Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 5.2e-240 833.9 416 100.0
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 8.9e-240 833.2 416 99.8
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.1e-232 809.7 417 96.9
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 4.5e-215 751.1 414 90.8
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 5.6e-210 734.2 455 82.2
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 6.9e-208 727.2 416 87.3
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 9.0e-200 700.3 420 86.2
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 2.9e-190 668.7 406 83.7
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 6.5e-190 667.5 366 89.6
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 1.9e-189 666.0 426 79.8
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 9.4e-189 663.7 392 84.9
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.4e-187 659.8 401 83.0
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 3.0e-187 658.7 442 76.7
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 6.7e-187 657.5 442 76.7
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 1.1e-186 656.8 414 80.9
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 2.5e-186 655.6 419 80.7
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 2.5e-186 655.6 389 84.1
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 4.3e-186 654.8 400 82.8
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 5.7e-186 654.4 405 80.5
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 7.4e-186 654.1 388 84.5
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 9.7e-186 653.7 393 84.2
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 1.3e-185 653.3 395 83.8
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 3.7e-185 651.7 384 83.1
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 1.1e-184 650.2 393 83.5
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 1.1e-184 650.2 397 82.4
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 1.4e-184 649.8 388 84.0
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 6.9e-184 647.5 394 81.7
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 1.5e-183 646.4 423 78.0
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 2.0e-183 646.0 394 83.0
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 4.5e-183 644.8 410 79.8
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 1.0e-182 643.7 374 84.8
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 2.9e-182 642.1 384 83.6
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 5.5e-181 637.9 413 80.4
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 9.4e-181 637.1 356 86.5
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.2e-180 636.7 423 77.1
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 3.6e-180 635.2 354 84.5
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 3.6e-180 635.2 392 82.9
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 3.6e-180 635.2 400 81.0
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.4e-179 633.3 400 78.0
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 1.4e-179 633.3 397 78.6
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 1.4e-179 633.3 397 78.6
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.4e-179 633.3 400 78.0
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 1.4e-179 633.3 421 76.7
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 1.8e-179 632.9 400 78.2
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 6.7e-179 630.9 436 75.9
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 8.8e-179 630.6 354 83.9
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 8.8e-179 630.6 411 77.1
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 1.1e-178 630.2 396 80.8
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 1.5e-178 629.8 406 77.8
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 3.3e-178 628.6 385 82.1
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 9.7e-178 627.1 377 84.1
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.3e-177 626.7 413 77.5
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.3e-177 626.7 414 77.8
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 8.2e-177 624.0 395 78.2
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.1e-176 623.6 392 80.1
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 1.1e-176 623.6 403 78.9
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 2.4e-176 622.5 359 83.0
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 1.6e-175 619.8 359 84.7
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 3.5e-175 618.6 398 77.4
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 4.5e-175 618.2 399 78.9
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.7e-174 616.3 398 76.6
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 5.0e-174 614.8 408 76.5
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 5.0e-174 614.8 400 78.8
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 5.0e-174 614.8 436 72.5
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.1e-173 613.6 401 77.6
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.9e-173 612.8 421 75.5
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 9.4e-173 610.5 414 78.3
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 3.6e-172 608.6 459 69.5
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 1.0e-171 607.1 426 75.1
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 1.4e-171 606.7 378 79.9
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 2.0e-170 602.8 426 73.0
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 2.6e-170 602.4 420 74.8
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 2.6e-170 602.4 376 80.9
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 2.2e-169 599.4 406 75.6
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 4.8e-169 598.2 424 74.8
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.8e-168 596.3 423 74.7
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 2.4e-168 595.9 391 77.2
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 2.4e-168 595.9 420 75.2
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 2.4e-168 595.9 381 78.5
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 9.1e-168 594.0 404 74.3
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 1.6e-167 593.2 386 78.0
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 3.5e-167 592.0 363 81.8
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 1.0e-166 590.5 367 79.8
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 1.0e-166 590.5 336 85.1
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 2.2e-166 589.3 403 74.2
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 2.9e-166 589.0 405 73.6
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 6.5e-166 587.8 354 81.9
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 1.1e-165 587.0 396 74.2
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 5.5e-165 584.7 411 73.7
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 1.6e-164 583.2 418 71.1
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.7e-164 582.4 449 70.4
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 2.6e-162 575.9 379 76.3
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 2.6e-162 575.9 380 76.3
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.3e-161 573.5 327 84.7
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.3e-161 573.5 327 84.7
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 3.7e-161 572.0 365 77.8
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 2.7e-159 565.8 438 68.3
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 5.5e-157 558.1 396 69.9
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 2.0e-154 549.7 394 72.3
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 1.7e-153 546.6 382 74.3
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 2.3e-150 536.2 460 61.7
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 7.3e-149 531.2 525 56.6
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 1.0e-147 527.3 365 69.9
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 8.9e-147 524.2 411 67.4
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 3.7e-145 518.8 564 53.2
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 6.4e-145 518.1 359 71.6
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 2.7e-143 512.7 359 71.0
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 7.8e-135 484.6 484 55.2
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.5e-117 427.2 452 57.5
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 1.9e-117 426.8 381 60.4
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 2.4e-115 419.9 411 53.3
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 6.0e-111 405.2 369 55.0
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.3e-110 404.1 209 90.9
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 3.0e-110 402.9 203 94.6
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.3e-108 397.5 358 56.1
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 1.1e-77 294.7 298 50.0
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 2.2e-60 237.3 376 36.4
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 4.1e-59 233.0 114 95.6
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 8.5e-57 225.3 122 86.1
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 2.2e-49 200.7 181 60.2
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 1.2e-42 178.3 111 78.4
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 5.9e-42 176.0 211 50.7
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 5.6e-32 142.9 103 68.0
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 4.0e-30 136.7 69 85.5
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 4.9e-28 129.8 73 87.7
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 4.1e-27 126.7 85 71.8
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 5.9e-26 122.9 84 70.2
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 2.6e-21 107.5 80 67.5
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.2e-18 98.6 53 81.1
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.2e-15 88.6 57 71.9
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 2.0e-13 81.3 62 67.7
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 4.9e-12 76.6 43 83.7
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 1.2e-10 72.0 70 58.6
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 3.9e-09 67.0 38 73.7
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.5e-08 64.3 73 52.1
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 7.3e-08 62.8 39 71.8


User provided reference genes

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