Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005389 Vanilla planifolia HOM05D002708 ORTHO05D003516 7.1e-53 210.3 104 100.0
MSTRG.20407 Avicennia marina HOM05D002708 ORTHO05D003516 1.5e-18 96.3 58 81.0
Oeu002888.1 Olea europaea HOM05D002708 ORTHO05D003516 1.5e-18 96.3 58 82.8
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 2.5e-18 95.5 58 82.8
Sed0010327 Sechium edule HOM05D002708 ORTHO05D003516 5.7e-18 94.4 67 74.6
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 9.7e-18 93.6 58 79.3
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 1.3e-17 93.2 59 79.7
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 1.3e-17 93.2 58 81.0
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 1.3e-17 93.2 58 77.6
HPP92_028478 Vanilla planifolia HOM05D002708 ORTHO05D003516 1.3e-17 93.2 59 78.0
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 2.2e-17 92.4 58 79.3
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 2.2e-17 92.4 58 77.6
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 2.2e-17 92.4 59 78.0
Dinv43573 Davidia involucrata HOM05D002708 ORTHO05D003516 2.8e-17 92.0 58 79.3
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 2.8e-17 92.0 58 77.6
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 2.8e-17 92.0 58 77.6
Potri.006G267500 Populus trichocarpa HOM05D002708 ORTHO05D003516 2.8e-17 92.0 57 78.9
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 2.8e-17 92.0 59 76.3
AUR62037481 Chenopodium quinoa HOM05D002708 ORTHO05D003516 3.7e-17 91.7 59 78.0
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 3.7e-17 91.7 58 77.6
EL10Ac5g11414 Beta vulgaris HOM05D002708 ORTHO05D003516 4.8e-17 91.3 59 78.0
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 4.8e-17 91.3 58 79.3
Actinidia33292 Actinidia chinensis HOM05D002708 ORTHO05D003516 6.3e-17 90.9 59 78.0
Haze_20811 Corylus avellana HOM05D002708 ORTHO05D003516 6.3e-17 90.9 58 77.6
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 6.3e-17 90.9 58 77.6
Duzib052G0664 Durio zibethinus HOM05D002708 ORTHO05D003516 6.3e-17 90.9 58 75.9
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 6.3e-17 90.9 58 77.6
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 6.3e-17 90.9 57 80.7
Cfa013020 Carpinus fangiana HOM05D002708 ORTHO05D003516 8.2e-17 90.5 58 75.9
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 8.2e-17 90.5 58 79.3
Potri.018G015200 Populus trichocarpa HOM05D002708 ORTHO05D003516 8.2e-17 90.5 58 75.9
TWI63G0006 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 8.2e-17 90.5 58 75.9
unitig_0.g1327 Utricularia gibba HOM05D002708 ORTHO05D003516 8.2e-17 90.5 57 80.7
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.1e-16 90.1 58 77.6
CiPaw.08G004600 Carya illinoinensis HOM05D002708 ORTHO05D003516 1.1e-16 90.1 58 75.9
AUR62004771 Chenopodium quinoa HOM05D002708 ORTHO05D003516 1.1e-16 90.1 59 76.3
MD12G1258100 Malus domestica HOM05D002708 ORTHO05D003516 1.1e-16 90.1 58 75.9
GSVIVG01036012001 Vitis vinifera HOM05D002708 ORTHO05D003516 1.1e-16 90.1 58 75.9
BcaC02g08409 Brassica carinata HOM05D002708 ORTHO05D003516 1.4e-16 89.7 58 77.6
BolC4t27001H Brassica oleracea HOM05D002708 ORTHO05D003516 1.4e-16 89.7 58 77.6
BraA04t17520Z Brassica rapa HOM05D002708 ORTHO05D003516 1.4e-16 89.7 58 77.6
Cfa002667 Carpinus fangiana HOM05D002708 ORTHO05D003516 1.4e-16 89.7 58 75.9
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 1.4e-16 89.7 58 75.9
Haze_24936 Corylus avellana HOM05D002708 ORTHO05D003516 1.4e-16 89.7 58 75.9
Glyma.03G002400 Glycine max HOM05D002708 ORTHO05D003516 1.4e-16 89.7 58 75.9
Glyma.07G107700 Glycine max HOM05D002708 ORTHO05D003516 1.4e-16 89.7 58 75.9
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 1.4e-16 89.7 61 75.4
CANSAT25G3904 Cannabis sativa HOM05D002708 ORTHO05D003516 1.8e-16 89.4 58 75.9
CAN.G1480.4 Capsicum annuum HOM05D002708 ORTHO05D003516 1.8e-16 89.4 59 76.3
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 1.8e-16 89.4 58 75.9
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 1.8e-16 89.4 58 74.1
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 1.8e-16 89.4 58 77.6
Phvul.009G084000 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 1.8e-16 89.4 58 75.9
Phvul.009G084100 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 1.8e-16 89.4 58 75.9
SEGI_02227 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.8e-16 89.4 57 80.7
SEGI_26246 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.8e-16 89.4 57 80.7
Thecc.02G010700 Theobroma cacao HOM05D002708 ORTHO05D003516 1.8e-16 89.4 58 74.1
Actinidia21606 Actinidia chinensis HOM05D002708 ORTHO05D003516 2.4e-16 89.0 59 76.3
DCAR_029539 Daucus carota HOM05D002708 ORTHO05D003516 2.4e-16 89.0 58 77.6
Nitab4.5_0001476g0150 Nicotiana tabacum HOM05D002708 ORTHO05D003516 2.4e-16 89.0 59 76.3
QL02p018118 Quercus lobata HOM05D002708 ORTHO05D003516 2.4e-16 89.0 58 74.1
Sp4g03800 Schrenkiella parvula HOM05D002708 ORTHO05D003516 2.4e-16 89.0 58 77.6
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 3.1e-16 88.6 75 64.0
A04p19190 Brassica napus HOM05D002708 ORTHO05D003516 3.1e-16 88.6 58 75.9
C04p54590 Brassica napus HOM05D002708 ORTHO05D003516 3.1e-16 88.6 58 75.9
Ca_15806_v3 Cicer arietinum L. HOM05D002708 ORTHO05D003516 3.1e-16 88.6 58 74.1
Thhalv10000061m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 3.1e-16 88.6 58 75.9
MD04G1241100 Malus domestica HOM05D002708 ORTHO05D003516 3.1e-16 88.6 58 74.1
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 3.1e-16 88.6 58 74.1
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 3.1e-16 88.6 58 74.1
MELO3C013234.2 Cucumis melo HOM05D002708 ORTHO05D003516 4.1e-16 88.2 58 72.4
MELO3C023701.2 Cucumis melo HOM05D002708 ORTHO05D003516 4.1e-16 88.2 58 72.4
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 4.1e-16 88.2 58 72.4
Psat5g034880 Pisum sativum HOM05D002708 ORTHO05D003516 4.1e-16 88.2 58 74.1
SEGI_28578 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 4.1e-16 88.2 57 78.9
THA.LOC104803605 Tarenaya hassleriana HOM05D002708 ORTHO05D003516 4.1e-16 88.2 58 75.9
Gohir.A03G216900 Gossypium hirsutum HOM05D002708 ORTHO05D003516 5.3e-16 87.8 58 72.4
Gohir.D02G238500 Gossypium hirsutum HOM05D002708 ORTHO05D003516 5.3e-16 87.8 58 72.4
Gorai.005G267000 Gossypium raimondii HOM05D002708 ORTHO05D003516 5.3e-16 87.8 58 72.4
Lalb_Chr08g0244681 Lupinus albus HOM05D002708 ORTHO05D003516 5.3e-16 87.8 58 75.9
MBI19_g28098_MAGBIO Magnolia biondii HOM05D002708 ORTHO05D003516 5.3e-16 87.8 75 64.0
Solyc01g088370.3 Solanum lycopersicum HOM05D002708 ORTHO05D003516 5.3e-16 87.8 59 76.3
Sopen01g035200 Solanum pennellii HOM05D002708 ORTHO05D003516 5.3e-16 87.8 59 76.3
PGSC0003DMG400001674 Solanum tuberosum HOM05D002708 ORTHO05D003516 5.3e-16 87.8 59 76.3
Atru.chr7.2587 Acer truncatum HOM05D002708 ORTHO05D003516 6.9e-16 87.4 58 72.4
ClCG09G010530 Citrullus lanatus HOM05D002708 ORTHO05D003516 6.9e-16 87.4 57 73.7
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 6.9e-16 87.4 58 74.1
BcaC07g40905 Brassica carinata HOM05D002708 ORTHO05D003516 9.0e-16 87.0 58 75.9
A09p56110 Brassica napus HOM05D002708 ORTHO05D003516 9.0e-16 87.0 58 75.9
C08p39040 Brassica napus HOM05D002708 ORTHO05D003516 9.0e-16 87.0 58 75.9
BolC8t51477H Brassica oleracea HOM05D002708 ORTHO05D003516 9.0e-16 87.0 58 75.9
BraA09t41006Z Brassica rapa HOM05D002708 ORTHO05D003516 9.0e-16 87.0 58 75.9
Lsat_1_v5_gn_7_11740 Lactuca sativa HOM05D002708 ORTHO05D003516 9.0e-16 87.0 57 75.4
Peaxi162Scf01124g00013 Petunia axillaris HOM05D002708 ORTHO05D003516 9.0e-16 87.0 59 74.6
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 9.0e-16 87.0 58 72.4
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 1.2e-15 86.7 59 74.6
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 1.2e-15 86.7 58 72.4
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 1.2e-15 86.7 58 72.4
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 1.2e-15 86.7 58 72.4
COL.COLO4_17667 Corchorus olitorius HOM05D002708 ORTHO05D003516 1.2e-15 86.7 58 70.7
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 1.2e-15 86.7 58 72.4
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 1.5e-15 86.3 75 62.7
Lj9A548G53 Lonicera japonica HOM05D002708 ORTHO05D003516 1.5e-15 86.3 58 74.1
SalBow5G4312 Salvia bowleyana HOM05D002708 ORTHO05D003516 1.5e-15 86.3 57 75.4
BcaB06g28016 Brassica carinata HOM05D002708 ORTHO05D003516 2.0e-15 85.9 58 74.1
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 2.0e-15 85.9 58 72.4
VMungo1309G2216 Vigna mungo HOM05D002708 ORTHO05D003516 2.0e-15 85.9 58 74.1
Migut.B01470 Erythranthe guttata HOM05D002708 ORTHO05D003516 2.6e-15 85.5 57 73.7
Lsat_1_v5_gn_1_83221 Lactuca sativa HOM05D002708 ORTHO05D003516 2.6e-15 85.5 58 70.7
Lalb_Chr23g0268061 Lupinus albus HOM05D002708 ORTHO05D003516 2.6e-15 85.5 58 75.9
Nitab4.5_0009957g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 2.6e-15 85.5 56 76.8
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 2.6e-15 85.5 59 72.9
Carub.0006s2495 Capsella rubella HOM05D002708 ORTHO05D003516 4.5e-15 84.7 58 74.1
CARHR294550 Cardamine hirsuta HOM05D002708 ORTHO05D003516 4.5e-15 84.7 58 74.1
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 4.5e-15 84.7 59 72.9
ECA248G0935 Erigeron canadensis HOM05D002708 ORTHO05D003516 7.7e-15 84.0 58 69.0
ECA248G3827 Erigeron canadensis HOM05D002708 ORTHO05D003516 7.7e-15 84.0 58 69.0
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 7.7e-15 84.0 60 68.3
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.0e-14 83.6 58 72.4
AL6G38780 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.0e-14 83.6 58 72.4
AL6G39390 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.0e-14 83.6 58 72.4
TAR375G0643 Trochodendron aralioides HOM05D002708 ORTHO05D003516 1.0e-14 83.6 58 70.7
Gorai.008G047600 Gossypium raimondii HOM05D002708 ORTHO05D003516 1.3e-14 83.2 58 70.7
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 1.7e-14 82.8 59 71.2
AT5G27640 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 2.2e-14 82.4 58 72.4
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 2.2e-14 82.4 59 66.1
HanXRQChr03g0088081 Helianthus annuus HOM05D002708 ORTHO05D003516 2.2e-14 82.4 58 70.7
HanXRQChr11g0341881 Helianthus annuus HOM05D002708 ORTHO05D003516 2.2e-14 82.4 58 67.2
HanXRQChr11g0352181 Helianthus annuus HOM05D002708 ORTHO05D003516 2.2e-14 82.4 58 67.2
Gohir.D12G045200 Gossypium hirsutum HOM05D002708 ORTHO05D003516 2.9e-14 82.0 58 70.7
Medtr7g056267 Medicago truncatula HOM05D002708 ORTHO05D003516 2.9e-14 82.0 66 63.6
CSS0024835 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 3.8e-14 81.6 58 70.7
CSS0039264 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 3.8e-14 81.6 58 70.7
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 3.8e-14 81.6 58 67.2
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 3.8e-14 81.6 58 67.2
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 3.8e-14 81.6 58 67.2
FAN14G0317 Fragaria x ananassa HOM05D002708 ORTHO05D003516 3.8e-14 81.6 58 67.2
Gohir.A12G046100 Gossypium hirsutum HOM05D002708 ORTHO05D003516 5.0e-14 81.3 58 69.0
SGA_v2.0_scaffold85G26804 Striga asiatica HOM05D002708 ORTHO05D003516 5.0e-14 81.3 60 66.7
Lj1g0008805 Lotus japonicus HOM05D002708 ORTHO05D003516 6.5e-14 80.9 58 67.2
Os10g0569200 Oryza sativa ssp. japonica HOM05D002708 ORTHO05D003516 6.5e-14 80.9 58 67.2
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 8.5e-14 80.5 61 65.6
AT5G25780 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 8.5e-14 80.5 57 70.2
Cpa.g.sc17.146 Carica papaya HOM05D002708 ORTHO05D003516 8.5e-14 80.5 72 65.3
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 1.1e-13 80.1 58 65.5
TPR.G40117 Trifolium pratense HOM05D002708 ORTHO05D003516 1.1e-13 80.1 60 65.0
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 1.1e-13 80.1 59 69.5
COL.COLO4_30887 Corchorus olitorius HOM05D002708 ORTHO05D003516 1.6e-12 76.3 57 64.9
CSS0029201 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 3.6e-12 75.1 58 69.0
SGA_v2.0_scaffold578G53025 Striga asiatica HOM05D002708 ORTHO05D003516 5.1e-11 71.2 44 79.5
Thhalv10027018m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 6.7e-11 70.9 60 56.7
Lsat_1_v5_gn_8_82921 Lactuca sativa HOM05D002708 ORTHO05D003516 8.8e-11 70.5 75 53.3
PSO384G0469 Papaver somniferum HOM05D002708 ORTHO05D003516 9.7e-10 67.0 61 54.1
BcaNung04121 Brassica carinata HOM05D002708 ORTHO05D003516 4.8e-09 64.7 58 53.4
Pp3c11_25960 Physcomitrium patens HOM05D002708 ORTHO05D003516 1.8e-08 62.8 59 54.2
Pp3c7_370 Physcomitrium patens HOM05D002708 ORTHO05D003516 1.8e-08 62.8 59 54.2
BcaNung01503 Brassica carinata HOM05D002708 ORTHO05D003516 1.5e-07 59.7 58 51.7
C07p58860 Brassica napus HOM05D002708 ORTHO05D003516 1.5e-07 59.7 58 51.7
BolC7t46333H Brassica oleracea HOM05D002708 ORTHO05D003516 1.5e-07 59.7 58 51.7
QL08p065006 Quercus lobata HOM05D002708 ORTHO05D003516 2.0e-07 59.3 44 65.9
Peaxi162Scf01124g00123 Petunia axillaris HOM05D002708 ORTHO05D003516 2.6e-07 58.9 55 60.0
CBR_g32387 Chara braunii HOM05D002708 ORTHO05D003516 4.5e-07 58.2 74 41.9
Aa31LG2G18580 Aethionema arabicum HOM05D002708 ORTHO05D003516 5.9e-07 57.8 60 48.3
Mapoly0108s0028 Marchantia polymorpha HOM05D002708 ORTHO05D003516 5.9e-07 57.8 59 52.5
SMO270G0119 Selaginella moellendorffii HOM05D002708 ORTHO05D003516 1.7e-06 56.2 58 51.7
Cre03.g190100 Chlamydomonas reinhardtii HOM05D002708 ORTHO05D003516 8.5e-06 53.9 75 44.0


User provided reference genes

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