Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 0.0e+00 3333.9 1707 100.0
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 0.0e+00 3274.2 1707 98.4
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 0.0e+00 3121.6 1707 94.8
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 0.0e+00 2201.8 1721 69.4
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 0.0e+00 1950.3 1725 63.2
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 0.0e+00 1923.3 1723 62.4
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 0.0e+00 1369.4 1741 47.0
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 0.0e+00 1343.6 1743 46.6
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 0.0e+00 1340.1 1559 49.5
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 0.0e+00 1307.7 1746 46.0
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 0.0e+00 1196.8 1773 43.4
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 0.0e+00 1150.2 1686 43.5
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 0.0e+00 1126.7 1498 46.2
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 0.0e+00 1120.5 1750 41.7
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 2.3e-311 1072.8 1673 42.0
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 9.5e-304 1047.7 1747 39.8
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 4.3e-296 1022.3 1717 40.1
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 6.6e-289 998.4 1771 38.9
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 1.1e-288 997.7 1760 40.0
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 9.8e-285 984.6 1732 38.6
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 3.2e-283 979.5 1703 39.0
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 2.3e-281 973.4 1762 38.8
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 5.6e-280 968.8 1691 39.0
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 1.7e-273 947.2 1620 39.3
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 3.3e-272 943.0 1699 38.2
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 2.8e-271 939.9 1755 36.9
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 2.0e-269 933.7 1708 38.6
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 5.6e-264 915.6 1766 36.8
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 4.9e-260 902.5 1758 37.5
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 1.7e-257 894.0 1773 36.8
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 3.9e-257 892.9 1777 37.5
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 1.3e-255 887.9 1768 37.5
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 1.6e-255 887.5 1758 37.1
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 3.6e-255 886.3 1760 37.0
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 5.8e-253 879.0 1746 37.5
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 3.2e-251 873.2 1753 36.6
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 4.6e-250 869.4 1790 36.5
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 6.0e-250 869.0 1760 37.0
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 2.3e-249 867.1 1753 35.9
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 1.5e-248 864.4 1747 37.9
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 3.7e-247 859.8 1765 36.4
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 1.2e-245 854.7 1754 36.3
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 2.0e-245 854.0 1753 36.7
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.7e-244 850.9 1072 48.2
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 1.7e-244 850.9 1776 35.6
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 2.9e-244 850.1 1761 36.2
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.9e-243 847.4 1073 48.0
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 1.2e-242 844.7 1750 35.8
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 1.3e-241 841.3 1749 36.0
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.5e-240 837.8 1750 35.4
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 1.3e-239 834.7 1722 35.5
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 1.6e-239 834.3 1757 36.0
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 3.8e-236 823.2 1812 35.0
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 4.2e-235 819.7 1814 35.2
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 5.3e-230 802.7 1756 35.4
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 6.9e-230 802.4 1768 34.6
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 5.0e-228 796.2 1563 37.2
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 2.5e-224 783.9 1754 36.0
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 6.5e-220 769.2 1507 36.0
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 1.1e-216 758.4 1747 35.0
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 2.2e-212 744.2 1595 35.9
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.2e-211 740.0 1742 34.1
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 2.7e-210 737.3 1795 33.9
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.6e-208 730.7 1745 34.2
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.7e-208 729.6 1795 33.5
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 9.1e-206 722.2 1745 34.6
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.2e-204 717.6 1745 34.3
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 3.8e-204 716.8 1783 32.9
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 9.7e-200 702.2 1735 32.8
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 4.2e-195 686.8 1748 34.3
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 3.0e-193 680.6 759 54.2
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 5.4e-190 669.8 1764 32.1
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 9.8e-184 649.0 1264 36.2
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 7.3e-171 606.3 719 51.7
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 4.6e-165 587.0 1190 34.4
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 1.1e-163 582.4 799 48.2
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 6.2e-162 576.6 796 42.2
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 7.1e-158 563.1 1515 30.8
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.9e-147 528.5 1361 33.5
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 5.3e-145 520.4 1730 27.6
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 5.3e-145 520.4 1731 27.7
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 6.6e-140 503.4 1750 29.4
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 1.9e-131 475.3 1820 28.4
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 2.5e-131 474.9 961 37.4
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 1.3e-130 472.6 1785 28.5
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 1.4e-129 469.2 1787 28.5
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 3.1e-129 468.0 1738 28.1
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 6.9e-129 466.8 1509 29.0
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 1.5e-128 465.7 1513 29.1
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 3.4e-128 464.5 1815 28.5
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 1.9e-126 458.8 1771 28.2
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 3.8e-119 434.5 1692 28.1
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 5.0e-119 434.1 1736 27.7
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 2.7e-117 428.3 1617 27.8
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 4.6e-117 427.6 639 43.8
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 7.4e-115 420.2 1527 28.6
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 1.6e-114 419.1 788 38.7
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 9.7e-107 393.3 652 42.0
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 1.0e-103 383.3 641 38.1
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.3e-90 337.4 496 44.4
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 7.7e-88 330.5 635 38.1
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 4.7e-85 321.2 793 34.0
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 3.2e-57 228.8 464 35.8
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 1.2e-56 226.9 507 37.1
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 6.6e-55 221.1 969 25.3
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 1.9e-54 219.5 566 35.2
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 3.4e-43 182.2 147 65.3
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 3.2e-41 175.6 499 32.5
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 1.6e-40 173.3 216 45.8
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 3.0e-39 169.1 235 40.4
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 3.8e-34 152.1 296 37.8
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 3.9e-31 142.1 228 36.4
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 6.6e-31 141.4 109 62.4
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 1.7e-26 126.7 294 31.6
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 9.3e-25 120.9 209 37.3
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 4.3e-22 112.1 206 38.3
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 1.3e-21 110.5 722 21.2
COL.COLO4_31594 Corchorus olitorius HOM05D005579 ORTHO05D006775 1.7e-18 100.1 107 56.1
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 6.0e-16 91.7 210 35.7
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 1.0e-15 90.9 164 42.7
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 6.7e-15 88.2 270 28.5
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.8e-10 72.4 191 34.0
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 7.1e-09 68.2 163 30.1
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.2e-08 67.4 98 43.9
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 3.5e-08 65.9 144 30.6
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 7.9e-08 64.7 121 39.7
Lalb_Chr19g0130841 Lupinus albus HOM05D005579 ORTHO05D006775 5.1e-07 62.0 98 44.9
PSO339G5948 Papaver somniferum HOM05D007489 ORTHO05D008037 5.1e-07 62.0 206 29.6
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.7e-07 61.6 99 41.4


User provided reference genes

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