Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 3615.1 1990 100.0
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 3550.0 1990 98.8
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 3518.4 1991 97.5
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 3195.6 1928 89.3
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 3114.3 1938 87.6
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2984.9 1790 87.2
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2878.2 1927 83.1
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2623.2 1922 74.5
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2598.9 1934 73.5
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2597.4 1960 73.9
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2574.3 1934 72.9
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2566.6 1941 73.6
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2533.1 1937 73.5
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2525.4 1902 73.7
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2525.4 1934 72.9
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2522.3 1941 72.9
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2499.9 1936 72.6
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2499.5 1857 73.6
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2494.2 1931 72.1
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2493.8 1932 72.0
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2479.1 1933 71.0
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2476.8 1935 72.5
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2475.7 1930 71.3
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2474.1 1934 71.7
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2471.0 1932 72.2
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2471.0 1955 70.7
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2468.0 1927 70.6
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2468.0 1934 71.3
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2467.2 1931 71.8
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2459.9 1784 73.5
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2456.8 1938 70.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2442.2 1887 71.4
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2434.4 1942 69.8
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2432.1 1965 68.9
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2431.8 1819 72.2
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2429.1 2031 67.4
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2429.1 1935 70.7
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2427.9 1934 71.0
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2420.2 1934 70.9
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2413.6 1936 70.3
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2395.2 1926 68.8
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2369.7 1934 67.4
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2355.9 1932 69.3
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2332.8 1934 68.6
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2332.8 1933 67.5
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2332.0 1820 68.6
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2331.2 1927 69.1
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2329.3 1930 68.7
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2325.8 1931 68.3
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2312.0 1815 69.3
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2311.2 1939 67.3
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2302.7 1918 68.0
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2299.2 1910 67.6
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2292.3 1930 66.4
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2290.4 1910 67.9
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2277.3 1940 67.7
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2276.1 1941 67.0
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2271.1 1932 65.6
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2270.0 1933 67.1
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2266.9 1929 65.0
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2261.1 1943 66.6
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2257.3 1817 67.5
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2251.9 1909 67.3
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2245.3 1922 65.1
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2226.1 1932 65.7
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2216.4 1814 66.4
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2214.9 1921 64.4
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2213.7 1818 67.7
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2197.2 1953 63.0
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2197.2 1894 66.5
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2181.0 1814 65.9
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2179.1 1835 66.4
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2170.2 1786 66.1
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2155.6 1930 64.6
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2142.1 1922 64.1
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2115.9 1935 62.8
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2112.4 1908 63.0
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2104.3 1850 63.4
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 2080.1 1685 67.6
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 2072.4 1968 62.1
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2064.3 1865 62.2
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2063.1 1867 62.2
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2057.0 1929 62.6
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2033.5 1860 61.1
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1994.9 1872 60.1
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1983.0 1902 58.0
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1976.8 1873 60.2
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1971.4 1936 59.9
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1966.4 1879 58.4
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1963.0 1879 58.4
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1950.6 1879 58.2
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1949.9 1885 58.7
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1949.5 1874 58.9
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1944.1 1880 58.1
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1942.9 1874 58.3
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1942.5 1885 58.4
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1942.5 1885 58.4
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1942.5 1873 58.8
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1940.6 1886 58.2
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1936.8 1724 63.1
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1930.2 1845 59.3
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1922.5 1936 58.9
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1916.4 1874 58.8
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1912.1 1941 57.6
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1798.5 1973 56.6
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1690.2 1951 52.2
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1684.8 1238 72.9
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1632.1 1230 73.0
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1625.5 1832 52.1
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1559.3 1482 62.1
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1547.3 1349 62.0
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1545.8 1939 50.4
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1525.0 1893 48.9
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1525.0 1893 48.9
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1524.2 1934 48.9
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1500.0 1233 68.4
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1498.0 1856 49.4
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1444.9 1853 49.5
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1416.4 1501 56.2
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1314.7 1078 69.3
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1278.1 1775 45.2
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1250.3 1337 56.6
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1230.7 920 71.1
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1190.6 1039 64.9
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 3.1e-306 1056.2 863 67.6
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 2.0e-297 1026.9 1455 48.4
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 9.7e-292 1008.1 842 68.1
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 2.8e-283 979.9 1621 42.3
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.0e-261 906.7 1824 36.5
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.4e-260 903.3 816 61.5
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 1.8e-253 880.9 837 58.7
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.0e-212 744.6 613 67.0
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.0e-192 677.6 658 56.4
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 1.5e-191 675.2 713 54.3
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 7.6e-188 662.9 645 55.3
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.3e-179 635.6 497 66.0
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.5e-172 612.1 617 57.2
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.9e-170 605.1 449 75.1
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.2e-154 551.2 559 58.7
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.3e-147 529.3 558 58.4
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 5.9e-132 477.2 455 59.8
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 2.5e-122 445.3 443 57.3
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 4.3e-114 417.9 1237 28.9
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.1e-90 340.1 863 33.3
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 5.1e-83 314.7 443 45.6
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 7.4e-82 310.8 648 34.7
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 3.8e-78 298.5 2071 22.6
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.5e-76 292.0 224 71.0
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.9e-75 288.5 470 39.4
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 5.1e-75 288.1 423 43.0
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.1e-72 280.4 273 70.0
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.7e-70 273.1 187 100.0
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.0e-67 263.8 197 72.1
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.9e-54 219.2 271 48.3
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.2e-47 197.2 238 53.8
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 9.8e-34 151.0 165 52.7
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 2.3e-19 103.2 172 39.5
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 4.1e-16 92.4 128 67.2
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 9.2e-16 91.3 63 68.3
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 2.0e-15 90.1 69 68.1
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.3e-14 87.4 52 69.2
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 4.3e-13 82.4 60 66.7
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 3.6e-12 79.3 89 49.4
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.9e-08 67.0 52 57.7
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 3.2e-08 66.2 33 81.8
AL4G28990 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 2.7e-07 63.2 229 28.4
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 7.8e-07 61.6 39 76.9
BraA05t20162Z Brassica rapa HOM05D003335 ORTHO05D003853 1.0e-06 61.2 228 28.1
Nitab4.5_0026868g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 1.0e-06 61.2 41 68.3
EL10Ac7g17257 Beta vulgaris HOM05D002037 ORTHO05D021575 1.3e-06 60.8 38 78.9
BcaC02g11420 Brassica carinata HOM05D003335 ORTHO05D003853 1.7e-06 60.5 228 28.1
A05p12180 Brassica napus HOM05D003335 ORTHO05D003853 1.7e-06 60.5 228 28.1
C04p15750 Brassica napus HOM05D003335 ORTHO05D003853 1.7e-06 60.5 228 28.1
BolC4t23145H Brassica oleracea HOM05D003335 ORTHO05D003853 1.7e-06 60.5 228 28.1
Thhalv10016510m.g Eutrema salsugineum HOM05D003335 ORTHO05D003853 1.7e-06 60.5 229 28.8
Cfa014748 Carpinus fangiana HOM05D000549 ORTHO05D021575 2.3e-06 60.1 37 81.1
Sp4g15650 Schrenkiella parvula HOM05D003335 ORTHO05D003853 3.9e-06 59.3 229 28.8
BcaC02g07839 Brassica carinata HOM05D003335 ORTHO05D003853 5.0e-06 58.9 229 28.4
C04p62760 Brassica napus HOM05D003335 ORTHO05D003853 5.0e-06 58.9 229 28.4
BolC4t27760H Brassica oleracea HOM05D003335 ORTHO05D003853 5.0e-06 58.9 229 28.4
A04p25630 Brassica napus HOM05D003335 ORTHO05D003853 6.6e-06 58.5 229 28.4
BraA04t18067Z Brassica rapa HOM05D003335 ORTHO05D003853 6.6e-06 58.5 229 28.4


User provided reference genes

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