Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G269400 Gossypium raimondii HOM05D001392 ORTHO05D006407 4.4e-32 140.6 67 100.0
Gohir.A08G253800 Gossypium hirsutum HOM05D001392 ORTHO05D006407 1.1e-11 72.8 33 97.0
Gohir.D07G000800 Gossypium hirsutum HOM05D001392 ORTHO05D014312 2.5e-11 71.6 75 53.3
Gohir.A12G276975 Gossypium hirsutum HOM05D001392 ORTHO05D014312 3.3e-11 71.2 75 53.3
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 3.3e-11 71.2 75 53.3
Gohir.D01G222000 Gossypium hirsutum HOM05D001392 ORTHO05D006407 5.6e-11 70.5 32 96.9
Gorai.002G268700 Gossypium raimondii HOM05D001392 ORTHO05D006407 5.6e-11 70.5 32 96.9
Gohir.D10G255000 Gossypium hirsutum HOM05D001392 ORTHO05D006407 9.6e-11 69.7 75 52.0
Gorai.011G296000 Gossypium raimondii HOM05D001392 ORTHO05D006407 9.6e-11 69.7 75 52.0
Gohir.A10G243050 Gossypium hirsutum HOM05D001392 ORTHO05D006407 1.6e-10 68.9 32 93.8
Dinv19030 Davidia involucrata HOM05D001392 ORTHO05D006407 1.4e-09 65.9 75 49.3
Eucgr.F02848 Eucalyptus grandis HOM05D001392 ORTHO05D006407 1.8e-09 65.5 75 48.0
Actinidia35731 Actinidia chinensis HOM05D001392 ORTHO05D006407 3.1e-09 64.7 75 49.3
Hma1.2p1_0524F.1_g172350 Hydrangea macrophylla HOM05D001392 ORTHO05D006407 3.1e-09 64.7 75 46.7
Rhsim08G0018500 Rhododendron simsii HOM05D001392 ORTHO05D006407 3.1e-09 64.7 75 49.3
vmacro18535 Vaccinium macrocarpon HOM05D001392 ORTHO05D006407 1.2e-08 62.8 32 81.2
ClCG05G011510 Citrullus lanatus HOM05D001392 ORTHO05D006407 2.0e-08 62.0 46 56.5
Duzib133G1570 Durio zibethinus HOM05D001392 ORTHO05D006407 2.0e-08 62.0 32 84.4
Thecc.04G116700 Theobroma cacao HOM05D001392 ORTHO05D006407 2.0e-08 62.0 32 81.2
TAR623G1183 Trochodendron aralioides HOM05D001392 ORTHO05D006407 2.6e-08 61.6 74 48.6
COL.COLO4_09038 Corchorus olitorius HOM05D001392 ORTHO05D006407 3.4e-08 61.2 32 81.2
GSVIVG01027222001 Vitis vinifera HOM05D001392 ORTHO05D006407 3.4e-08 61.2 71 47.9
GSVIVG01030775001 Vitis vinifera HOM05D001392 ORTHO05D006407 3.4e-08 61.2 71 47.9
CANSAT71G0007 Cannabis sativa HOM05D001392 ORTHO05D006407 4.5e-08 60.8 75 44.0
Lj4A264G50 Lonicera japonica HOM05D001392 ORTHO05D006407 4.5e-08 60.8 75 46.7
PSO339G4038 Papaver somniferum HOM05D001392 ORTHO05D006407 4.5e-08 60.8 75 46.7
Ciclev10010998m.g Citrus clementina HOM05D001392 ORTHO05D006407 5.8e-08 60.5 32 81.2
DCAR_003434 Daucus carota HOM05D001392 ORTHO05D006407 5.8e-08 60.5 44 59.1
PSO384G0294 Papaver somniferum HOM05D001392 ORTHO05D006407 5.8e-08 60.5 32 78.1
RcHm_v2.0_Chr1g0328051 Rosa chinensis HOM05D001392 ORTHO05D006407 5.8e-08 60.5 32 78.1
HPP92_000859 Vanilla planifolia HOM05D001392 ORTHO05D006407 5.8e-08 60.5 31 83.9
Atru.chr1.1875 Acer truncatum HOM05D001392 ORTHO05D006407 7.6e-08 60.1 75 44.0
MSTRG.4620 Avicennia marina HOM05D001392 ORTHO05D006407 7.6e-08 60.1 75 46.7
CSS0004873 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D006407 7.6e-08 60.1 32 78.1
CSS0005968 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D006407 7.6e-08 60.1 32 78.1
Cfa017719 Carpinus fangiana HOM05D001392 ORTHO05D006407 7.6e-08 60.1 32 78.1
Migut.D01299 Erythranthe guttata HOM05D001392 ORTHO05D006407 7.6e-08 60.1 32 81.2
QL07p019084 Quercus lobata HOM05D001392 ORTHO05D006407 7.6e-08 60.1 75 44.0
TWI74G1301 Tripterygium wilfordii HOM05D001392 ORTHO05D006407 7.6e-08 60.1 32 78.1
Haze_20419 Corylus avellana HOM05D001392 ORTHO05D006407 1.0e-07 59.7 32 78.1
SalBow5G1075 Salvia bowleyana HOM05D001392 ORTHO05D006407 1.0e-07 59.7 32 81.2
Hund13115 Selenicereus undatus HOM05D001392 ORTHO05D006407 1.0e-07 59.7 75 46.7
Manes.02G076200 Manihot esculenta HOM05D001392 ORTHO05D006407 1.3e-07 59.3 32 78.1
PGR004G0453 Punica granatum HOM05D001392 ORTHO05D006407 1.3e-07 59.3 32 75.0
SGA_v2.0_scaffold40G15632 Striga asiatica HOM05D001392 ORTHO05D006407 1.3e-07 59.3 75 48.0
Aa31LG11G12960 Aethionema arabicum HOM05D001392 ORTHO05D006407 1.7e-07 58.9 32 78.1
CAN.G207.6 Capsicum annuum HOM05D001392 ORTHO05D006407 1.7e-07 58.9 32 78.1
AUR62018211 Chenopodium quinoa HOM05D001392 ORTHO05D006407 1.7e-07 58.9 75 46.7
Potri.017G124500 Populus trichocarpa HOM05D001392 ORTHO05D006407 1.7e-07 58.9 32 78.1
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 1.7e-07 58.9 32 78.1
FvH4_7g04130 Fragaria vesca HOM05D001392 ORTHO05D006407 2.2e-07 58.5 32 75.0
FAN03G0802 Fragaria x ananassa HOM05D001392 ORTHO05D006407 2.2e-07 58.5 32 75.0
FAN03G1326 Fragaria x ananassa HOM05D001392 ORTHO05D006407 2.2e-07 58.5 32 75.0
MD05G1034800 Malus domestica HOM05D001392 ORTHO05D006407 2.2e-07 58.5 32 75.0
MD09G1264400 Malus domestica HOM05D001392 ORTHO05D006407 2.2e-07 58.5 32 75.0
Sc14g0006490 Simmondsia chinensis HOM05D001392 ORTHO05D006407 2.2e-07 58.5 32 78.1
Ah.12g060150 Amaranthus hybridus HOM05D001392 ORTHO05D006407 2.9e-07 58.2 32 75.0
Cpa.g.sc116.46 Carica papaya HOM05D001392 ORTHO05D006407 2.9e-07 58.2 32 71.9
CiPaw.09G167000 Carya illinoinensis HOM05D001392 ORTHO05D006407 2.9e-07 58.2 75 45.3
MD17G1259800 Malus domestica HOM05D001392 ORTHO05D006407 2.9e-07 58.2 32 75.0
Os07g0163500 Oryza sativa ssp. japonica HOM05D001392 ORTHO05D006407 2.9e-07 58.2 31 77.4
Solyc12g019110.3 Solanum lycopersicum HOM05D001392 ORTHO05D006407 2.9e-07 58.2 32 75.0
Sopen12g009300 Solanum pennellii HOM05D001392 ORTHO05D006407 2.9e-07 58.2 32 75.0
GSVIVG01010703001 Vitis vinifera HOM05D001392 ORTHO05D006407 2.9e-07 58.2 31 80.6
ATR0697G119 Amborella trichopoda HOM05D001392 ORTHO05D006407 3.8e-07 57.8 52 51.9
CDE10G1341 Ceratophyllum demersum HOM05D001392 ORTHO05D006407 3.8e-07 57.8 31 77.4
AUR62038698 Chenopodium quinoa HOM05D001392 ORTHO05D006407 3.8e-07 57.8 75 46.7
CsaV3_3G020830 Cucumis sativus L. HOM05D001392 ORTHO05D006407 4.9e-07 57.4 73 42.5
Lalb_Chr14g0364821 Lupinus albus HOM05D001392 ORTHO05D006407 4.9e-07 57.4 32 71.9
Sed0009589 Sechium edule HOM05D001392 ORTHO05D006407 4.9e-07 57.4 31 74.2
Zm00001eb117220 Zea mays HOM05D001392 ORTHO05D006407 4.9e-07 57.4 31 74.2
MELO3C020199.2 Cucumis melo HOM05D001392 ORTHO05D006407 6.5e-07 57.0 73 42.5
Nn7g38289 Nelumbo nucifera HOM05D001392 ORTHO05D006407 6.5e-07 57.0 31 77.4
Potri.004G090732 Populus trichocarpa HOM05D001392 ORTHO05D006407 6.5e-07 57.0 32 75.0
HanXRQChr10g0283681 Helianthus annuus HOM05D001392 ORTHO05D006407 8.4e-07 56.6 31 74.2
Nitab4.5_0003197g0040 Nicotiana tabacum HOM05D001392 ORTHO05D006407 8.4e-07 56.6 32 75.0
Peaxi162Scf00057g02722 Petunia axillaris HOM05D001392 ORTHO05D006407 8.4e-07 56.6 32 75.0
MBI11_g24566_MAGBIO Magnolia biondii HOM05D001392 ORTHO05D006407 1.1e-06 56.2 31 77.4
AT5G16715 Arabidopsis thaliana HOM05D001392 ORTHO05D006407 1.4e-06 55.8 32 75.0
A10p22510 Brassica napus HOM05D001392 ORTHO05D006407 1.4e-06 55.8 32 71.9
C09p60360 Brassica napus HOM05D001392 ORTHO05D006407 1.4e-06 55.8 32 71.9
BolC9t58869H Brassica oleracea HOM05D001392 ORTHO05D006407 1.4e-06 55.8 32 71.9
Carub.0006s1493 Capsella rubella HOM05D001392 ORTHO05D006407 1.4e-06 55.8 32 75.0
CARHR196470 Cardamine hirsuta HOM05D001392 ORTHO05D006407 1.4e-06 55.8 32 75.0
Lsat_1_v5_gn_3_65141 Lactuca sativa HOM05D001392 ORTHO05D006407 1.4e-06 55.8 32 71.9
Sp6g27440 Schrenkiella parvula HOM05D001392 ORTHO05D006407 1.4e-06 55.8 32 75.0
THA.LOC104827192 Tarenaya hassleriana HOM05D001392 ORTHO05D006407 1.4e-06 55.8 32 75.0
TPR.G35631 Trifolium pratense HOM05D001392 ORTHO05D006407 1.9e-06 55.5 32 68.8
Aqoxy2G00612 Aquilegia oxysepala HOM05D001392 ORTHO05D006407 2.5e-06 55.1 74 44.6
Ca_25679_v3 Cicer arietinum L. HOM05D001392 ORTHO05D006407 2.5e-06 55.1 42 57.1
Lj2g0008629 Lotus japonicus HOM05D001392 ORTHO05D006407 2.5e-06 55.1 44 52.3
AL6G27720 Arabidopsis lyrata HOM05D001392 ORTHO05D006407 3.2e-06 54.7 32 71.9
BcaC04g18859 Brassica carinata HOM05D001392 ORTHO05D006407 4.2e-06 54.3 32 71.9
BraA10t44310Z Brassica rapa HOM05D001392 ORTHO05D006407 4.2e-06 54.3 32 71.9
Thhalv10012577m.g Eutrema salsugineum HOM05D001392 ORTHO05D006407 4.2e-06 54.3 32 71.9
VMungo0464G0907 Vigna mungo HOM05D001392 ORTHO05D006407 4.2e-06 54.3 32 65.6
arahy.Tifrunner.gnm1.ann1.0T11RW Arachis hypogaea HOM05D001392 ORTHO05D006407 5.5e-06 53.9 32 65.6
arahy.Tifrunner.gnm1.ann1.XLS2Y4 Arachis hypogaea HOM05D001392 ORTHO05D006407 5.5e-06 53.9 32 65.6
Phvul.004G073700 Phaseolus vulgaris HOM05D001392 ORTHO05D006407 5.5e-06 53.9 32 65.6
Glyma.17G186800 Glycine max HOM05D001392 ORTHO05D006407 7.1e-06 53.5 42 52.4
Pp3c12_13790 Physcomitrium patens HOM05D001392 ORTHO05D006407 7.1e-06 53.5 31 67.7
Psat1g089800 Pisum sativum HOM05D001392 ORTHO05D006407 7.1e-06 53.5 32 65.6


User provided reference genes

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