Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000706 Vanilla planifolia HOM05D003562 ORTHO05D004074 1.7e-129 466.1 242 100.0
HPP92_000641 Vanilla planifolia HOM05D003562 ORTHO05D004074 4.2e-88 328.6 171 98.8
Nn2g14890 Nelumbo nucifera HOM05D003562 ORTHO05D004074 1.6e-47 193.7 224 49.1
Actinidia06246 Actinidia chinensis HOM05D003562 ORTHO05D004074 3.0e-46 189.5 208 50.0
Manes.04G160200 Manihot esculenta HOM05D003562 ORTHO05D004074 2.0e-45 186.8 209 47.8
Cpa.g.sc30.42 Carica papaya HOM05D003562 ORTHO05D004074 5.7e-45 185.3 212 48.1
CiPaw.14G007100 Carya illinoinensis HOM05D003562 ORTHO05D004074 9.7e-45 184.5 214 49.1
Atru.chr12.1362 Acer truncatum HOM05D003562 ORTHO05D004074 1.7e-44 183.7 218 49.5
Hma1.2p1_1396F.1_g280630 Hydrangea macrophylla HOM05D003562 ORTHO05D004074 1.7e-44 183.7 210 48.1
ATR0763G113 Amborella trichopoda HOM05D003562 ORTHO05D004074 2.2e-44 183.3 212 46.2
Rhsim07G0066600 Rhododendron simsii HOM05D003562 ORTHO05D004074 6.3e-44 181.8 222 45.5
RhsimUnG0111400 Rhododendron simsii HOM05D003562 ORTHO05D004074 6.3e-44 181.8 222 45.5
CSS0041933 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.8e-43 180.3 207 46.9
SalBow7G2199 Salvia bowleyana HOM05D003562 ORTHO05D004074 2.4e-43 179.9 218 47.2
CANSAT35G1715 Cannabis sativa HOM05D003562 ORTHO05D004074 3.1e-43 179.5 214 47.7
Sabra03G0147400 Salix brachista HOM05D003562 ORTHO05D004074 4.1e-43 179.1 215 46.0
MD02G1270100 Malus domestica HOM05D003562 ORTHO05D004074 5.3e-43 178.7 179 52.0
TAR636G2713 Trochodendron aralioides HOM05D003562 ORTHO05D004074 5.3e-43 178.7 218 46.3
Glyma.06G083300 Glycine max HOM05D003562 ORTHO05D004074 6.9e-43 178.3 211 46.9
Glyma.11G154000 Glycine max HOM05D003562 ORTHO05D004074 6.9e-43 178.3 211 46.4
Aqoxy1G00347 Aquilegia oxysepala HOM05D003562 ORTHO05D004074 9.1e-43 177.9 213 46.5
Potri.001G026700 Populus trichocarpa HOM05D003562 ORTHO05D004074 9.1e-43 177.9 211 46.9
PSO384G3387 Papaver somniferum HOM05D003562 ORTHO05D004074 1.2e-42 177.6 174 52.3
Potri.003G198000 Populus trichocarpa HOM05D003562 ORTHO05D004074 1.2e-42 177.6 211 46.9
Cfa010886 Carpinus fangiana HOM05D003562 ORTHO05D004074 1.5e-42 177.2 214 47.7
Thecc.10G162500 Theobroma cacao HOM05D003562 ORTHO05D004074 1.5e-42 177.2 210 47.6
Gorai.011G213800 Gossypium raimondii HOM05D003562 ORTHO05D004074 2.0e-42 176.8 220 45.0
vmacro13748 Vaccinium macrocarpon HOM05D003562 ORTHO05D004074 2.0e-42 176.8 229 44.1
arahy.Tifrunner.gnm1.ann1.T72YSL Arachis hypogaea HOM05D003562 ORTHO05D004074 2.6e-42 176.4 238 42.9
Ciclev10029023m.g Citrus clementina HOM05D003562 ORTHO05D004074 2.6e-42 176.4 222 47.3
COL.COLO4_07204 Corchorus olitorius HOM05D003562 ORTHO05D004074 2.6e-42 176.4 227 44.9
Haze_03073 Corylus avellana HOM05D003562 ORTHO05D004074 2.6e-42 176.4 214 47.2
CiPaw.13G012700 Carya illinoinensis HOM05D003562 ORTHO05D004074 3.4e-42 176.0 214 46.7
MD06G1045900 Malus domestica HOM05D003562 ORTHO05D004074 4.5e-42 175.6 217 45.6
Phvul.005G028600 Phaseolus vulgaris HOM05D003562 ORTHO05D004074 4.5e-42 175.6 207 47.3
Duzib128G0310 Durio zibethinus HOM05D003562 ORTHO05D004074 5.9e-42 175.3 221 44.3
Gohir.D10G190700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 5.9e-42 175.3 220 44.5
Oeu015695.4 Olea europaea HOM05D003562 ORTHO05D004074 5.9e-42 175.3 206 47.6
Potri.T125306 Populus trichocarpa HOM05D003562 ORTHO05D004074 7.7e-42 174.9 211 46.0
CSS0045780 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.0e-41 174.5 207 45.9
Ah.04g155210 Amaranthus hybridus HOM05D003562 ORTHO05D004074 1.3e-41 174.1 210 44.8
Migut.N01839 Erythranthe guttata HOM05D003562 ORTHO05D004074 1.3e-41 174.1 213 46.9
PGR142G2845 Punica granatum HOM05D003562 ORTHO05D004074 1.3e-41 174.1 211 44.5
CAN.G1074.6 Capsicum annuum HOM05D003562 ORTHO05D004074 1.7e-41 173.7 174 49.4
Cc01_g07880 Coffea canephora HOM05D003562 ORTHO05D004074 2.2e-41 173.3 207 45.4
DCAR_022850 Daucus carota HOM05D003562 ORTHO05D004074 2.9e-41 172.9 206 47.1
Nitab4.5_0000320g0220 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.9e-41 172.9 174 50.0
Duzib114G0768 Durio zibethinus HOM05D003562 ORTHO05D004074 3.8e-41 172.6 210 44.8
Eucgr.G03239 Eucalyptus grandis HOM05D003562 ORTHO05D004074 5.0e-41 172.2 213 46.9
Ah.04g155220 Amaranthus hybridus HOM05D003562 ORTHO05D004074 6.5e-41 171.8 210 44.3
Lj8P275T68 Lonicera japonica HOM05D003562 ORTHO05D004074 6.5e-41 171.8 209 45.5
Sp6g21260 Schrenkiella parvula HOM05D003562 ORTHO05D004074 8.5e-41 171.4 174 48.3
TWI32G0119 Tripterygium wilfordii HOM05D003562 ORTHO05D004074 8.5e-41 171.4 218 43.6
FAN04G2150 Fragaria x ananassa HOM05D003562 ORTHO05D004074 1.1e-40 171.0 209 45.9
Sc10g0004400 Simmondsia chinensis HOM05D003562 ORTHO05D004074 1.1e-40 171.0 210 45.2
Solyc11g005260.2 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.1e-40 171.0 211 44.5
Sopen11g001270 Solanum pennellii HOM05D003562 ORTHO05D004074 1.1e-40 171.0 211 44.5
CARHR273020 Cardamine hirsuta HOM05D003562 ORTHO05D004074 1.4e-40 170.6 213 43.2
QL04p014579 Quercus lobata HOM05D003562 ORTHO05D004074 1.4e-40 170.6 214 44.9
Sed0007359 Sechium edule HOM05D003562 ORTHO05D004074 1.4e-40 170.6 220 43.6
Gohir.D10G190150 Gossypium hirsutum HOM05D003562 ORTHO05D004074 1.9e-40 170.2 220 43.6
Gohir.D10G190200 Gossypium hirsutum HOM05D003562 ORTHO05D004074 1.9e-40 170.2 220 43.6
QL04p014940 Quercus lobata HOM05D003562 ORTHO05D004074 1.9e-40 170.2 215 44.7
Gohir.A10G183700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 2.5e-40 169.9 220 43.6
Prupe.7G009600 Prunus persica HOM05D003562 ORTHO05D004074 2.5e-40 169.9 214 46.3
VMungo1080G1790 Vigna mungo HOM05D003562 ORTHO05D004074 2.5e-40 169.9 207 45.4
Cc00_g22970 Coffea canephora HOM05D003562 ORTHO05D004074 3.2e-40 169.5 207 44.0
FvH4_5g25300 Fragaria vesca HOM05D003562 ORTHO05D004074 3.2e-40 169.5 209 45.9
Peaxi162Scf00128g00115 Petunia axillaris HOM05D003562 ORTHO05D004074 3.2e-40 169.5 207 45.4
MSTRG.16988 Avicennia marina HOM05D003562 ORTHO05D004074 4.2e-40 169.1 225 45.3
ClCG01G007760 Citrullus lanatus HOM05D003562 ORTHO05D004074 4.2e-40 169.1 221 43.9
Peaxi162Scf00025g00152 Petunia axillaris HOM05D003562 ORTHO05D004074 4.2e-40 169.1 207 45.4
AL8G36050 Arabidopsis lyrata HOM05D003562 ORTHO05D004074 5.5e-40 168.7 234 41.5
MELO3C005120.2 Cucumis melo HOM05D003562 ORTHO05D004074 5.5e-40 168.7 221 43.9
SGA_v2.0_scaffold71G23983 Striga asiatica HOM05D003562 ORTHO05D004074 5.5e-40 168.7 215 44.7
THA.LOC104807160 Tarenaya hassleriana HOM05D003562 ORTHO05D004074 5.5e-40 168.7 215 43.3
CDE12G0865 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 7.2e-40 168.3 215 44.2
AUR62037195 Chenopodium quinoa HOM05D003562 ORTHO05D004074 7.2e-40 168.3 206 44.2
CsaV3_5G024840 Cucumis sativus L. HOM05D003562 ORTHO05D004074 7.2e-40 168.3 222 43.2
Psat5g217800 Pisum sativum HOM05D003562 ORTHO05D004074 7.2e-40 168.3 226 42.0
Dinv09273 Davidia involucrata HOM05D003562 ORTHO05D004074 1.2e-39 167.5 214 43.9
Lsat_1_v5_gn_6_15520 Lactuca sativa HOM05D003562 ORTHO05D004074 1.2e-39 167.5 216 43.5
TPR.G17800 Trifolium pratense HOM05D003562 ORTHO05D004074 1.2e-39 167.5 215 43.3
TAR636G1695 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.2e-39 167.5 189 47.1
Ca_27897_v3 Cicer arietinum L. HOM05D003562 ORTHO05D004074 1.6e-39 167.2 219 42.5
FAN13G2751 Fragaria x ananassa HOM05D003562 ORTHO05D004074 2.1e-39 166.8 209 45.5
unitig_747.g21707 Utricularia gibba HOM05D003562 ORTHO05D004074 2.1e-39 166.8 214 43.9
GSVIVG01037424001 Vitis vinifera HOM05D003562 ORTHO05D004074 2.1e-39 166.8 219 45.2
Thhalv10014282m.g Eutrema salsugineum HOM05D003562 ORTHO05D004074 2.7e-39 166.4 219 42.9
Medtr3g017470 Medicago truncatula HOM05D003562 ORTHO05D004074 2.7e-39 166.4 216 43.5
BolC2t07341H Brassica oleracea HOM05D003562 ORTHO05D004074 3.6e-39 166.0 174 47.1
Carub.0008s2023 Capsella rubella HOM05D003562 ORTHO05D004074 3.6e-39 166.0 210 43.8
AT5G59560 Arabidopsis thaliana HOM05D003562 ORTHO05D004074 4.7e-39 165.6 190 44.7
BcaB08g36248 Brassica carinata HOM05D003562 ORTHO05D004074 4.7e-39 165.6 213 42.7
CSS0019906 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 4.7e-39 165.6 207 44.4
ECA233G2618 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.7e-39 165.6 214 43.5
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 6.1e-39 165.2 175 47.4
C02p12410 Brassica napus HOM05D003562 ORTHO05D004074 6.1e-39 165.2 206 42.7
BcaB05g22520 Brassica carinata HOM05D003562 ORTHO05D004074 7.9e-39 164.9 206 42.7
FAN18G1494 Fragaria x ananassa HOM05D003562 ORTHO05D004074 7.9e-39 164.9 209 45.5
BcaC03g14002 Brassica carinata HOM05D003562 ORTHO05D004074 2.3e-38 163.3 206 42.7
TAR636G0244 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.3e-38 163.3 189 45.0
BcaC04g19758 Brassica carinata HOM05D003562 ORTHO05D004074 3.0e-38 162.9 174 46.0
C09p51940 Brassica napus HOM05D003562 ORTHO05D004074 3.0e-38 162.9 174 46.0
BolC9t58057H Brassica oleracea HOM05D003562 ORTHO05D004074 3.0e-38 162.9 174 46.0
A10p16750 Brassica napus HOM05D003562 ORTHO05D004074 3.9e-38 162.5 210 42.4
Lalb_Chr03g0032801 Lupinus albus HOM05D003562 ORTHO05D004074 5.1e-38 162.2 214 43.9
HanXRQChr12g0359541 Helianthus annuus HOM05D003562 ORTHO05D004074 6.7e-38 161.8 221 43.9
PSO339G2283 Papaver somniferum HOM05D003562 ORTHO05D004074 3.3e-37 159.5 215 41.9
A02p07060 Brassica napus HOM05D003562 ORTHO05D004074 4.4e-37 159.1 224 39.7
BraA02t05786Z Brassica rapa HOM05D003562 ORTHO05D004074 4.4e-37 159.1 224 39.7
TAR636G2742 Trochodendron aralioides HOM05D003562 ORTHO05D004074 4.4e-37 159.1 188 45.7
Lj3g0004154 Lotus japonicus HOM05D003562 ORTHO05D004074 5.7e-37 158.7 216 43.1
BraA10t43756Z Brassica rapa HOM05D003562 ORTHO05D004074 1.7e-36 157.1 215 41.4
SHI01272 Sapria himalayana HOM05D003562 ORTHO05D004074 1.7e-36 157.1 210 42.9
unitig_26.g9509 Utricularia gibba HOM05D003562 ORTHO05D004074 5.3e-35 152.1 214 41.1
BcaB07g34157 Brassica carinata HOM05D003562 ORTHO05D004074 9.1e-35 151.4 227 41.9
ECA247G0148 Erigeron canadensis HOM05D003562 ORTHO05D004074 2.0e-34 150.2 197 43.7
Zm00001eb188200 Zea mays HOM05D003562 ORTHO05D004074 2.0e-34 150.2 216 45.8
PGSC0003DMG400006036 Solanum tuberosum HOM05D003562 ORTHO05D004074 7.7e-34 148.3 260 35.8
Nitab4.5_0010864g0010 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.2e-33 146.7 158 47.5
TAR636G1892 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.9e-33 146.4 162 46.3
Os05g0118000 Oryza sativa ssp. japonica HOM05D003562 ORTHO05D004074 6.7e-30 135.2 215 43.3
Actinidia10167 Actinidia chinensis HOM05D003562 ORTHO05D004074 3.3e-29 132.9 115 59.1
TAR636G1190 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.1e-27 127.9 189 39.7
CDE01G0515 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 5.9e-26 122.1 210 38.1
Dinv02658 Davidia involucrata HOM05D003562 ORTHO05D004074 2.9e-25 119.8 200 37.0
CSS0043492 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.5e-24 117.5 209 36.4
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.9e-24 117.1 168 39.9
Ah.10g030580 Amaranthus hybridus HOM05D003562 ORTHO05D004074 1.2e-23 114.4 210 35.7
BolC2t11811H Brassica oleracea HOM05D003562 ORTHO05D004074 8.0e-23 111.7 135 45.2
Rhsim08G0039700 Rhododendron simsii HOM05D000884 ORTHO05D002127 4.0e-22 109.4 159 37.1
Lsat_1_v5_gn_3_4941 Lactuca sativa HOM05D003562 ORTHO05D004074 5.2e-22 109.0 161 42.2
Pp3c12_13390 Physcomitrium patens HOM05D003562 ORTHO05D004074 8.8e-22 108.2 119 46.2
Pp3c25_14670 Physcomitrium patens HOM05D003562 ORTHO05D004074 2.0e-21 107.1 115 47.8
Lsat_1_v5_gn_4_44700 Lactuca sativa HOM05D003562 ORTHO05D004074 3.4e-21 106.3 151 44.4
Mapoly0008s0158 Marchantia polymorpha HOM05D003562 ORTHO05D004074 3.4e-21 106.3 115 44.3
CDE01G0328 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 5.7e-21 105.5 249 32.1
vmacro18374 Vaccinium macrocarpon HOM05D000884 ORTHO05D002127 7.5e-21 105.1 165 36.4
QL06p011807 Quercus lobata HOM05D003562 ORTHO05D004074 9.8e-21 104.8 156 38.5
CARHR266600 Cardamine hirsuta HOM05D003562 ORTHO05D004074 2.2e-20 103.6 138 42.0
BraA02t08793Z Brassica rapa HOM05D003562 ORTHO05D004074 2.4e-19 100.1 132 44.7
CANSAT11G2219 Cannabis sativa HOM05D003562 ORTHO05D004074 4.5e-18 95.9 164 39.0
SMO164G0021 Selaginella moellendorffii HOM05D003562 ORTHO05D004074 4.5e-18 95.9 168 35.1
AUR62026879 Chenopodium quinoa HOM05D003562 ORTHO05D004074 1.0e-17 94.7 149 40.9
CANSAT11G2347 Cannabis sativa HOM05D003562 ORTHO05D004074 3.8e-17 92.8 162 38.3
PRCOL_00000242 Prasinoderma coloniale HOM05D003562 ORTHO05D004074 3.8e-17 92.8 117 47.0
HanXRQChr06g0173441 Helianthus annuus HOM05D003562 ORTHO05D004074 5.0e-17 92.4 126 39.7
PGSC0003DMG400009785 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.5e-16 90.9 111 45.9
BolC2t11816H Brassica oleracea HOM05D003562 ORTHO05D004074 1.9e-16 90.5 134 41.0
CANSAT01G2732 Cannabis sativa HOM05D003562 ORTHO05D004074 1.9e-16 90.5 167 38.3
Nitab4.5_0004377g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 3.2e-16 89.7 155 36.1
Thecc.07G145200 Theobroma cacao HOM05D003562 ORTHO05D004074 3.2e-16 89.7 161 36.0
CAN.G557.10 Capsicum annuum HOM05D003562 ORTHO05D004074 5.5e-16 89.0 160 34.4
PGSC0003DMG400006062 Solanum tuberosum HOM05D003562 ORTHO05D004074 7.2e-16 88.6 160 35.0
AagrBONN_evm.TU.Sc2ySwM_362.1627 Anthoceros agrestis HOM05D003562 ORTHO05D004074 9.4e-16 88.2 115 42.6
Thecc.07G145100 Theobroma cacao HOM05D003562 ORTHO05D004074 1.2e-15 87.8 107 43.0
CAN.G557.9 Capsicum annuum HOM05D003562 ORTHO05D004074 1.6e-15 87.4 160 34.4
Nitab4.5_0002396g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.1e-15 87.0 160 33.8
Solyc11g005180.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 3.6e-15 86.3 117 40.2
Sopen11g001180 Solanum pennellii HOM05D003562 ORTHO05D004074 3.6e-15 86.3 171 35.7
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.3e-14 83.6 102 41.2
PGSC0003DMG400039163 Solanum tuberosum HOM05D003562 ORTHO05D004074 3.0e-14 83.2 160 33.1
Solyc06g005930.3 Solanum lycopersicum HOM05D003562 ORTHO05D004074 5.2e-14 82.4 167 31.7
MBI18_g45417_MAGBIO Magnolia biondii HOM05D003562 ORTHO05D004074 6.8e-14 82.0 163 31.9
Solyc11g005230.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 8.8e-14 81.6 160 31.9
Sopen11g001240 Solanum pennellii HOM05D003562 ORTHO05D004074 8.8e-14 81.6 160 31.9
RcHm_v2.0_Chr7g0215511 Rosa chinensis HOM05D003562 ORTHO05D004074 2.6e-13 80.1 135 39.3
PGSC0003DMG400042505 Solanum tuberosum HOM05D003562 ORTHO05D004074 4.4e-13 79.3 160 31.9
HPP92_020796 Vanilla planifolia HOM05D003562 ORTHO05D004074 4.4e-13 79.3 213 29.6
Peaxi162Scf00125g00231 Petunia axillaris HOM05D003562 ORTHO05D004074 7.5e-13 78.6 160 30.6
SEGI_35747 Sequoiadendron giganteum HOM05D003562 ORTHO05D004074 9.8e-13 78.2 163 31.9
Cre10.g423700 Chlamydomonas reinhardtii HOM05D003562 ORTHO05D004074 1.3e-12 77.8 98 38.8
PGSC0003DMG400006063 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.3e-12 77.8 160 32.5
Nitab4.5_0004377g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.2e-12 77.0 146 32.2
Sopen11g001250 Solanum pennellii HOM05D003562 ORTHO05D004074 2.2e-12 77.0 156 32.7
Solyc11g005240.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 2.8e-12 76.6 160 31.9
CANSAT11G1241 Cannabis sativa HOM05D003562 ORTHO05D004074 6.3e-12 75.5 153 37.3
HPP92_020694 Vanilla planifolia HOM05D003562 ORTHO05D004074 1.4e-11 74.3 139 33.1
Nitab4.5_0002396g0050 Nicotiana tabacum HOM05D003562 ORTHO05D004074 3.1e-11 73.2 112 35.7
Peaxi162Scf00025g02824 Petunia axillaris HOM05D003562 ORTHO05D004074 3.1e-11 73.2 159 29.6
CDE12G0883 Ceratophyllum demersum HOM05D000824 ORTHO05D002221 1.6e-10 70.9 134 36.6
MCO01G099 Micromonas commoda HOM05D003562 ORTHO05D004074 6.6e-09 65.5 256 25.8
MCO01G583 Micromonas commoda HOM05D003562 ORTHO05D004074 6.6e-09 65.5 256 25.8
Nitab4.5_0002396g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.1e-08 64.7 140 30.0
AL6G10650 Arabidopsis lyrata HOM05D003562 ORTHO05D004074 6.8e-06 55.5 48 50.0


User provided reference genes

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