Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.0e-210 736.5 377 100.0
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.8e-208 727.6 377 99.2
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 8.4e-205 716.8 377 98.4
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 9.1e-191 670.2 374 92.2
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 3.8e-189 664.8 372 91.9
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 7.9e-187 657.1 377 90.5
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.5e-185 652.9 392 86.2
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.1e-183 646.7 375 90.1
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.9e-173 612.1 346 91.3
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 4.5e-166 588.2 381 80.8
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 4.5e-166 588.2 374 80.2
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.0e-165 587.0 382 80.6
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 3.8e-165 585.1 357 84.9
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.8e-165 585.1 382 81.2
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.6e-163 579.7 381 79.8
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.6e-163 579.7 372 82.5
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 4.7e-163 578.2 358 83.5
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.0e-162 577.0 358 83.5
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 6.8e-162 574.3 358 82.1
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 8.8e-162 573.9 385 79.0
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.2e-161 573.5 358 82.7
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 9.8e-161 570.5 384 79.4
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 2.8e-160 568.9 358 81.0
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 6.3e-160 567.8 348 82.8
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.1e-159 567.0 359 80.2
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 3.1e-159 565.5 376 78.2
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 3.1e-159 565.5 381 77.4
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 5.4e-159 564.7 356 81.7
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 7.0e-159 564.3 386 76.4
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 2.0e-158 562.8 348 83.3
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 3.5e-158 562.0 326 87.4
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.0e-157 560.5 353 81.6
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.3e-157 560.1 352 81.5
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.3e-157 560.1 352 81.5
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 1.7e-157 559.7 377 77.7
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 8.6e-157 557.4 380 77.1
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 1.5e-156 556.6 357 80.4
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 2.5e-156 555.8 325 86.2
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 3.3e-156 555.4 353 79.9
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 3.3e-156 555.4 325 86.5
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 4.3e-156 555.1 357 80.1
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 4.3e-156 555.1 342 82.5
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 5.6e-156 554.7 361 81.2
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 9.5e-156 553.9 380 76.6
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.2e-155 553.5 318 86.2
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 1.2e-155 553.5 318 86.2
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.2e-155 553.5 386 78.0
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.6e-155 553.1 378 75.9
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.1e-155 552.7 360 80.0
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.8e-155 552.4 332 83.7
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 3.6e-155 552.0 378 75.9
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 4.7e-155 551.6 357 78.2
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 8.0e-155 550.8 377 76.4
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 8.0e-155 550.8 357 79.0
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 8.0e-155 550.8 377 76.4
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.4e-154 550.1 353 80.2
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.4e-154 550.1 346 81.8
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 1.8e-154 549.7 349 81.4
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.8e-154 549.7 352 79.8
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 3.0e-154 548.9 348 79.9
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 4.0e-154 548.5 377 76.4
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 4.0e-154 548.5 378 75.7
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 5.2e-154 548.1 321 86.0
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.8e-154 547.7 357 78.4
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 8.9e-154 547.4 350 80.6
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.2e-153 547.0 326 85.3
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 1.2e-153 547.0 354 80.2
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.5e-153 546.6 378 75.1
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.0e-153 546.2 357 77.9
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 2.0e-153 546.2 378 75.9
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 2.6e-153 545.8 322 85.4
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.6e-153 545.8 346 80.6
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 4.4e-153 545.0 350 80.3
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 7.5e-153 544.3 330 82.4
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 9.8e-153 543.9 379 75.5
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 9.8e-153 543.9 299 90.3
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.7e-152 543.1 352 79.3
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 2.2e-152 542.7 336 82.4
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 2.9e-152 542.3 332 81.9
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 3.7e-152 542.0 350 80.0
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 3.7e-152 542.0 350 80.0
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.7e-152 542.0 324 84.3
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 6.4e-152 541.2 379 75.2
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 1.1e-151 540.4 350 79.7
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 1.1e-151 540.4 350 79.7
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.1e-151 540.4 361 77.8
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.1e-151 540.4 353 78.2
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.8e-151 539.7 325 83.7
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 3.2e-151 538.9 371 76.5
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 4.1e-151 538.5 379 74.7
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 4.1e-151 538.5 336 81.8
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 4.1e-151 538.5 332 81.6
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 4.1e-151 538.5 332 81.6
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.2e-150 537.0 332 81.3
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.6e-150 536.6 319 83.7
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 2.0e-150 536.2 362 78.5
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 2.0e-150 536.2 310 86.1
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 2.0e-150 536.2 325 83.4
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.5e-150 535.4 353 78.2
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 4.6e-150 535.0 356 77.5
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 7.8e-150 534.3 352 77.6
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.7e-149 533.1 299 88.3
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.5e-148 530.0 319 82.8
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 2.5e-148 529.3 337 80.1
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.5e-148 529.3 337 80.1
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.3e-148 528.9 354 77.1
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.3e-148 528.5 285 94.7
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 7.3e-148 527.7 313 85.3
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 7.3e-148 527.7 352 77.3
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 9.5e-148 527.3 325 81.5
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.2e-147 526.9 350 76.6
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.2e-147 526.9 307 85.3
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.2e-147 526.9 332 79.5
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 4.7e-147 525.0 332 80.1
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.0e-146 523.9 333 79.0
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.0e-146 523.9 315 83.2
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 2.3e-146 522.7 315 83.5
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 4.0e-146 521.9 285 91.9
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.2e-146 521.5 300 86.3
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.9e-146 520.8 299 87.0
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.9e-146 520.8 299 87.0
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 2.0e-145 519.6 356 73.6
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.4e-145 518.8 387 71.3
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 4.4e-145 518.5 356 73.3
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 5.8e-145 518.1 335 79.7
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.7e-144 516.5 376 74.5
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 8.3e-144 514.2 343 76.4
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 4.1e-143 511.9 377 72.7
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 4.1e-143 511.9 358 73.5
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 7.0e-143 511.1 352 74.1
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.6e-142 508.4 316 81.0
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 4.6e-142 508.4 355 76.1
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.0e-141 507.3 426 64.8
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.1e-139 499.6 315 79.0
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 1.5e-137 493.4 331 75.2
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 4.4e-137 491.9 314 78.7
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 7.5e-137 491.1 379 70.2
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 5.4e-135 485.0 321 75.4
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.7e-133 479.9 315 76.2
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.7e-133 479.9 300 79.7
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 3.0e-133 479.2 345 74.2
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.6e-133 478.0 333 73.0
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 8.6e-133 477.6 315 76.2
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 6.2e-131 471.5 299 79.3
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 8.9e-130 467.6 310 74.2
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.5e-129 466.8 308 79.5
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 9.9e-129 464.2 339 69.6
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.9e-116 423.3 321 68.5
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 3.8e-112 409.1 317 71.0
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 5.4e-111 405.2 313 65.5
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 1.8e-106 390.2 263 77.2
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 3.9e-101 372.5 259 76.4
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 7.4e-100 368.2 291 64.6
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 3.9e-93 345.9 300 65.3
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 2.0e-76 290.4 266 60.9
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 3.6e-70 269.6 186 75.3
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 4.7e-70 269.2 164 85.4
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 6.1e-70 268.9 310 50.6
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 6.5e-64 248.8 168 73.2
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 1.3e-48 198.0 113 88.5
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 3.8e-48 196.4 112 82.1
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.0e-40 171.8 171 59.6
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.0e-40 171.8 171 59.6
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.0e-40 171.8 171 59.6
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 4.4e-36 156.4 101 76.2
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 2.2e-35 154.1 99 77.8
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 2.2e-35 154.1 99 77.8
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 1.4e-34 151.4 98 76.5
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.4e-34 151.4 99 76.8
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 9.2e-34 148.7 103 72.8
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 3.0e-32 143.7 104 68.3
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 5.0e-32 142.9 284 34.2
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 4.3e-31 139.8 103 68.0
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 2.0e-20 104.4 64 78.1
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 2.4e-18 97.4 67 79.1
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 4.6e-17 93.2 49 93.9
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 4.3e-15 86.7 61 75.4
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 2.1e-09 67.8 35 85.7
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 2.3e-08 64.3 35 82.9


User provided reference genes

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