Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.003G110900 Gossypium raimondii HOM05D022939 ORTHO05D036108 3.2e-60 235.0 123 100.0
Gohir.D03G104900 Gossypium hirsutum HOM05D037159 ORTHO05D005364 4.5e-22 108.2 59 94.9
Gorai.003G093700 Gossypium raimondii HOM05D037159 ORTHO05D048125 5.9e-22 107.8 59 94.9
Gohir.D02G177660 Gossypium hirsutum HOM05D022939 ORTHO05D036108 8.5e-21 104.0 54 98.1
Gohir.D03G104850 Gossypium hirsutum HOM05D022939 ORTHO05D036108 3.6e-19 98.6 50 98.0
Gohir.D03G060501 Gossypium hirsutum HOM05D037159 ORTHO05D048125 3.1e-15 85.5 59 79.7
Gohir.D11G212600 Gossypium hirsutum HOM05D022939 ORTHO05D217445 1.2e-14 83.6 88 60.2
Gohir.A10G176900 Gossypium hirsutum HOM05D003868 ORTHO05D005364 3.4e-14 82.0 45 93.3
Gohir.D10G183600 Gossypium hirsutum HOM05D003868 ORTHO05D005364 3.4e-14 82.0 45 93.3
Gorai.011G205800 Gossypium raimondii HOM05D003868 ORTHO05D005364 3.4e-14 82.0 45 93.3
Duzib128G0320 Durio zibethinus HOM05D003868 ORTHO05D005364 2.2e-13 79.3 45 88.9
Thecc.05G330900 Theobroma cacao HOM05D003868 ORTHO05D005364 2.9e-13 79.0 45 88.9
SGA_v2.0_scaffold464G51994 Striga asiatica HOM05D003868 ORTHO05D005364 5.0e-13 78.2 96 49.0
COL.COLO4_28215 Corchorus olitorius HOM05D003868 ORTHO05D005364 8.5e-13 77.4 45 86.7
Rhsim05G0124800 Rhododendron simsii HOM05D003868 ORTHO05D005364 1.9e-12 76.3 45 84.4
TWI12G0833 Tripterygium wilfordii HOM05D003868 ORTHO05D005364 2.5e-12 75.9 45 86.7
vmacro19799 Vaccinium macrocarpon HOM05D003868 ORTHO05D005364 2.5e-12 75.9 125 40.0
CiPaw.02G000700 Carya illinoinensis HOM05D003868 ORTHO05D005364 3.2e-12 75.5 45 84.4
Cc02_g36030 Coffea canephora HOM05D003868 ORTHO05D005364 3.2e-12 75.5 45 84.4
Ciclev10028527m.g Citrus clementina HOM05D003868 ORTHO05D005364 4.2e-12 75.1 45 84.4
MSTRG.20351 Avicennia marina HOM05D003868 ORTHO05D005364 5.5e-12 74.7 45 82.2
SalBow1G5269 Salvia bowleyana HOM05D003868 ORTHO05D005364 7.2e-12 74.3 45 84.4
SalBow1G5332 Salvia bowleyana HOM05D003868 ORTHO05D005364 7.2e-12 74.3 45 84.4
MELO3C015225.2 Cucumis melo HOM05D003868 ORTHO05D005364 1.2e-11 73.6 45 82.2
CsaV3_1G038240 Cucumis sativus L. HOM05D003868 ORTHO05D005364 1.2e-11 73.6 45 82.2
Glyma.10G141800 Glycine max HOM05D003868 ORTHO05D005364 1.2e-11 73.6 45 82.2
Glyma.20G090300 Glycine max HOM05D003868 ORTHO05D005364 1.2e-11 73.6 45 82.2
Sed0020210 Sechium edule HOM05D003868 ORTHO05D005364 1.2e-11 73.6 45 82.2
Sc07g0001850 Simmondsia chinensis HOM05D003868 ORTHO05D005364 1.2e-11 73.6 45 82.2
VMungo0720G2099 Vigna mungo HOM05D003868 ORTHO05D005364 1.2e-11 73.6 45 82.2
Cpa.g.sc48.229 Carica papaya HOM05D003868 ORTHO05D005364 1.6e-11 73.2 45 82.2
Migut.K00044 Erythranthe guttata HOM05D003868 ORTHO05D005364 1.6e-11 73.2 45 80.0
Aqoxy5G02863 Aquilegia oxysepala HOM05D003868 ORTHO05D005364 2.1e-11 72.8 46 80.4
Eucgr.H01340 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.1e-11 72.8 46 80.4
Hund04404 Selenicereus undatus HOM05D003868 ORTHO05D005364 2.1e-11 72.8 96 47.9
GSVIVG01031344001 Vitis vinifera HOM05D003868 ORTHO05D005364 2.1e-11 72.8 45 80.0
TWI56G0733 Tripterygium wilfordii HOM05D003868 ORTHO05D005364 2.7e-11 72.4 45 82.2
CSS0017748 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 3.6e-11 72.0 45 80.0
ClCG03G017940 Citrullus lanatus HOM05D003868 ORTHO05D005364 3.6e-11 72.0 45 80.0
Phvul.007G206500 Phaseolus vulgaris HOM05D003868 ORTHO05D005364 3.6e-11 72.0 45 80.0
PGR031G0514 Punica granatum HOM05D003868 ORTHO05D005364 3.6e-11 72.0 45 80.0
THA.LOC104818763 Tarenaya hassleriana HOM05D003868 ORTHO05D005364 3.6e-11 72.0 43 86.0
Atru.chr12.1514 Acer truncatum HOM05D003868 ORTHO05D005364 4.7e-11 71.6 45 80.0
Haze_15009 Corylus avellana HOM05D003868 ORTHO05D005364 4.7e-11 71.6 48 81.2
Manes.08G106600 Manihot esculenta HOM05D003868 ORTHO05D005364 4.7e-11 71.6 45 80.0
Prupe.6G302900 Prunus persica HOM05D003868 ORTHO05D005364 4.7e-11 71.6 43 86.0
AUR62003554 Chenopodium quinoa HOM05D003868 ORTHO05D005364 6.1e-11 71.2 96 47.9
AUR62017868 Chenopodium quinoa HOM05D003868 ORTHO05D005364 6.1e-11 71.2 96 47.9
Dinv30957 Davidia involucrata HOM05D003868 ORTHO05D005364 6.1e-11 71.2 45 77.8
Gohir.D13G117100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 6.1e-11 71.2 45 80.0
Nn4g25324 Nelumbo nucifera HOM05D003868 ORTHO05D005364 1.0e-10 70.5 45 80.0
PSO170G4013 Papaver somniferum HOM05D003868 ORTHO05D005364 1.0e-10 70.5 45 80.0
PSO357G0419 Papaver somniferum HOM05D003868 ORTHO05D005364 1.0e-10 70.5 45 80.0
PGR083G0274 Punica granatum HOM05D003868 ORTHO05D005364 1.0e-10 70.5 45 77.8
TAR633G1950 Trochodendron aralioides HOM05D003868 ORTHO05D005364 1.0e-10 70.5 45 80.0
EL10Ac6g15321 Beta vulgaris HOM05D003868 ORTHO05D005364 1.4e-10 70.1 45 77.8
CAN.G1248.3 Capsicum annuum HOM05D003868 ORTHO05D005364 1.4e-10 70.1 45 77.8
Gorai.013G171000 Gossypium raimondii HOM05D038555 ORTHO05D005364 1.4e-10 70.1 34 100.0
Manes.09G182200 Manihot esculenta HOM05D003868 ORTHO05D005364 1.4e-10 70.1 45 77.8
TAR362G1038 Trochodendron aralioides HOM05D003868 ORTHO05D005364 1.8e-10 69.7 45 77.8
Zm00001eb294290 Zea mays HOM05D003868 ORTHO05D005364 1.8e-10 69.7 45 77.8
Actinidia11698 Actinidia chinensis HOM05D003868 ORTHO05D005364 2.3e-10 69.3 45 75.6
Potri.013G000700 Populus trichocarpa HOM05D003868 ORTHO05D005364 2.3e-10 69.3 45 80.0
CARHR186910 Cardamine hirsuta HOM05D003868 ORTHO05D005364 3.0e-10 68.9 43 81.4
MD04G1184400 Malus domestica HOM05D003868 ORTHO05D005364 3.9e-10 68.6 43 81.4
Solyc01g102370.4 Solanum lycopersicum HOM05D003868 ORTHO05D005364 3.9e-10 68.6 45 75.6
Sopen01g044820 Solanum pennellii HOM05D003868 ORTHO05D005364 3.9e-10 68.6 45 75.6
Aa31LG11G9990 Aethionema arabicum HOM05D003868 ORTHO05D005364 6.7e-10 67.8 43 81.4
Gohir.A13G114100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 6.7e-10 67.8 45 75.6
Gorai.013G131700 Gossypium raimondii HOM05D003868 ORTHO05D005364 6.7e-10 67.8 45 77.8
Lj5C315T22 Lonicera japonica HOM05D003868 ORTHO05D005364 6.7e-10 67.8 45 75.6
Lalb_Chr02g0147421 Lupinus albus HOM05D003868 ORTHO05D005364 6.7e-10 67.8 45 77.8
Nitab4.5_0000541g0020 Nicotiana tabacum HOM05D003868 ORTHO05D005364 6.7e-10 67.8 45 75.6
Sabra13G0000600 Salix brachista HOM05D003868 ORTHO05D005364 6.7e-10 67.8 45 77.8
Os05g0540100 Oryza sativa ssp. japonica HOM05D003868 ORTHO05D005364 8.8e-10 67.4 45 75.6
Gorai.010G176300 Gossypium raimondii HOM05D003868 ORTHO05D036083 1.1e-09 67.0 34 94.1
BcaB04g19723 Brassica carinata HOM05D003868 ORTHO05D005364 1.5e-09 66.6 43 79.1
A06p36880 Brassica napus HOM05D003868 ORTHO05D005364 1.5e-09 66.6 43 79.1
C07p41620 Brassica napus HOM05D003868 ORTHO05D005364 1.5e-09 66.6 43 79.1
BolC7t44696H Brassica oleracea HOM05D003868 ORTHO05D005364 1.5e-09 66.6 43 79.1
BraA06t26613Z Brassica rapa HOM05D003868 ORTHO05D005364 1.5e-09 66.6 43 79.1
FvH4_6g08670 Fragaria vesca HOM05D003868 ORTHO05D005364 1.5e-09 66.6 45 73.3
FAN02G3718 Fragaria x ananassa HOM05D003868 ORTHO05D005364 1.5e-09 66.6 45 73.3
FAN09G4770 Fragaria x ananassa HOM05D003868 ORTHO05D005364 1.5e-09 66.6 45 73.3
Nitab4.5_0003511g0030 Nicotiana tabacum HOM05D003868 ORTHO05D005364 1.5e-09 66.6 45 73.3
Sp2g21320 Schrenkiella parvula HOM05D003868 ORTHO05D005364 1.5e-09 66.6 43 79.1
AL6G38510 Arabidopsis lyrata HOM05D003868 ORTHO05D005364 2.0e-09 66.2 43 79.1
AT5G26680 Arabidopsis thaliana HOM05D003868 ORTHO05D005364 2.0e-09 66.2 43 79.1
Carub.0006s2428 Capsella rubella HOM05D003868 ORTHO05D005364 2.0e-09 66.2 43 79.1
Thhalv10004386m.g Eutrema salsugineum HOM05D003868 ORTHO05D005364 2.0e-09 66.2 43 79.1
Lsat_1_v5_gn_7_23500 Lactuca sativa HOM05D003868 ORTHO05D005364 2.0e-09 66.2 45 73.3
Lalb_Chr06g0167231 Lupinus albus HOM05D003868 ORTHO05D005364 2.0e-09 66.2 45 75.6
HPP92_017212 Vanilla planifolia HOM05D003868 ORTHO05D005364 2.0e-09 66.2 45 75.6
Lj5g0001875 Lotus japonicus HOM05D003868 ORTHO05D005364 2.6e-09 65.9 45 73.3
BcaC03g17876 Brassica carinata HOM05D003868 ORTHO05D005364 3.3e-09 65.5 43 76.7
CSS0027931 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 4.4e-09 65.1 45 73.3
CSS0029807 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 4.4e-09 65.1 45 73.3
ECA236G4503 Erigeron canadensis HOM05D003868 ORTHO05D005364 4.4e-09 65.1 45 73.3
FAN05G2124 Fragaria x ananassa HOM05D003868 ORTHO05D005364 4.4e-09 65.1 45 71.1
HanXRQChr04g0116761 Helianthus annuus HOM05D003868 ORTHO05D005364 4.4e-09 65.1 45 73.3
Gohir.D13G164632 Gossypium hirsutum HOM05D022939 ORTHO05D218661 5.7e-09 64.7 31 100.0
SHI18007 Sapria himalayana HOM05D003868 ORTHO05D005364 5.7e-09 64.7 45 73.3
ATR0693G183 Amborella trichopoda HOM05D003868 ORTHO05D005364 7.4e-09 64.3 43 76.7
Ca_10214_v3 Cicer arietinum L. HOM05D003868 ORTHO05D005364 7.4e-09 64.3 45 73.3
DCAR_029304 Daucus carota HOM05D003868 ORTHO05D005364 9.7e-09 63.9 45 71.1
RcHm_v2.0_Chr3g0458811 Rosa chinensis HOM05D003868 ORTHO05D005364 9.7e-09 63.9 45 71.1
Migut.N00980 Erythranthe guttata HOM05D003868 ORTHO05D005364 1.3e-08 63.5 45 68.9
AagrBONN_evm.TU.Sc2ySwM_344.2826 Anthoceros agrestis HOM05D003868 ORTHO05D005364 2.2e-08 62.8 43 69.8
Pp3c11_1310 Physcomitrium patens HOM05D003868 ORTHO05D005364 2.2e-08 62.8 43 72.1
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 3.7e-08 62.0 30 96.7
PSO210G0203 Papaver somniferum HOM05D003868 ORTHO05D005364 3.7e-08 62.0 45 71.1
PSO761G0576 Papaver somniferum HOM05D003868 ORTHO05D005364 3.7e-08 62.0 45 71.1
MSTRG.5173 Avicennia marina HOM05D003868 ORTHO05D005364 4.8e-08 61.6 45 68.9
SEGI_17973 Sequoiadendron giganteum HOM05D003868 ORTHO05D005364 6.3e-08 61.2 44 70.5
Eucgr.B01348 Eucalyptus grandis HOM05D003868 ORTHO05D005364 8.2e-08 60.8 45 71.1
SalBow4G0333 Salvia bowleyana HOM05D003868 ORTHO05D005364 8.2e-08 60.8 43 72.1
Aqoxy2G02412 Aquilegia oxysepala HOM05D003868 ORTHO05D005364 1.8e-07 59.7 43 72.1
Mapoly0083s0081 Marchantia polymorpha HOM05D003868 ORTHO05D005364 2.4e-07 59.3 45 64.4
TPR.G34902 Trifolium pratense HOM05D003868 ORTHO05D005364 4.1e-07 58.5 45 66.7
Eucgr.J01445 Eucalyptus grandis HOM05D003868 ORTHO05D005364 7.0e-07 57.8 46 65.2
Eucgr.B01342 Eucalyptus grandis HOM05D003868 ORTHO05D005364 9.1e-07 57.4 48 62.5
Gorai.002G154800 Gossypium raimondii HOM05D038584 ORTHO05D047465 9.1e-07 57.4 29 96.6
Eucgr.B01326 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.2e-06 57.0 45 66.7
Eucgr.B01339 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.2e-06 57.0 45 66.7
Eucgr.B01834 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.2e-06 57.0 45 66.7
Medtr1g085130 Medicago truncatula HOM05D003868 ORTHO05D005364 1.5e-06 56.6 45 64.4
Psat6g156480 Pisum sativum HOM05D003868 ORTHO05D005364 1.5e-06 56.6 45 64.4
SGA_v2.0_scaffold5G02926 Striga asiatica HOM05D003868 ORTHO05D005364 2.0e-06 56.2 45 64.4
CDE09G0829 Ceratophyllum demersum HOM05D003868 ORTHO05D005364 2.6e-06 55.8 45 64.4
Eucgr.B01328 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.6e-06 55.8 48 58.3


User provided reference genes

Program Settings