Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G171000 Gossypium raimondii HOM05D038555 ORTHO05D005364 1.7e-31 138.7 69 100.0
Gohir.D03G104900 Gossypium hirsutum HOM05D037159 ORTHO05D005364 9.9e-19 96.3 47 97.9
Gorai.010G176300 Gossypium raimondii HOM05D003868 ORTHO05D036083 1.6e-16 89.0 45 91.1
Gorai.002G154800 Gossypium raimondii HOM05D038584 ORTHO05D047465 2.5e-14 81.6 41 95.1
Gorai.003G093700 Gossypium raimondii HOM05D037159 ORTHO05D048125 1.5e-11 72.4 37 94.6
Gohir.D07G182750 Gossypium hirsutum HOM05D003868 ORTHO05D036083 2.0e-11 72.0 39 84.6
Gorai.003G110900 Gossypium raimondii HOM05D022939 ORTHO05D036108 2.6e-11 71.6 34 100.0
Gohir.A10G176900 Gossypium hirsutum HOM05D003868 ORTHO05D005364 7.6e-11 70.1 33 100.0
Gohir.D10G183600 Gossypium hirsutum HOM05D003868 ORTHO05D005364 7.6e-11 70.1 33 100.0
Gorai.011G205800 Gossypium raimondii HOM05D003868 ORTHO05D005364 7.6e-11 70.1 33 100.0
Duzib128G0320 Durio zibethinus HOM05D003868 ORTHO05D005364 1.7e-10 68.9 33 97.0
Thecc.05G330900 Theobroma cacao HOM05D003868 ORTHO05D005364 1.7e-10 68.9 33 97.0
COL.COLO4_28215 Corchorus olitorius HOM05D003868 ORTHO05D005364 4.9e-10 67.4 33 93.9
Haze_15009 Corylus avellana HOM05D003868 ORTHO05D005364 6.4e-10 67.0 35 88.6
Eucgr.H01340 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.4e-09 65.9 32 93.8
SGA_v2.0_scaffold464G51994 Striga asiatica HOM05D003868 ORTHO05D005364 1.4e-09 65.9 34 88.2
VMungo0720G2099 Vigna mungo HOM05D003868 ORTHO05D005364 1.9e-09 65.5 33 90.9
Ciclev10028527m.g Citrus clementina HOM05D003868 ORTHO05D005364 2.4e-09 65.1 33 90.9
Hund04404 Selenicereus undatus HOM05D003868 ORTHO05D005364 2.4e-09 65.1 33 90.9
Gohir.D04G090365 Gossypium hirsutum HOM05D038555 ORTHO05D048014 3.2e-09 64.7 38 84.2
Gorai.012G101300 Gossypium raimondii HOM05D038555 ORTHO05D048014 3.2e-09 64.7 38 84.2
AUR62003554 Chenopodium quinoa HOM05D003868 ORTHO05D005364 4.2e-09 64.3 34 88.2
AUR62017868 Chenopodium quinoa HOM05D003868 ORTHO05D005364 4.2e-09 64.3 34 88.2
Rhsim05G0124800 Rhododendron simsii HOM05D003868 ORTHO05D005364 4.2e-09 64.3 33 87.9
vmacro19799 Vaccinium macrocarpon HOM05D003868 ORTHO05D005364 4.2e-09 64.3 33 87.9
EL10Ac6g15321 Beta vulgaris HOM05D003868 ORTHO05D005364 5.4e-09 63.9 33 87.9
MELO3C015225.2 Cucumis melo HOM05D003868 ORTHO05D005364 5.4e-09 63.9 35 85.7
CsaV3_1G038240 Cucumis sativus L. HOM05D003868 ORTHO05D005364 5.4e-09 63.9 35 85.7
Glyma.10G141800 Glycine max HOM05D003868 ORTHO05D005364 5.4e-09 63.9 33 87.9
Glyma.20G090300 Glycine max HOM05D003868 ORTHO05D005364 5.4e-09 63.9 33 87.9
Phvul.007G206500 Phaseolus vulgaris HOM05D003868 ORTHO05D005364 5.4e-09 63.9 33 87.9
Sed0020210 Sechium edule HOM05D003868 ORTHO05D005364 5.4e-09 63.9 35 85.7
Sc07g0001850 Simmondsia chinensis HOM05D003868 ORTHO05D005364 5.4e-09 63.9 33 87.9
TWI12G0833 Tripterygium wilfordii HOM05D003868 ORTHO05D005364 5.4e-09 63.9 33 90.9
Cpa.g.sc48.229 Carica papaya HOM05D003868 ORTHO05D005364 7.1e-09 63.5 33 87.9
CiPaw.02G000700 Carya illinoinensis HOM05D003868 ORTHO05D005364 7.1e-09 63.5 33 87.9
Cc02_g36030 Coffea canephora HOM05D003868 ORTHO05D005364 7.1e-09 63.5 33 87.9
Atru.chr12.1514 Acer truncatum HOM05D003868 ORTHO05D005364 9.3e-09 63.2 33 87.9
Migut.K00044 Erythranthe guttata HOM05D003868 ORTHO05D005364 9.3e-09 63.2 33 84.8
THA.LOC104818763 Tarenaya hassleriana HOM05D003868 ORTHO05D005364 9.3e-09 63.2 35 85.7
Aqoxy5G02863 Aquilegia oxysepala HOM05D003868 ORTHO05D005364 1.2e-08 62.8 34 85.3
MSTRG.20351 Avicennia marina HOM05D003868 ORTHO05D005364 1.2e-08 62.8 33 84.8
Prupe.6G302900 Prunus persica HOM05D003868 ORTHO05D005364 1.2e-08 62.8 35 85.7
PGR031G0514 Punica granatum HOM05D003868 ORTHO05D005364 1.2e-08 62.8 32 87.5
ClCG03G017940 Citrullus lanatus HOM05D003868 ORTHO05D005364 1.6e-08 62.4 35 82.9
Dinv30957 Davidia involucrata HOM05D003868 ORTHO05D005364 1.6e-08 62.4 33 84.8
Potri.013G000700 Populus trichocarpa HOM05D003868 ORTHO05D005364 1.6e-08 62.4 33 87.9
SalBow1G5269 Salvia bowleyana HOM05D003868 ORTHO05D005364 1.6e-08 62.4 32 90.6
SalBow1G5332 Salvia bowleyana HOM05D003868 ORTHO05D005364 1.6e-08 62.4 32 90.6
GSVIVG01031344001 Vitis vinifera HOM05D003868 ORTHO05D005364 1.6e-08 62.4 33 84.8
CSS0017748 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 2.7e-08 61.6 33 84.8
Manes.08G106600 Manihot esculenta HOM05D003868 ORTHO05D005364 2.7e-08 61.6 33 84.8
Sabra13G0000600 Salix brachista HOM05D003868 ORTHO05D005364 4.6e-08 60.8 33 84.8
TAR633G1950 Trochodendron aralioides HOM05D003868 ORTHO05D005364 4.6e-08 60.8 33 84.8
Actinidia11698 Actinidia chinensis HOM05D003868 ORTHO05D005364 6.0e-08 60.5 33 81.8
Nn4g25324 Nelumbo nucifera HOM05D003868 ORTHO05D005364 6.0e-08 60.5 33 84.8
PSO170G4013 Papaver somniferum HOM05D003868 ORTHO05D005364 6.0e-08 60.5 33 84.8
PSO357G0419 Papaver somniferum HOM05D003868 ORTHO05D005364 6.0e-08 60.5 33 84.8
TWI56G0733 Tripterygium wilfordii HOM05D003868 ORTHO05D005364 6.0e-08 60.5 33 84.8
Zm00001eb294290 Zea mays HOM05D003868 ORTHO05D005364 6.0e-08 60.5 35 80.0
Lj5g0001875 Lotus japonicus HOM05D003868 ORTHO05D005364 7.9e-08 60.1 33 81.8
Manes.09G182200 Manihot esculenta HOM05D003868 ORTHO05D005364 7.9e-08 60.1 33 81.8
TAR362G1038 Trochodendron aralioides HOM05D003868 ORTHO05D005364 7.9e-08 60.1 33 81.8
CSS0027931 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 1.0e-07 59.7 34 79.4
CSS0029807 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 1.0e-07 59.7 34 79.4
CARHR186910 Cardamine hirsuta HOM05D003868 ORTHO05D005364 1.0e-07 59.7 33 81.8
MD04G1184400 Malus domestica HOM05D003868 ORTHO05D005364 1.0e-07 59.7 33 81.8
Os05g0540100 Oryza sativa ssp. japonica HOM05D003868 ORTHO05D005364 1.0e-07 59.7 33 81.8
Gohir.D13G117100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 1.3e-07 59.3 33 81.8
Lj5C315T22 Lonicera japonica HOM05D003868 ORTHO05D005364 1.3e-07 59.3 33 81.8
Lalb_Chr02g0147421 Lupinus albus HOM05D003868 ORTHO05D005364 1.3e-07 59.3 33 84.8
Lalb_Chr06g0167231 Lupinus albus HOM05D003868 ORTHO05D005364 1.8e-07 58.9 33 81.8
Aa31LG11G9990 Aethionema arabicum HOM05D003868 ORTHO05D005364 2.3e-07 58.5 33 81.8
CAN.G1248.3 Capsicum annuum HOM05D003868 ORTHO05D005364 2.3e-07 58.5 32 81.2
CDE09G0829 Ceratophyllum demersum HOM05D003868 ORTHO05D005364 2.3e-07 58.5 38 71.1
Nitab4.5_0000541g0020 Nicotiana tabacum HOM05D003868 ORTHO05D005364 2.3e-07 58.5 32 81.2
PGR083G0274 Punica granatum HOM05D003868 ORTHO05D005364 2.3e-07 58.5 33 78.8
Solyc01g102370.4 Solanum lycopersicum HOM05D003868 ORTHO05D005364 2.3e-07 58.5 32 81.2
Sopen01g044820 Solanum pennellii HOM05D003868 ORTHO05D005364 2.3e-07 58.5 32 81.2
HPP92_017212 Vanilla planifolia HOM05D003868 ORTHO05D005364 3.0e-07 58.2 33 81.8
BcaB04g19723 Brassica carinata HOM05D003868 ORTHO05D005364 5.1e-07 57.4 33 78.8
A06p36880 Brassica napus HOM05D003868 ORTHO05D005364 5.1e-07 57.4 33 78.8
C07p41620 Brassica napus HOM05D003868 ORTHO05D005364 5.1e-07 57.4 33 78.8
BolC7t44696H Brassica oleracea HOM05D003868 ORTHO05D005364 5.1e-07 57.4 33 78.8
BraA06t26613Z Brassica rapa HOM05D003868 ORTHO05D005364 5.1e-07 57.4 33 78.8
Lsat_1_v5_gn_7_23500 Lactuca sativa HOM05D003868 ORTHO05D005364 5.1e-07 57.4 33 78.8
Nitab4.5_0003511g0030 Nicotiana tabacum HOM05D003868 ORTHO05D005364 5.1e-07 57.4 32 78.1
Sp2g21320 Schrenkiella parvula HOM05D003868 ORTHO05D005364 5.1e-07 57.4 33 78.8
AL6G38510 Arabidopsis lyrata HOM05D003868 ORTHO05D005364 6.7e-07 57.0 33 78.8
AT5G26680 Arabidopsis thaliana HOM05D003868 ORTHO05D005364 6.7e-07 57.0 33 78.8
Carub.0006s2428 Capsella rubella HOM05D003868 ORTHO05D005364 6.7e-07 57.0 33 78.8
Ca_10214_v3 Cicer arietinum L. HOM05D003868 ORTHO05D005364 6.7e-07 57.0 33 78.8
Thhalv10004386m.g Eutrema salsugineum HOM05D003868 ORTHO05D005364 6.7e-07 57.0 33 78.8
DCAR_029304 Daucus carota HOM05D003868 ORTHO05D005364 8.7e-07 56.6 33 78.8
Migut.N00980 Erythranthe guttata HOM05D003868 ORTHO05D005364 8.7e-07 56.6 33 75.8
BcaC03g17876 Brassica carinata HOM05D003868 ORTHO05D005364 1.1e-06 56.2 33 75.8
FvH4_6g08670 Fragaria vesca HOM05D003868 ORTHO05D005364 1.1e-06 56.2 33 75.8
FAN02G3718 Fragaria x ananassa HOM05D003868 ORTHO05D005364 1.1e-06 56.2 33 75.8
FAN09G4770 Fragaria x ananassa HOM05D003868 ORTHO05D005364 1.1e-06 56.2 33 75.8
HanXRQChr04g0116761 Helianthus annuus HOM05D003868 ORTHO05D005364 1.1e-06 56.2 33 78.8
AagrBONN_evm.TU.Sc2ySwM_344.2826 Anthoceros agrestis HOM05D003868 ORTHO05D005364 1.5e-06 55.8 32 71.9
ECA236G4503 Erigeron canadensis HOM05D003868 ORTHO05D005364 1.5e-06 55.8 33 78.8
Eucgr.B01348 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.5e-06 55.8 33 78.8
Gohir.A13G114100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 1.5e-06 55.8 33 75.8
Gorai.013G131700 Gossypium raimondii HOM05D003868 ORTHO05D005364 1.5e-06 55.8 33 78.8
RcHm_v2.0_Chr3g0458811 Rosa chinensis HOM05D003868 ORTHO05D005364 1.5e-06 55.8 33 75.8
ATR0693G183 Amborella trichopoda HOM05D003868 ORTHO05D005364 2.5e-06 55.1 33 75.8
SalBow4G0333 Salvia bowleyana HOM05D003868 ORTHO05D005364 2.5e-06 55.1 33 75.8
SHI18007 Sapria himalayana HOM05D003868 ORTHO05D005364 2.5e-06 55.1 35 74.3
Eucgr.B01326 Eucalyptus grandis HOM05D003868 ORTHO05D005364 3.3e-06 54.7 34 73.5
FAN05G2124 Fragaria x ananassa HOM05D003868 ORTHO05D005364 3.3e-06 54.7 33 72.7
SEGI_17973 Sequoiadendron giganteum HOM05D003868 ORTHO05D005364 3.3e-06 54.7 34 70.6
PSO761G0576 Papaver somniferum HOM05D003868 ORTHO05D005364 5.6e-06 53.9 32 78.1
Pp3c11_1310 Physcomitrium patens HOM05D003868 ORTHO05D005364 5.6e-06 53.9 32 75.0
MSTRG.5173 Avicennia marina HOM05D003868 ORTHO05D005364 7.4e-06 53.5 33 72.7
Eucgr.B01328 Eucalyptus grandis HOM05D003868 ORTHO05D005364 7.4e-06 53.5 29 82.8
Eucgr.B01834 Eucalyptus grandis HOM05D003868 ORTHO05D005364 7.4e-06 53.5 33 75.8
Gohir.D01G123901 Gossypium hirsutum HOM05D038584 ORTHO05D047465 7.4e-06 53.5 28 89.3
PSO210G0203 Papaver somniferum HOM05D003868 ORTHO05D005364 7.4e-06 53.5 33 75.8


User provided reference genes

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