Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G187400 Gossypium raimondii HOM05D000216 ORTHO05D000634 3.5e-41 171.0 77 100.0
Gohir.D13G173125 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.3e-39 164.5 81 93.8
Gorai.005G167700 Gossypium raimondii HOM05D000216 ORTHO05D001131 5.6e-31 137.1 65 93.8
CAN.G2141.5 Capsicum annuum HOM05D000216 ORTHO05D000634 6.9e-29 130.2 65 87.7
CAN.G481.11 Capsicum annuum HOM05D000216 ORTHO05D000634 6.9e-29 130.2 65 87.7
MELO3C027102.2 Cucumis melo HOM05D000216 ORTHO05D000634 6.9e-29 130.2 65 87.7
PSO548G0054 Papaver somniferum HOM05D000216 ORTHO05D000634 6.9e-29 130.2 65 87.7
PGR111G0082 Punica granatum HOM05D000216 ORTHO05D000634 6.9e-29 130.2 65 87.7
Sed0020606 Sechium edule HOM05D000216 ORTHO05D000634 6.9e-29 130.2 65 87.7
Sed0024913 Sechium edule HOM05D000216 ORTHO05D000634 6.9e-29 130.2 65 87.7
Sed0025165 Sechium edule HOM05D000216 ORTHO05D000634 6.9e-29 130.2 65 87.7
Potri.013G140850 Populus trichocarpa HOM05D000216 ORTHO05D000634 9.0e-29 129.8 65 87.7
CSS0028306 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D000634 1.2e-28 129.4 65 86.2
ATCG00180 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 2.0e-28 128.6 65 86.2
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 2.0e-28 128.6 65 86.2
Nn082s42673 Nelumbo nucifera HOM05D000216 ORTHO05D000634 2.0e-28 128.6 65 86.2
LjContig00318g0019842 Lotus japonicus HOM05D000216 ORTHO05D000634 2.6e-28 128.3 65 86.2
BNapus_Darmor_BZH_scaffold_253p00070 Brassica napus HOM05D000216 ORTHO05D000634 4.5e-28 127.5 65 84.6
BolSC37t60766H Brassica oleracea HOM05D000216 ORTHO05D000634 4.5e-28 127.5 65 84.6
BolSC45t60875H Brassica oleracea HOM05D000216 ORTHO05D000634 4.5e-28 127.5 65 84.6
BolSC45t60939H Brassica oleracea HOM05D000216 ORTHO05D000634 4.5e-28 127.5 65 84.6
BraSC140t45586Z Brassica rapa HOM05D000216 ORTHO05D000634 4.5e-28 127.5 65 84.6
BraSC151t45702Z Brassica rapa HOM05D000216 ORTHO05D000634 4.5e-28 127.5 65 84.6
BraSC58t46407Z Brassica rapa HOM05D000216 ORTHO05D000634 4.5e-28 127.5 65 84.6
CARHR281930 Cardamine hirsuta HOM05D000216 ORTHO05D001131 4.5e-28 127.5 65 84.6
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 4.5e-28 127.5 65 84.6
Psat0s6357g0040 Pisum sativum HOM05D000216 ORTHO05D001131 1.0e-27 126.3 65 84.6
Psat7g026840 Pisum sativum HOM05D000216 ORTHO05D001131 1.0e-27 126.3 65 84.6
RcHm_v2.0_Chr2g0102161 Rosa chinensis HOM05D000216 ORTHO05D000634 1.0e-27 126.3 65 83.1
Atru.chr13.1918 Acer truncatum HOM05D000216 ORTHO05D000634 1.3e-27 125.9 65 83.1
BraSC140t45599Z Brassica rapa HOM05D000216 ORTHO05D000634 1.3e-27 125.9 65 83.1
Medtr3g062770 Medicago truncatula HOM05D000216 ORTHO05D000634 1.3e-27 125.9 65 83.1
Medtr3g062790 Medicago truncatula HOM05D000216 ORTHO05D000634 1.3e-27 125.9 65 83.1
Medtr4g051130 Medicago truncatula HOM05D000216 ORTHO05D001131 1.3e-27 125.9 65 83.1
DCAR_032475 Daucus carota HOM05D000216 ORTHO05D000634 1.7e-27 125.6 65 84.6
CAN.G219.18 Capsicum annuum HOM05D000216 ORTHO05D000634 2.9e-27 124.8 65 83.1
arahy.Tifrunner.gnm1.ann1.YJD706 Arachis hypogaea HOM05D000216 ORTHO05D000634 3.8e-27 124.4 66 84.8
Hund27655 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.9e-27 124.0 65 80.0
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.9e-27 124.0 65 80.0
Lalb_Chr09g0335401 Lupinus albus HOM05D000216 ORTHO05D000634 1.1e-26 122.9 65 81.5
HanXRQChr00c0823g0577611 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-26 121.7 64 82.8
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-26 121.7 64 82.8
HanXRQChr13g0417241 Helianthus annuus HOM05D000216 ORTHO05D001131 2.5e-26 121.7 64 82.8
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 2.5e-26 121.7 64 82.8
Lsat_1_v5_gn_1_96161 Lactuca sativa HOM05D000216 ORTHO05D000634 1.2e-25 119.4 64 81.2
Lsat_1_v5_gn_8_1820 Lactuca sativa HOM05D000216 ORTHO05D000634 1.2e-25 119.4 64 81.2
Potri.019G027860 Populus trichocarpa HOM05D000216 ORTHO05D000634 6.0e-25 117.1 60 86.7
LjContig00489g0016986 Lotus japonicus HOM05D000216 ORTHO05D000634 2.3e-24 115.2 60 85.0
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 8.7e-24 113.2 65 75.4
Solyc12g035870.3 Solanum lycopersicum HOM05D000216 ORTHO05D001131 8.7e-24 113.2 65 73.8
GSVIVG01000405001 Vitis vinifera HOM05D000216 ORTHO05D000634 1.1e-23 112.8 61 78.7
Gorai.009G384300 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.3e-22 109.4 65 75.4
BolSC44t60848H Brassica oleracea HOM05D000216 ORTHO05D000634 2.8e-22 108.2 56 83.9
Lalb_Chr24g0400921 Lupinus albus HOM05D000216 ORTHO05D000634 1.8e-21 105.5 64 75.0
Gorai.008G192200 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.2e-20 102.8 56 82.1
C02p28760 Brassica napus HOM05D000216 ORTHO05D000634 1.3e-19 99.4 56 73.2
Nitab4.5_0000172g0250 Nicotiana tabacum HOM05D000216 ORTHO05D001131 2.2e-19 98.6 65 70.8
Gohir.D12G179260 Gossypium hirsutum HOM05D000216 ORTHO05D000634 8.5e-19 96.7 56 78.6
Migut.K00995 Erythranthe guttata HOM05D000216 ORTHO05D000634 5.5e-18 94.0 67 65.7
Mapoly0093s0044 Marchantia polymorpha HOM05D000216 ORTHO05D000634 7.2e-18 93.6 65 63.1
Mapoly0093s0045 Marchantia polymorpha HOM05D000216 ORTHO05D000634 7.2e-18 93.6 65 63.1
Migut.D01416 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 88.9
FAN17G2339 Fragaria x ananassa HOM05D000216 ORTHO05D000634 1.3e-16 89.4 53 79.2
arahy.Tifrunner.gnm1.ann1.ITK2CB Arachis hypogaea HOM05D000388 ORTHO05D000473 2.5e-15 85.1 48 79.2
Lsat_1_v5_gn_1_118640 Lactuca sativa HOM05D000216 ORTHO05D000634 2.2e-14 82.0 43 81.4
Solyc01g017370.2 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.8e-14 81.6 47 74.5
CARHR181340 Cardamine hirsuta HOM05D000216 ORTHO05D000634 1.2e-09 66.2 34 79.4
BolC7t41733H Brassica oleracea HOM05D000216 ORTHO05D000634 3.6e-09 64.7 32 84.4
BolSC49t61197H Brassica oleracea HOM05D000216 ORTHO05D000634 3.6e-09 64.7 32 84.4
Pp3c19_12990 Physcomitrium patens HOM05D000216 ORTHO05D000634 3.6e-09 64.7 60 51.7
SMO168G0002 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 3.6e-09 64.7 67 43.3
SMO086G0006 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 7.9e-09 63.5 50 52.0
Hund21335 Selenicereus undatus HOM05D000216 ORTHO05D000634 8.8e-08 60.1 32 78.1
Solyc07g021205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 8.8e-08 60.1 32 75.0
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 9.7e-07 56.6 28 82.1
Solyc12g062563.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 9.7e-07 56.6 32 71.9
Solyc07g021200.1 Solanum lycopersicum HOM05D001133 ORTHO05D000941 2.8e-06 55.1 29 79.3
Solyc12g062560.1 Solanum lycopersicum HOM05D001133 ORTHO05D000941 2.8e-06 55.1 29 79.3
Oeu062866.1 Olea europaea HOM05D000216 ORTHO05D000634 3.7e-06 54.7 29 79.3


User provided reference genes

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