Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 1.1e-182 643.3 334 100.0
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.6e-162 576.2 334 91.6
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 3.9e-161 571.6 333 90.1
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 2.0e-141 506.1 337 76.0
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 2.6e-141 505.8 334 83.2
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 3.2e-139 498.8 334 74.6
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 5.5e-139 498.0 332 76.2
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 2.1e-138 496.1 325 77.2
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 2.7e-138 495.7 330 76.4
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 6.0e-138 494.6 334 76.0
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.7e-137 491.1 326 76.7
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 1.9e-136 489.6 332 73.5
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 1.9e-136 489.6 334 73.4
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 3.3e-136 488.8 330 75.5
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 4.3e-136 488.4 333 73.6
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 6.3e-135 484.6 337 72.1
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 8.2e-135 484.2 325 73.5
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 1.4e-134 483.4 340 72.4
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 1.8e-134 483.0 334 73.1
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 2.4e-134 482.6 316 79.7
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 2.4e-134 482.6 316 79.7
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 6.9e-134 481.1 279 82.4
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 9.0e-134 480.7 329 76.6
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 9.0e-134 480.7 329 76.6
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 2.0e-133 479.6 309 76.1
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 4.5e-133 478.4 335 76.4
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 8.4e-132 474.2 335 72.5
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 2.5e-131 472.6 336 74.4
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 2.5e-131 472.6 306 75.8
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 7.2e-131 471.1 326 73.9
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 9.3e-131 470.7 339 72.0
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 1.6e-130 469.9 303 76.2
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.6e-130 469.9 337 73.3
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 2.7e-130 469.2 338 71.3
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 6.1e-130 468.0 331 73.4
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 7.9e-130 467.6 336 70.2
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 1.8e-129 466.5 333 72.4
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.9e-129 465.3 333 70.3
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 8.7e-129 464.2 339 69.9
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 2.5e-128 462.6 340 70.0
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 3.3e-128 462.2 334 70.7
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 9.7e-128 460.7 334 70.4
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 1.3e-127 460.3 287 78.4
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.3e-127 458.0 333 70.9
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 6.3e-127 458.0 335 70.4
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.4e-126 456.8 333 69.7
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 6.9e-126 454.5 336 69.6
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 9.0e-126 454.1 329 70.8
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 2.6e-125 452.6 337 73.3
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 4.5e-125 451.8 301 74.1
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 5.9e-125 451.4 340 68.2
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 6.5e-124 448.0 286 75.9
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 6.5e-124 448.0 332 69.6
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 8.5e-124 447.6 337 68.8
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 2.5e-123 446.0 305 73.8
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 2.5e-123 446.0 310 71.6
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.2e-122 443.7 305 73.1
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 1.2e-122 443.7 316 75.0
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.2e-122 443.7 262 80.2
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 2.1e-122 443.0 325 71.4
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 3.6e-122 442.2 330 71.5
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.5e-120 436.8 334 68.3
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 2.5e-120 436.0 340 67.6
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 2.5e-120 436.0 339 67.6
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 5.7e-120 434.9 350 65.1
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.1e-118 430.6 274 76.3
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.4e-118 429.5 253 80.2
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 3.1e-118 429.1 332 72.6
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 5.3e-118 428.3 284 72.2
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 2.0e-117 426.4 316 72.8
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 5.9e-117 424.9 220 89.5
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 3.8e-116 422.2 222 89.2
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 8.5e-116 421.0 338 64.8
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 2.5e-115 419.5 325 67.7
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 3.2e-115 419.1 331 66.5
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 4.7e-114 415.2 333 68.2
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 7.9e-114 414.5 335 67.2
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 3.9e-113 412.1 334 69.2
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 8.8e-113 411.0 249 77.5
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.4e-110 403.7 280 70.4
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 3.1e-110 402.5 222 83.3
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 7.0e-110 401.4 308 67.5
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 3.5e-109 399.1 350 62.3
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 5.5e-107 391.7 344 61.9
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 2.6e-104 382.9 206 87.4
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 1.7e-103 380.2 348 60.1
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 2.7e-98 362.8 291 68.0
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.4e-97 360.5 264 70.1
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 8.3e-95 351.3 301 62.8
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 5.4e-94 348.6 335 63.9
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.2e-93 347.4 301 62.5
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.9e-92 342.8 219 72.1
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.9e-92 342.8 219 72.1
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 5.5e-91 338.6 224 81.7
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 9.4e-91 337.8 257 62.3
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.4e-89 334.0 265 65.3
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 6.8e-89 331.6 487 43.5
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 1.2e-88 330.9 371 51.2
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 6.6e-84 315.1 266 62.8
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 6.6e-84 315.1 235 68.5
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.2e-82 310.8 220 64.1
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 7.0e-78 295.0 266 53.8
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 3.5e-77 292.7 167 83.2
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 2.9e-71 273.1 281 50.2
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 4.1e-70 269.2 262 58.4
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.3e-67 258.5 220 60.0
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.1e-62 242.7 213 59.6
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 1.7e-60 237.3 205 54.1
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.9e-60 236.1 248 55.6
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 2.0e-56 223.8 189 64.0
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 7.6e-56 221.9 115 84.3
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.1e-45 187.2 164 59.8
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 3.3e-43 179.9 97 86.6
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 5.8e-40 169.1 109 77.1
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 2.6e-32 143.7 284 30.6
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.5e-30 136.0 155 49.0
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 1.3e-26 124.8 62 88.7
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.2e-23 114.0 104 58.7
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 1.3e-20 104.8 143 42.7
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 5.0e-15 86.3 43 95.3
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.1e-09 68.6 160 34.4
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.1e-09 66.6 68 52.9
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.1e-09 66.6 68 52.9
A08p28900 Brassica napus HOM05D006408 ORTHO05D008038 1.3e-07 61.6 44 70.5
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.4e-06 58.2 37 67.6


User provided reference genes

Program Settings