Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 4.1e-262 907.5 463 100.0
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.5e-134 483.8 471 57.1
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 7.3e-134 481.5 473 56.9
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 2.4e-132 476.5 395 61.0
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 4.0e-132 475.7 446 57.2
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.2e-130 469.9 471 55.4
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.9e-129 466.8 468 55.1
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.9e-129 466.8 468 55.1
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 2.4e-129 466.5 395 59.7
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.1e-128 463.4 401 59.4
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 2.7e-128 463.0 389 60.9
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 3.0e-127 459.5 454 56.2
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 5.1e-127 458.8 442 57.5
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.5e-126 457.2 470 53.2
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.9e-126 456.8 471 54.4
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 2.5e-126 456.4 465 55.1
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 3.3e-126 456.1 447 54.4
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 3.3e-126 456.1 398 58.8
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 4.3e-126 455.7 400 58.8
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 7.4e-126 454.9 382 62.0
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.1e-125 453.4 438 56.4
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 3.6e-125 452.6 473 52.2
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 6.2e-125 451.8 471 52.0
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 1.1e-124 451.1 397 57.4
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.4e-124 450.7 440 55.0
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 2.4e-124 449.9 398 58.5
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 4.0e-124 449.1 411 59.4
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 4.0e-124 449.1 474 54.6
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 4.0e-124 449.1 435 55.4
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 1.2e-123 447.6 421 56.8
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 1.5e-123 447.2 449 54.6
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 2.0e-123 446.8 468 54.3
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 2.6e-123 446.4 397 58.9
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 2.6e-123 446.4 398 58.3
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 2.6e-123 446.4 490 52.7
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.4e-123 446.0 398 58.0
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 3.4e-123 446.0 400 58.2
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 4.5e-123 445.7 477 52.4
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.3e-122 444.1 393 59.3
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 2.2e-122 443.4 471 52.0
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 2.2e-122 443.4 422 57.1
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 2.9e-122 443.0 455 53.4
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 3.8e-122 442.6 390 57.9
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 6.4e-122 441.8 393 57.0
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 8.4e-122 441.4 475 53.5
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.1e-121 441.0 395 59.2
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.1e-121 441.0 454 53.1
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.1e-121 441.0 475 53.9
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.4e-121 440.7 471 52.4
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 9.3e-121 438.0 471 51.0
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 9.3e-121 438.0 388 58.2
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 9.3e-121 438.0 492 49.4
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 2.1e-120 436.8 396 56.6
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 2.1e-120 436.8 389 59.4
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 2.1e-120 436.8 442 53.6
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 3.5e-120 436.0 392 56.9
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 3.5e-120 436.0 474 50.8
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.0e-119 434.5 492 49.8
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.8e-119 433.7 471 50.1
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 3.9e-119 432.6 419 54.4
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 3.9e-119 432.6 414 55.3
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 3.9e-119 432.6 470 53.2
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 3.9e-119 432.6 412 56.3
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 3.9e-119 432.6 442 54.3
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 5.1e-119 432.2 390 57.7
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 5.1e-119 432.2 390 57.9
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 6.7e-119 431.8 441 53.3
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.5e-118 430.6 440 53.4
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.9e-118 430.3 442 52.9
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 2.5e-118 429.9 390 57.4
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 2.5e-118 429.9 441 53.1
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 2.5e-118 429.9 441 53.1
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 2.5e-118 429.9 392 55.9
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 4.3e-118 429.1 471 51.4
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 4.3e-118 429.1 442 53.2
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 5.6e-118 428.7 441 52.8
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 7.4e-118 428.3 473 51.2
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.3e-117 427.6 438 52.7
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 1.3e-117 427.6 471 52.0
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 3.7e-117 426.0 392 55.6
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 3.7e-117 426.0 419 55.1
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 6.2e-117 425.2 403 55.8
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 8.1e-117 424.9 442 53.4
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 2.4e-116 423.3 436 53.2
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 4.0e-116 422.5 414 54.8
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 4.9e-114 415.6 439 50.8
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 2.5e-113 413.3 469 51.6
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 1.2e-112 411.0 362 57.2
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.6e-112 410.6 400 53.5
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 3.5e-112 409.5 442 52.9
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 1.3e-111 407.5 469 49.5
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.4e-110 401.7 475 48.0
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.5e-107 392.5 471 47.1
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.7e-106 390.6 421 51.8
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.2e-104 384.4 393 53.4
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 2.1e-104 383.6 349 57.0
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.0e-103 381.3 446 48.9
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.8e-103 380.6 346 58.4
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 3.0e-103 379.8 470 47.9
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 8.7e-103 378.3 372 55.9
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 3.3e-102 376.3 462 47.2
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 8.2e-101 371.7 360 54.4
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.9e-98 363.2 398 50.8
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 8.5e-98 361.7 345 55.9
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 3.7e-93 346.3 449 47.0
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.2e-88 331.3 521 41.1
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.5e-83 312.8 380 44.2
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 1.0e-82 311.6 369 44.7
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.5e-81 307.8 408 45.3
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 4.2e-81 306.2 474 44.1
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.2e-80 304.7 323 51.4
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 3.6e-80 303.1 384 49.0
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 3.0e-79 300.1 365 45.5
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 3.0e-79 300.1 393 42.5
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 4.4e-78 296.2 391 48.1
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.3e-77 294.7 395 44.8
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.2e-74 283.9 266 56.4
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.1e-60 238.4 372 38.2
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 5.6e-57 226.1 269 46.1
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 9.8e-54 215.3 381 38.6
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.1e-48 197.6 161 60.9
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.4e-46 190.3 261 42.5
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.4e-36 156.4 226 40.3
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.5e-35 153.7 259 39.8
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 4.6e-35 153.3 139 54.0
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 6.6e-34 149.4 156 49.4
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 8.6e-34 149.1 164 49.4
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.5e-33 148.3 132 57.6
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 2.0e-30 137.9 158 48.1
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 8.4e-29 132.5 85 71.8
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 7.1e-28 129.4 113 56.6
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.3e-26 124.4 95 66.3
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.0e-26 124.0 119 50.4
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 6.2e-24 116.3 83 60.2
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.7e-18 98.2 58 74.1
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 2.3e-18 97.8 115 46.1
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 6.6e-18 96.3 115 43.5
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 8.7e-18 95.9 58 72.4
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 3.1e-15 87.4 224 29.9
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 9.0e-15 85.9 106 40.6
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 9.0e-15 85.9 56 67.9
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 5.4e-12 76.6 112 40.2
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 7.1e-12 76.3 151 33.8
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 2.3e-10 71.2 77 50.6
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 3.7e-08 63.9 148 31.8
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 4.8e-08 63.5 59 52.5
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.1e-07 60.8 152 32.2
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 2.6e-06 57.8 69 47.8


User provided reference genes

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