Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 9.5e-234 813.1 414 100.0
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 4.4e-223 777.7 414 95.9
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 5.8e-223 777.3 409 96.6
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.5e-215 752.7 414 92.8
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 5.3e-208 727.6 414 88.9
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.6e-207 725.3 371 99.5
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 3.8e-206 721.5 414 87.9
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 4.9e-206 721.1 375 97.6
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 1.1e-205 719.9 414 88.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 3.5e-204 714.9 414 88.2
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 4.6e-204 714.5 414 87.9
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 6.6e-203 710.7 414 88.2
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.1e-202 709.9 414 86.2
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.5e-202 709.5 416 87.7
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 3.3e-202 708.4 414 86.5
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 4.3e-202 708.0 414 86.5
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 4.3e-202 708.0 414 86.2
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 5.6e-202 707.6 414 86.2
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 7.3e-202 707.2 414 86.0
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 7.3e-202 707.2 414 86.0
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 9.6e-202 706.8 414 86.7
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 9.6e-202 706.8 413 85.2
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 9.6e-202 706.8 414 86.7
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 3.6e-201 704.9 414 85.7
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.6e-201 704.9 414 85.7
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 8.1e-201 703.7 414 85.5
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 8.1e-201 703.7 414 85.5
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 8.1e-201 703.7 414 86.5
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.8e-200 702.6 414 85.0
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 2.4e-200 702.2 414 85.3
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 6.9e-200 700.7 413 85.5
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 6.9e-200 700.7 445 81.3
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 7.6e-199 697.2 413 85.2
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 9.9e-199 696.8 411 86.4
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-198 696.4 414 84.1
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.3e-198 696.4 414 85.7
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.7e-198 696.0 414 83.8
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.2e-198 695.7 412 85.4
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-197 693.3 426 83.6
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.1e-197 693.3 426 83.6
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.4e-197 693.0 413 85.5
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-197 692.6 426 83.3
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 3.2e-197 691.8 414 84.3
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 5.4e-197 691.0 413 84.7
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.4e-197 691.0 414 83.3
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 5.4e-197 691.0 414 84.5
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 5.4e-197 691.0 414 83.8
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 7.1e-197 690.6 414 83.8
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 7.1e-197 690.6 414 84.5
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 7.1e-197 690.6 409 84.1
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 9.3e-197 690.3 414 84.3
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.2e-196 689.9 414 83.3
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.2e-196 689.9 414 84.5
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.1e-196 689.1 414 83.6
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 6.0e-196 687.6 414 84.3
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 7.9e-196 687.2 409 85.8
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 7.9e-196 687.2 413 83.5
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 1.0e-195 686.8 414 84.1
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.3e-195 686.4 414 83.6
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 3.0e-195 685.3 410 84.4
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 3.9e-195 684.9 414 83.8
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 5.1e-195 684.5 412 83.7
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.5e-194 682.9 413 82.3
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.9e-194 682.6 414 82.6
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 4.3e-194 681.4 413 84.3
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 9.6e-194 680.2 413 83.8
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 3.7e-193 678.3 414 82.4
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 3.7e-193 678.3 414 82.4
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.1e-192 676.8 411 82.5
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.1e-192 676.8 413 82.6
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.4e-192 676.4 414 83.1
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.8e-192 676.0 413 81.8
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 4.0e-192 674.9 415 82.7
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 4.0e-192 674.9 414 82.1
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 6.9e-192 674.1 410 82.9
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 9.0e-192 673.7 413 81.6
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 4.5e-191 671.4 416 82.9
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 6.5e-190 667.5 414 82.1
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 4.2e-189 664.8 420 80.7
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.0e-187 660.2 420 79.8
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 5.1e-187 657.9 410 82.9
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 9.6e-186 653.7 415 80.7
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 3.1e-184 648.7 411 80.3
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 6.9e-184 647.5 416 79.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.0e-182 643.7 429 77.2
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 6.5e-182 641.0 438 75.6
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.9e-178 629.4 415 76.6
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 2.5e-178 629.0 414 79.2
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 7.4e-178 627.5 415 76.6
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.6e-177 626.3 415 76.1
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 5.3e-176 621.3 413 73.1
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 7.2e-173 610.9 406 78.1
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 2.3e-171 605.9 412 76.7
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.0e-171 605.5 410 77.1
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 8.2e-169 597.4 414 74.4
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 4.5e-167 591.7 418 73.7
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.6e-164 583.2 410 71.2
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 2.3e-163 579.3 371 81.4
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 7.0e-160 567.8 323 88.9
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 9.1e-160 567.4 410 68.8
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 3.6e-156 555.4 485 64.5
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.1e-152 543.9 411 70.6
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.9e-149 533.1 398 66.3
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 4.4e-146 521.9 405 62.7
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 9.8e-146 520.8 412 63.6
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 4.1e-144 515.4 303 85.1
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 2.3e-139 499.6 296 84.1
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.0e-139 499.2 281 88.3
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.0e-138 496.5 281 87.9
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 5.4e-128 461.8 257 90.3
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-120 436.8 313 72.5
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.9e-117 426.8 256 82.0
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 7.3e-117 424.9 314 70.4
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.4e-114 416.0 285 73.7
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 6.2e-108 395.2 284 72.2
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-104 383.6 292 71.9
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 6.9e-99 365.2 402 48.5
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.1e-87 327.0 191 86.9
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.6e-84 317.4 205 79.0
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.4e-81 305.4 238 66.8
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 8.7e-78 295.0 184 77.7
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.0e-73 281.6 173 80.9
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.1e-72 275.4 199 70.9
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.0e-67 258.5 204 68.1
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 1.4e-64 251.1 398 38.4
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 2.8e-60 236.9 220 59.1
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.2e-57 227.3 131 86.3
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 3.2e-56 223.4 406 33.7
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.2e-56 222.2 199 65.8
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.4e-54 218.0 321 36.8
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 9.1e-51 205.3 121 81.8
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.0e-50 204.1 126 80.2
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-49 201.1 161 68.9
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.4e-48 195.3 177 62.1
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 4.8e-44 183.0 102 87.3
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.0e-42 177.6 114 77.2
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.4e-38 164.9 414 31.9
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.8e-36 157.1 83 90.4
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.3e-33 148.3 107 66.4
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.2e-32 143.7 80 85.0
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.2e-26 125.2 115 60.0
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 2.0e-18 97.8 99 55.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.5e-18 97.1 51 90.2
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 5.9e-18 96.3 153 40.5
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 6.6e-17 92.8 127 50.4
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 8.6e-17 92.4 179 40.8
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 3.0e-14 84.0 146 43.8
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.2e-14 83.2 71 64.8
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.2e-13 82.0 59 79.7
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.6e-13 80.9 50 80.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-11 75.5 55 70.9
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 5.9e-10 69.7 81 49.4
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.1e-08 65.5 40 80.0


User provided reference genes

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