Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 1.7e-124 449.5 249 100.0
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.6e-85 319.3 171 98.2
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 3.7e-84 315.5 171 97.1
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 6.6e-65 251.5 167 80.2
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 7.6e-61 238.0 171 76.0
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 2.2e-60 236.5 145 85.5
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.5e-45 187.2 144 68.1
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.3e-44 184.1 115 77.4
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 2.9e-44 183.0 133 67.7
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 3.8e-44 182.6 152 64.5
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 3.2e-43 179.5 118 76.3
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.9e-42 174.9 150 60.0
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.8e-41 173.7 148 62.2
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.5e-40 170.6 140 62.1
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 1.9e-40 170.2 145 57.9
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.9e-40 170.2 142 62.0
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 3.3e-40 169.5 120 69.2
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.3e-40 169.1 139 62.6
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 4.3e-40 169.1 161 59.0
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 4.3e-40 169.1 146 61.6
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 5.7e-40 168.7 165 60.0
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 9.7e-40 167.9 119 68.9
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 9.7e-40 167.9 141 61.0
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 2.2e-39 166.8 142 62.0
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 2.2e-39 166.8 127 67.7
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 2.8e-39 166.4 162 62.3
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.8e-38 163.7 115 69.6
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 4.1e-38 162.5 135 64.4
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 4.1e-38 162.5 138 58.0
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 6.9e-38 161.8 124 66.9
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 6.9e-38 161.8 144 59.0
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 2.6e-37 159.8 153 57.5
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 5.9e-37 158.7 169 55.0
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 7.6e-37 158.3 145 59.3
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 2.2e-36 156.8 129 58.9
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 6.5e-36 155.2 115 61.7
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 1.9e-35 153.7 152 56.6
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 3.2e-35 152.9 136 58.8
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 7.2e-35 151.8 112 65.2
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.2e-34 151.0 152 55.3
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.1e-34 150.2 141 55.3
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 3.6e-34 149.4 171 51.5
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 4.6e-34 149.1 118 64.4
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 7.9e-34 148.3 118 63.6
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.0e-33 147.9 135 57.8
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.8e-33 147.1 132 59.1
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 3.9e-33 146.0 155 54.2
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 5.1e-33 145.6 133 57.9
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 5.1e-33 145.6 114 66.7
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 5.1e-33 145.6 146 57.5
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 6.7e-33 145.2 140 58.6
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 8.8e-33 144.8 145 55.2
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.1e-32 144.4 139 56.8
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.5e-32 144.1 134 56.7
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 1.5e-32 144.1 159 50.9
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.9e-32 143.7 131 58.8
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 2.5e-32 143.3 149 55.0
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 2.5e-32 143.3 137 56.9
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 2.5e-32 143.3 136 57.4
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 2.5e-32 143.3 126 61.1
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 3.3e-32 142.9 119 60.5
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 3.3e-32 142.9 171 52.6
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 3.3e-32 142.9 131 60.3
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 3.3e-32 142.9 142 52.1
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 4.3e-32 142.5 151 55.0
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 4.3e-32 142.5 139 57.6
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 5.7e-32 142.1 140 54.3
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 9.7e-32 141.4 134 54.5
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.3e-31 141.0 126 55.6
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.7e-31 140.6 171 49.1
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.7e-31 140.6 94 73.4
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 2.2e-31 140.2 145 49.7
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 2.8e-31 139.8 155 51.0
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 6.3e-31 138.7 89 74.2
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.1e-30 137.9 148 54.7
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.8e-30 137.1 145 52.4
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 3.1e-30 136.3 140 56.4
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 3.1e-30 136.3 165 50.9
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 4.1e-30 136.0 171 49.1
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 5.3e-30 135.6 154 50.0
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 9.1e-30 134.8 128 54.7
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 1.2e-29 134.4 137 54.7
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.5e-29 134.0 162 45.1
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 2.0e-29 133.7 138 53.6
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.6e-29 133.3 139 54.7
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.6e-29 133.3 139 54.7
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.4e-29 132.9 89 70.8
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 4.5e-29 132.5 134 55.2
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 4.5e-29 132.5 134 55.2
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 7.7e-29 131.7 143 50.3
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 7.7e-29 131.7 143 50.3
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.0e-28 131.3 134 54.5
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.0e-28 131.3 116 55.2
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.3e-28 131.0 143 48.3
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 1.7e-28 130.6 139 51.1
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-28 130.6 145 51.0
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.7e-28 130.6 164 48.8
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 5.0e-28 129.0 132 49.2
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 8.5e-28 128.3 144 51.4
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-27 127.9 135 54.1
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 1.9e-27 127.1 150 50.7
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 2.5e-27 126.7 137 50.4
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 3.2e-27 126.3 100 58.0
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 5.5e-27 125.6 87 72.4
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 5.5e-27 125.6 135 50.4
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 5.5e-27 125.6 135 50.4
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 5.5e-27 125.6 143 51.7
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.2e-27 125.2 140 50.7
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 7.2e-27 125.2 162 46.3
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 2.7e-26 123.2 74 78.4
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 3.6e-26 122.9 138 46.4
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 6.1e-26 122.1 133 52.6
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 1.0e-25 121.3 138 45.7
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.0e-25 121.3 129 48.1
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.0e-25 121.3 129 48.1
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.8e-25 120.6 141 50.4
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.8e-25 120.6 141 50.4
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.8e-25 120.6 141 50.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 3.0e-25 119.8 103 62.1
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.9e-25 119.4 77 71.4
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 3.9e-25 119.4 117 50.4
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 8.8e-25 118.2 120 56.7
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 2.6e-24 116.7 87 64.4
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 9.7e-24 114.8 145 44.1
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.3e-23 114.4 91 58.2
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.7e-23 114.0 127 51.2
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.7e-23 114.0 87 62.1
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 2.2e-23 113.6 144 44.4
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 2.8e-23 113.2 144 44.4
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 1.1e-22 111.3 171 44.4
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.4e-22 110.9 145 43.4
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.8e-22 110.5 143 52.4
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 1.2e-21 107.8 118 50.0
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 3.4e-21 106.3 87 56.3
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 5.9e-21 105.5 155 43.2
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 5.0e-20 102.4 143 38.5
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 5.0e-20 102.4 147 42.2
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 6.5e-20 102.1 120 44.2
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 3.2e-19 99.8 98 52.0
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 7.2e-19 98.6 138 46.4
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 6.7e-17 92.0 100 51.0
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 8.8e-17 91.7 57 77.2
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.6e-16 90.1 62 71.0
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 6.3e-15 85.5 147 36.7
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 9.1e-14 81.6 155 38.7
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.0e-12 78.2 143 38.5
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 5.0e-12 75.9 126 35.7
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 1.1e-11 74.7 138 37.7
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 9.4e-11 71.6 77 49.4
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 3.6e-10 69.7 42 76.2
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 3.6e-10 69.7 95 42.1
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.4e-09 67.8 70 50.0
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 3.0e-09 66.6 90 42.2
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 9.7e-08 61.6 72 44.4
Hma1.2p1_0549F.1_g176960 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.7e-07 59.7 39 74.4
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 6.3e-07 58.9 39 71.8
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 3.1e-06 56.6 41 65.9


User provided reference genes

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