Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.2e-178 629.8 320 100.0
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 2.8e-84 316.2 243 66.3
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 2.0e-82 310.1 295 59.0
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 6.5e-81 305.1 240 65.8
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.5e-80 302.0 300 57.7
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 9.4e-80 301.2 228 68.9
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.6e-79 300.4 227 68.7
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 1.6e-79 300.4 220 69.5
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.6e-79 300.4 227 68.3
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.4e-78 297.4 287 57.8
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.9e-78 295.8 227 67.4
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 6.7e-78 295.0 213 69.0
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 2.6e-77 293.1 231 64.9
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 4.4e-77 292.4 212 67.5
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 5.7e-77 292.0 225 67.6
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 5.7e-77 292.0 244 62.7
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 9.7e-77 291.2 229 65.9
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.7e-76 290.4 219 70.3
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 1.7e-76 290.4 262 59.5
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.8e-76 289.7 298 54.4
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 3.7e-76 289.3 213 68.5
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 4.8e-76 288.9 230 65.2
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 4.8e-76 288.9 239 64.0
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 4.8e-76 288.9 299 55.5
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 6.3e-76 288.5 226 65.9
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 6.3e-76 288.5 220 64.5
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.1e-75 287.7 274 57.3
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.1e-75 287.7 230 63.5
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 1.1e-75 287.7 319 53.9
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.4e-75 287.3 233 63.5
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 1.4e-75 287.3 219 69.9
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 1.4e-75 287.3 240 61.2
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.4e-75 287.3 212 66.5
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.4e-75 287.3 225 64.9
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.8e-75 287.0 227 66.5
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.8e-75 287.0 227 66.5
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 2.4e-75 286.6 275 58.2
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 4.1e-75 285.8 229 66.4
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.1e-75 285.8 260 59.2
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 4.1e-75 285.8 273 59.0
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 5.3e-75 285.4 257 58.8
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 5.3e-75 285.4 256 59.4
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 5.3e-75 285.4 234 62.4
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 7.0e-75 285.0 299 54.5
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 7.0e-75 285.0 231 64.5
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 9.1e-75 284.6 229 65.5
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 9.1e-75 284.6 219 65.8
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 1.2e-74 284.3 237 62.9
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.2e-74 284.3 224 67.4
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.2e-74 284.3 272 57.4
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.6e-74 283.9 260 58.8
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 2.6e-74 283.1 225 64.9
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 2.6e-74 283.1 249 59.4
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 2.6e-74 283.1 229 62.9
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 3.5e-74 282.7 224 65.6
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 3.5e-74 282.7 249 60.6
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 4.5e-74 282.3 218 67.0
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 7.7e-74 281.6 229 65.1
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 7.7e-74 281.6 228 63.2
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.0e-73 281.2 222 62.2
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.0e-73 281.2 217 65.4
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 1.7e-73 280.4 261 56.3
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.7e-73 280.4 242 60.7
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.7e-73 280.4 240 61.7
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.7e-73 280.4 213 65.7
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 2.2e-73 280.0 250 59.2
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 2.2e-73 280.0 219 66.2
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.9e-73 279.6 227 65.6
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 3.8e-73 279.3 262 55.7
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.8e-73 279.3 249 59.8
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 3.8e-73 279.3 227 63.0
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 5.0e-73 278.9 229 61.6
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 6.5e-73 278.5 226 63.7
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 8.5e-73 278.1 271 55.4
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 8.5e-73 278.1 233 60.1
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.1e-72 277.7 253 57.7
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.1e-72 277.7 256 58.6
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 2.5e-72 276.6 250 58.4
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.2e-72 276.2 208 67.3
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 3.2e-72 276.2 233 60.9
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 3.2e-72 276.2 216 63.4
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 3.2e-72 276.2 231 64.5
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 5.5e-72 275.4 296 51.4
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 7.2e-72 275.0 288 51.7
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 7.2e-72 275.0 263 54.0
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 7.2e-72 275.0 288 51.7
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 7.2e-72 275.0 211 64.9
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 7.2e-72 275.0 228 62.3
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 9.4e-72 274.6 297 51.9
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 2.1e-71 273.5 202 64.4
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 2.7e-71 273.1 288 51.4
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 2.7e-71 273.1 214 64.0
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 2.7e-71 273.1 285 53.3
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 5.2e-70 268.9 195 69.2
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 2.0e-69 266.9 236 60.2
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 3.3e-69 266.2 233 60.9
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 9.7e-69 264.6 250 59.6
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 4.1e-67 259.2 211 63.0
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 5.3e-67 258.8 222 63.5
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 5.3e-67 258.8 164 76.2
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 1.2e-66 257.7 219 62.6
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.0e-66 256.9 171 73.7
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 3.6e-63 246.1 225 58.7
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 8.0e-63 245.0 187 65.8
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.6e-61 240.0 312 46.2
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 8.3e-60 235.0 301 46.2
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.2e-58 231.1 179 64.8
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.5e-56 223.4 132 80.3
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.1e-55 220.3 225 53.8
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.6e-53 213.4 174 59.2
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 7.0e-51 205.3 194 57.7
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-50 204.5 218 51.4
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.0e-50 203.8 213 52.1
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 7.8e-50 201.8 215 50.7
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 3.8e-49 199.5 248 48.4
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.8e-49 199.5 216 51.4
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 2.5e-48 196.8 145 64.8
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.6e-45 186.8 261 42.5
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 6.6e-41 172.2 181 50.8
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 8.9e-38 161.8 220 40.9
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 3.4e-37 159.8 113 66.4
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.7e-36 157.5 193 42.5
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 4.3e-32 142.9 149 49.0
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 3.1e-30 136.7 166 47.0
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.4e-27 127.9 143 49.0
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 3.2e-27 126.7 106 58.5
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 7.1e-27 125.6 198 37.4
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.6e-26 124.4 226 40.3
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 9.5e-24 115.2 220 36.8
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 3.2e-19 100.1 105 45.7
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 2.1e-18 97.4 88 53.4
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 1.2e-15 88.2 71 62.0
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 1.8e-14 84.3 71 59.2
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.4e-13 80.1 73 50.7
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.3e-07 61.6 40 77.5
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.6e-07 61.2 105 33.3
CDE02G0724 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 5.3e-06 56.2 79 48.1
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 6.9e-06 55.8 36 69.4


User provided reference genes

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