71.1
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 6.2e-156 554.7 403 66.7
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 5.3e-155 551.6 395 71.4
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 4.9e-153 545.0 338 76.3
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 3.2e-152 542.3 369 70.5
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.6e-151 540.0 341 78.0
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.0e-150 537.3 291 90.0
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 5.3e-147 525.0 377 65.8
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 4.8e-140 501.9 288 83.3
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 8.5e-129 464.5 299 77.6
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 1.0e-126 457.6 391 62.1
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 4.0e-110 402.5 267 76.0
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 2.4e-107 393.3 280 72.9
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 9.5e-72 275.0 330 43.0
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 1.2e-71 274.6 358 40.8
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 1.6e-58 231.1 132 84.1
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 3.2e-51 206.8 118 83.1
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 4.9e-44 183.0 107 80.4
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 8.7e-33 145.6 84 79.8
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 3.1e-30 137.1 84 77.4
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 1.5e-29 134.8 84 75.0
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 1.3e-28 131.7 125 60.0
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 7.4e-24 115.9 57 91.2
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 6.9e-22 109.4 79 67.1
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.5e-19 100.9 195 33.8
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 3.0e-17 94.0 59 78.0
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 7.7e-13 79.3 50 78.0
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 1.8e-09 68.2 40 75.0
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 1.1e-08 65.5 246 24.8
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 7.4e-08 62.8 66 51.5
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 7.4e-08 62.8 157 28.7
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 3.7e-07 60.5 157 28.0
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 3.7e-07 60.5 157 28.0
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 3.7e-07 60.5 225 25.8
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 4.8e-07 60.1 223 25.1
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 8.2e-07 59.3 157 27.4
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 8.2e-07 59.3 157 27.4
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 8.2e-07 59.3 157 27.4
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 8.2e-07 59.3 223 24.7
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 8.2e-07 59.3 157 27.4
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 8.2e-07 59.3 157 27.4
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 1.1e-06 58.9 404 23.5
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 1.8e-06 58.2 215 24.7
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 2.4e-06 57.8 223 24.2
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 2.4e-06 57.8 223 26.5
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 2.4e-06 57.8 226 26.1
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 2.4e-06 57.8 223 24.7
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 4.1e-06 57.0 223 24.7
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 5.3e-06 56.6 223 23.3
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 5.3e-06 56.6 223 23.8
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 7.0e-06 56.2 223 23.8
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 7.0e-06 56.2 223 23.8
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 7.0e-06 56.2 223 24.2
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 9.1e-06 55.8 161 26.7
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 9.1e-06 55.8 159 27.7
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 9.1e-06 55.8 157 26.8
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 9.1e-06 55.8 157 26.8
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 9.1e-06 55.8 162 26.5
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 9.1e-06 55.8 162 25.9


User provided reference genes

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