Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-208 728.4 343 100.0
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.0e-164 581.3 410 73.7
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-160 569.3 390 74.6
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-151 540.0 388 71.6
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 2.4e-142 509.2 420 64.5
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 2.4e-142 509.2 410 63.4
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-132 476.1 356 69.1
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 1.4e-129 466.8 413 58.8
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 7.1e-126 454.5 416 57.0
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 9.6e-123 444.1 417 56.6
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 1.1e-121 440.7 415 54.9
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 2.2e-119 433.0 418 55.0
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 1.4e-118 430.3 415 55.7
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 5.5e-118 428.3 396 55.3
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 8.7e-116 421.0 391 55.8
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 1.1e-115 420.6 420 52.6
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 1.5e-115 420.2 416 54.1
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 2.5e-115 419.5 415 54.0
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 7.4e-115 417.9 416 54.3
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 2.1e-114 416.4 415 53.5
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 6.2e-114 414.8 416 52.2
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 6.2e-114 414.8 415 53.5
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 6.2e-114 414.8 412 52.2
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 8.2e-114 414.5 416 52.4
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 1.1e-113 414.1 416 52.4
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 4.0e-113 412.1 412 52.7
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 1.2e-112 410.6 396 52.3
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 1.2e-112 410.6 416 51.7
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 1.5e-112 410.2 423 51.8
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 2.0e-112 409.8 416 51.9
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 2.6e-112 409.5 416 52.2
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 1.7e-111 406.8 415 51.1
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 1.7e-111 406.8 415 51.6
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 2.9e-111 406.0 397 52.9
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 4.9e-111 405.2 412 51.7
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 1.4e-110 403.7 415 51.3
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 1.9e-110 403.3 412 52.2
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 2.5e-110 402.9 418 51.2
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 3.2e-110 402.5 417 50.6
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 5.5e-110 401.7 418 52.4
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 9.3e-110 401.0 412 52.4
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.2e-109 400.6 420 51.9
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 3.5e-109 399.1 396 51.5
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 7.9e-109 397.9 415 52.0
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 1.0e-108 397.5 416 51.0
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 1.0e-108 397.5 390 52.8
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 1.8e-108 396.7 416 51.0
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 5.1e-108 395.2 422 51.2
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 6.7e-108 394.8 419 51.8
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 6.7e-108 394.8 416 51.0
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 8.7e-108 394.4 397 52.9
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 3.3e-107 392.5 418 51.4
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 3.3e-107 392.5 396 50.8
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 3.3e-107 392.5 416 49.3
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 3.3e-107 392.5 417 51.1
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 4.3e-107 392.1 418 51.2
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 4.3e-107 392.1 397 52.4
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 9.7e-107 391.0 418 51.0
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 1.3e-106 390.6 397 52.4
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 2.2e-106 389.8 415 49.4
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 6.3e-106 388.3 425 49.2
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 8.2e-106 387.9 409 50.9
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.4e-105 387.1 418 50.2
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 1.8e-105 386.7 408 50.2
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 3.1e-105 386.0 415 49.4
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 3.1e-105 386.0 419 51.1
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 4.1e-105 385.6 419 50.4
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 6.9e-105 384.8 461 45.6
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 9.0e-105 384.4 416 51.0
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 1.2e-104 384.0 386 50.0
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 1.2e-104 384.0 416 51.0
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.0e-104 383.3 409 50.4
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 4.5e-104 382.1 419 50.4
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 5.9e-104 381.7 418 49.8
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 7.7e-104 381.3 415 48.9
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 2.5e-102 376.3 415 48.7
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 2.5e-102 376.3 398 48.5
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 2.5e-102 376.3 418 49.5
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 7.2e-102 374.8 389 49.4
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 1.2e-101 374.0 411 47.2
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.2e-101 374.0 336 56.0
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 1.6e-101 373.6 406 49.5
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 2.1e-101 373.2 348 53.7
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 7.9e-101 371.3 416 48.3
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 1.0e-100 370.9 416 48.1
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.0e-100 370.9 382 49.5
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 1.8e-100 370.2 418 49.0
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.8e-100 370.2 336 55.1
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 2.0e-99 366.7 391 49.1
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.3e-99 365.5 233 78.1
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 1.7e-98 363.6 303 59.4
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 9.1e-97 357.8 406 46.3
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.2e-96 357.5 395 50.4
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.1e-94 350.9 348 53.7
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 6.1e-93 345.1 383 50.7
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 7.9e-93 344.7 353 51.0
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.0e-89 331.6 246 68.3
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 1.0e-87 327.8 411 46.2
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 1.3e-87 327.4 329 50.5
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.4e-86 323.9 372 48.9
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 4.2e-86 322.4 372 47.8
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.0e-85 318.2 339 55.8
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 1.4e-84 317.4 355 47.3
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 1.5e-83 313.9 402 44.5
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 1.2e-80 304.3 420 41.2
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 5.9e-80 302.0 417 41.5
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.0e-79 301.2 422 41.2
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 3.8e-79 299.3 363 46.8
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 3.6e-77 292.7 384 43.0
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.0e-76 291.2 384 42.7
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 5.2e-76 288.9 280 53.6
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-73 280.8 190 73.2
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-70 270.8 190 71.6
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.5e-70 270.0 197 68.5
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 1.6e-69 267.3 350 44.0
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.8e-68 263.8 279 50.2
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 3.0e-68 263.1 360 42.8
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 5.2e-68 262.3 350 43.7
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 2.0e-67 260.4 336 44.3
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 1.7e-66 257.3 267 51.3
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 2.4e-65 253.4 453 35.5
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 5.4e-65 252.3 249 52.6
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-64 250.8 167 74.9
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 3.0e-60 236.5 283 42.0
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 1.3e-58 231.1 235 53.2
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 2.0e-56 223.8 424 34.7
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 4.0e-52 209.5 192 54.7
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 1.5e-51 207.6 192 54.2
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.3e-50 201.8 135 74.8
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 6.2e-45 185.7 167 57.5
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.2e-45 185.7 163 62.6
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 4.4e-43 179.5 296 34.5
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 5.4e-41 172.6 233 44.6
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-40 170.6 86 89.5
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-38 164.1 132 63.6
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-38 164.1 132 63.6
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-38 164.1 132 63.6
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.1e-37 160.6 405 31.4
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-37 160.6 132 62.9
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 3.7e-34 149.8 94 71.3
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.6e-32 142.9 140 60.0
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 9.6e-30 135.2 86 69.8
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 1.5e-27 127.9 84 67.9
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.4e-27 126.7 100 69.0
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.4e-25 121.3 100 56.0
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.6e-19 99.0 51 86.3
Gohir.D03G178375 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-18 98.2 83 67.5
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-17 95.1 66 71.2
Gohir.A03G000001 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.2e-17 93.6 54 90.7
Gohir.A10G243600 Gossypium hirsutum HOM05D004098 ORTHO05D005454 2.7e-16 90.5 54 87.0
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 1.1e-14 85.1 56 62.5
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 3.6e-13 80.1 71 50.7
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 5.4e-09 66.2 179 29.6
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.7e-08 63.9 43 62.8
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 2.3e-07 60.8 34 76.5
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 4.3e-06 56.6 36 72.2


User provided reference genes

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