Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.3e-205 719.5 370 100.0
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 5.8e-158 561.2 366 79.8
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.6e-155 551.6 340 83.8
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.9e-155 550.8 363 79.9
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.9e-155 550.8 363 79.9
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.9e-154 548.5 339 83.5
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 5.1e-154 548.1 363 79.3
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 2.5e-153 545.8 342 81.6
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.3e-152 543.5 327 84.7
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 6.2e-152 541.2 329 83.0
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.2e-150 537.0 335 81.5
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.6e-150 535.8 367 75.2
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 3.4e-150 535.4 327 83.5
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 4.5e-150 535.0 356 77.2
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 5.8e-150 534.6 366 75.7
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 5.8e-150 534.6 329 81.8
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.2e-148 528.9 346 77.5
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 4.2e-148 528.5 332 80.7
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 9.3e-148 527.3 346 77.2
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 1.2e-147 526.9 340 76.8
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 2.7e-147 525.8 363 76.6
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 2.7e-147 525.8 362 76.0
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 2.7e-147 525.8 344 78.8
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 3.5e-147 525.4 348 79.0
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 3.5e-147 525.4 334 81.1
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 6.0e-147 524.6 315 83.5
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 7.9e-147 524.2 342 78.4
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 7.9e-147 524.2 347 79.0
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 1.0e-146 523.9 356 76.4
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.0e-146 523.9 331 78.5
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.8e-146 523.1 332 80.7
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.8e-146 523.1 315 83.2
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 2.3e-146 522.7 332 80.1
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 3.9e-146 521.9 343 79.0
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 3.9e-146 521.9 331 78.2
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.1e-146 521.5 315 82.9
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 5.1e-146 521.5 367 75.2
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 6.7e-146 521.2 336 79.2
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 8.7e-146 520.8 344 78.5
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.1e-145 520.4 344 76.7
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.5e-145 520.0 340 77.1
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.5e-145 520.0 351 75.8
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.9e-145 519.6 377 74.3
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 3.3e-145 518.8 369 73.4
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 3.3e-145 518.8 351 75.5
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 4.3e-145 518.5 374 73.5
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 5.7e-145 518.1 369 74.3
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 7.4e-145 517.7 342 76.3
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 9.6e-145 517.3 345 76.8
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.6e-144 516.5 345 77.7
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.6e-144 516.5 343 77.8
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 2.1e-144 516.2 323 81.7
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.8e-144 515.8 330 79.1
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 2.8e-144 515.8 351 74.4
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 3.7e-144 515.4 349 75.9
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 4.8e-144 515.0 320 82.8
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 4.8e-144 515.0 367 73.8
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 6.2e-144 514.6 362 72.9
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 8.2e-144 514.2 351 75.5
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.1e-143 513.8 348 74.1
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.4e-143 513.5 348 76.4
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.4e-143 513.5 348 76.1
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.8e-143 513.1 341 77.4
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 3.1e-143 512.3 341 78.3
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 3.1e-143 512.3 346 76.0
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 3.1e-143 512.3 344 77.9
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 3.1e-143 512.3 358 75.4
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 6.9e-143 511.1 343 77.0
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 6.9e-143 511.1 364 73.6
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 9.0e-143 510.8 342 77.2
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.2e-142 510.4 363 74.4
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.5e-142 510.0 345 76.2
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.5e-142 510.0 343 76.4
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 2.0e-142 509.6 332 78.3
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 3.4e-142 508.8 354 73.7
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 3.4e-142 508.8 353 73.1
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 7.6e-142 507.7 368 71.5
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 7.6e-142 507.7 343 76.1
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 1.3e-141 506.9 341 76.2
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 1.3e-141 506.9 339 77.9
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.7e-141 506.5 361 72.3
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.7e-141 506.5 354 73.4
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 1.7e-141 506.5 373 70.2
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 2.2e-141 506.1 341 76.8
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 3.8e-141 505.4 342 76.3
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 6.5e-141 504.6 337 77.2
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 8.4e-141 504.2 330 75.8
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 8.4e-141 504.2 344 76.2
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.4e-140 503.4 333 78.7
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.2e-140 502.3 352 73.9
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 3.2e-140 502.3 341 76.0
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 4.2e-140 501.9 353 73.9
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 5.5e-140 501.5 348 75.9
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 9.3e-140 500.7 299 82.9
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.2e-139 500.4 357 73.1
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-139 500.0 359 72.4
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 2.1e-139 499.6 321 78.8
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.1e-139 498.0 360 72.5
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.3e-138 496.9 346 74.9
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 3.9e-138 495.4 345 74.8
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 5.1e-138 495.0 344 74.4
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 5.1e-138 495.0 330 76.1
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.1e-138 495.0 330 76.1
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.1e-138 495.0 337 76.6
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 6.7e-138 494.6 345 73.3
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 6.7e-138 494.6 436 62.4
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 8.7e-138 494.2 309 80.9
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 2.5e-137 492.7 341 74.5
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 3.3e-137 492.3 345 73.0
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 3.3e-137 492.3 345 73.9
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 4.3e-137 491.9 345 73.6
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 4.3e-137 491.9 345 73.6
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 5.7e-137 491.5 334 74.6
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.7e-137 491.5 326 76.4
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 7.4e-137 491.1 346 74.3
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 7.4e-137 491.1 406 65.0
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 9.7e-137 490.7 341 74.8
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 9.7e-137 490.7 362 71.8
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 9.7e-137 490.7 341 74.8
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.3e-136 490.3 345 73.9
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.3e-136 490.3 362 71.5
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.3e-136 490.3 330 73.0
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 1.6e-136 490.0 334 75.1
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 2.2e-136 489.6 334 74.9
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 4.8e-136 488.4 335 75.2
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 4.8e-136 488.4 335 75.2
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.1e-135 487.3 345 72.8
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.8e-135 486.5 381 67.2
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.8e-135 486.5 299 79.6
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.4e-135 486.1 316 77.5
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.3e-135 485.0 342 73.7
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 4.5e-134 481.9 322 77.0
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 4.5e-134 481.9 343 71.7
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.9e-133 479.2 329 74.8
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.9e-133 479.2 329 74.8
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 3.8e-133 478.8 285 83.5
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.9e-132 476.5 298 79.2
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.5e-132 476.1 316 75.3
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.2e-132 474.6 316 76.6
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.6e-131 473.4 316 80.7
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 7.9e-131 471.1 335 73.4
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.0e-130 470.7 369 67.2
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 5.1e-130 468.4 337 70.9
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.7e-129 464.9 285 82.1
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 2.2e-128 463.0 319 75.5
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 6.5e-125 451.4 345 69.6
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.6e-123 446.8 361 67.3
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 5.0e-117 425.2 343 64.7
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 3.7e-112 409.1 321 65.4
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.3e-104 384.0 290 65.2
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 2.7e-102 376.3 250 77.2
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.6e-99 367.1 250 75.2
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 5.7e-97 358.6 266 72.2
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.7e-93 347.1 267 71.5
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 8.1e-75 285.0 301 58.1
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 4.0e-74 282.7 306 51.0
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 1.7e-72 277.3 194 76.8
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 2.8e-67 260.0 204 67.6
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 5.4e-63 245.7 364 44.5
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 8.4e-48 195.3 113 83.2
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 4.3e-44 183.0 113 77.9
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 5.6e-36 156.0 283 35.7
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.3e-35 154.8 175 54.3
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.3e-35 154.8 175 54.3
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.6e-35 154.5 193 51.8
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.0e-29 135.2 101 65.3
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 3.9e-29 133.3 98 66.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 5.1e-29 132.9 99 66.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 5.1e-29 132.9 99 66.7
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 3.3e-28 130.2 99 65.7
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 2.8e-27 127.1 103 62.1
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 9.0e-26 122.1 104 57.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.3e-24 118.2 103 57.3
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 4.8e-19 99.8 64 75.0
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 8.5e-16 89.0 73 68.5
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.8e-13 81.3 49 79.6
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 1.8e-13 81.3 64 71.9


User provided reference genes

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