Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G156950 Gossypium hirsutum HOM05D002628 ORTHO05D002785 1.0e-175 620.2 350 100.0
Gorai.001G187100 Gossypium raimondii HOM05D002628 ORTHO05D002785 1.9e-166 589.3 349 96.0
Gohir.D07G163200 Gossypium hirsutum HOM05D002628 ORTHO05D002785 4.6e-120 435.3 349 76.8
Duzib211G0579 Durio zibethinus HOM05D002628 ORTHO05D002785 1.0e-111 407.5 354 66.9
Thecc.01G224600 Theobroma cacao HOM05D002628 ORTHO05D002785 1.2e-101 374.0 355 66.8
COL.COLO4_15677 Corchorus olitorius HOM05D002628 ORTHO05D002785 2.8e-101 372.9 362 66.9
Duzib138G1695 Durio zibethinus HOM05D002628 ORTHO05D002785 6.2e-101 371.7 355 66.8
Duzib133G0258 Durio zibethinus HOM05D002628 ORTHO05D002785 1.0e-95 354.4 356 66.0
Gohir.A11G137900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 9.6e-94 347.8 355 63.4
Gohir.A08G194900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 6.2e-93 345.1 355 66.2
Gohir.D08G212600 Gossypium hirsutum HOM05D002628 ORTHO05D002785 4.0e-92 342.4 355 64.2
Gorai.007G155000 Gossypium raimondii HOM05D002628 ORTHO05D002785 6.9e-92 341.7 355 61.4
Gohir.D11G144700 Gossypium hirsutum HOM05D002628 ORTHO05D002785 4.4e-91 339.0 355 61.4
Gohir.D07G207400 Gossypium hirsutum HOM05D002628 ORTHO05D002785 9.3e-89 331.3 355 64.5
Gorai.001G233800 Gossypium raimondii HOM05D002628 ORTHO05D002785 9.3e-89 331.3 355 64.5
Gorai.004G226000 Gossypium raimondii HOM05D002628 ORTHO05D002785 4.6e-88 328.9 355 62.8
Gohir.A07G201100 Gossypium hirsutum HOM05D002628 ORTHO05D002785 7.3e-86 321.6 355 59.2
Ciclev10018446m.g Citrus clementina HOM05D002628 ORTHO05D002785 1.5e-83 313.9 355 56.1
Dinv12687 Davidia involucrata HOM05D002628 ORTHO05D002785 2.1e-77 293.5 346 54.6
Cfa002577 Carpinus fangiana HOM05D002628 ORTHO05D002785 3.8e-74 282.7 350 55.1
QL09p053994 Quercus lobata HOM05D002628 ORTHO05D002785 2.7e-72 276.6 349 51.6
Atru.chr5.2101 Acer truncatum HOM05D002628 ORTHO05D002785 1.5e-70 270.8 356 49.7
Dinv19196 Davidia involucrata HOM05D002628 ORTHO05D002785 1.6e-69 267.3 350 48.9
Manes.13G047100 Manihot esculenta HOM05D002628 ORTHO05D002785 2.1e-69 266.9 350 48.3
Manes.12G045400 Manihot esculenta HOM05D002628 ORTHO05D002785 1.7e-66 257.3 351 48.7
TWI75G1871 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 8.4e-66 255.0 353 49.0
TWI36G1593 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 1.4e-65 254.2 346 48.8
Potri.002G243350 Populus trichocarpa HOM05D002628 ORTHO05D002785 4.2e-65 252.7 355 45.9
CSS0050463 Camellia sinensis var. sinensis HOM05D002628 ORTHO05D002785 5.7e-62 242.3 361 49.3
CiPaw.04G105000 Carya illinoinensis HOM05D002628 ORTHO05D002785 3.7e-61 239.6 358 45.0
Potri.014G189900 Populus trichocarpa HOM05D002628 ORTHO05D002785 3.7e-61 239.6 354 46.6
Prupe.8G201800 Prunus persica HOM05D002628 ORTHO05D002785 6.3e-61 238.8 362 47.0
Sabra14G0142700 Salix brachista HOM05D002628 ORTHO05D002785 2.4e-60 236.9 352 45.5
FvH4_2g18860 Fragaria vesca HOM05D002628 ORTHO05D002785 6.9e-60 235.3 361 47.1
MD05G1174400 Malus domestica HOM05D002628 ORTHO05D002785 6.9e-60 235.3 363 46.8
TAR633G2086 Trochodendron aralioides HOM05D002628 ORTHO05D002785 3.4e-59 233.0 351 48.1
FAN24G2878 Fragaria x ananassa HOM05D002628 ORTHO05D002785 4.5e-59 232.6 362 46.7
CiPaw.03G148700 Carya illinoinensis HOM05D002628 ORTHO05D002785 1.3e-58 231.1 351 43.3
CANSAT01G2524 Cannabis sativa HOM05D002628 ORTHO05D002785 1.7e-58 230.7 349 47.9
TWI18G0012 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 3.8e-58 229.6 354 46.3
RcHm_v2.0_Chr6g0284671 Rosa chinensis HOM05D002628 ORTHO05D002785 1.9e-57 227.3 362 46.1
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 5.5e-57 225.7 341 44.9
FAN27G0734 Fragaria x ananassa HOM05D002628 ORTHO05D002785 9.4e-57 224.9 361 45.7
CSS0031811 Camellia sinensis var. sinensis HOM05D002628 ORTHO05D002785 6.7e-55 218.8 355 46.8
TAR362G0009 Trochodendron aralioides HOM05D002628 ORTHO05D002785 1.1e-54 218.0 349 46.4
MD10G1163500 Malus domestica HOM05D002628 ORTHO05D002785 2.5e-54 216.9 359 45.7
Actinidia37601 Actinidia chinensis HOM05D002628 ORTHO05D002785 5.7e-54 215.7 346 45.1
Actinidia09479 Actinidia chinensis HOM05D002628 ORTHO05D002785 2.2e-50 203.8 354 48.3
Haze_24810 Corylus avellana HOM05D002628 ORTHO05D002785 8.5e-50 201.8 255 48.6
Lalb_Chr19g0125651 Lupinus albus HOM05D002628 ORTHO05D002785 2.7e-48 196.8 341 41.9
Actinidia23721 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.0e-47 194.9 352 46.3
Phvul.008G126600 Phaseolus vulgaris HOM05D002628 ORTHO05D002785 3.0e-47 193.4 352 41.8
arahy.Tifrunner.gnm1.ann1.23VDWQ Arachis hypogaea HOM05D002628 ORTHO05D002785 5.7e-46 189.1 347 43.2
arahy.Tifrunner.gnm1.ann1.82MK2E Arachis hypogaea HOM05D002628 ORTHO05D002785 1.4e-44 184.5 344 42.7
CsaV3_7G026060 Cucumis sativus L. HOM05D002628 ORTHO05D002785 2.4e-44 183.7 349 41.5
VMungo1383G0087 Vigna mungo HOM05D002628 ORTHO05D002785 7.0e-44 182.2 349 41.0
Aqoxy6G02008 Aquilegia oxysepala HOM05D002628 ORTHO05D002785 2.2e-42 177.2 350 41.7
MELO3C021029.2 Cucumis melo HOM05D002628 ORTHO05D002785 5.0e-42 176.0 353 39.7
Ca_26871_v3 Cicer arietinum L. HOM05D002628 ORTHO05D002785 6.5e-42 175.6 345 38.6
Actinidia39763 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.4e-41 174.5 351 45.6
Glyma.08G352600 Glycine max HOM05D002628 ORTHO05D002785 4.2e-41 172.9 349 40.7
Lj1g0019543 Lotus japonicus HOM05D002628 ORTHO05D002785 3.0e-39 166.8 343 41.4
Psat3g145600 Pisum sativum HOM05D002628 ORTHO05D002785 5.7e-38 162.5 335 35.8
Lalb_Chr01g0022291 Lupinus albus HOM05D002628 ORTHO05D002785 7.4e-38 162.2 348 36.2
Lalb_Chr03g0041701 Lupinus albus HOM05D002628 ORTHO05D002785 6.3e-37 159.1 350 36.9
EL10Ac7g17849 Beta vulgaris HOM05D002628 ORTHO05D002785 1.1e-36 158.3 350 42.9
Sed0013250 Sechium edule HOM05D002628 ORTHO05D002785 1.1e-36 158.3 352 37.8
Nitab4.5_0000045g0240 Nicotiana tabacum HOM05D002628 ORTHO05D002785 2.4e-36 157.1 337 43.3
AUR62001094 Chenopodium quinoa HOM05D002628 ORTHO05D002785 4.1e-36 156.4 356 40.2
Aa31LG8G11310 Aethionema arabicum HOM05D002628 ORTHO05D002785 3.5e-35 153.3 358 40.5
Glyma.18G169600 Glycine max HOM05D002628 ORTHO05D002785 3.5e-35 153.3 348 38.8
Nitab4.5_0003758g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 5.9e-35 152.5 337 46.0
Medtr7g056603 Medicago truncatula HOM05D002628 ORTHO05D002785 2.9e-34 150.2 347 35.7
MSTRG.12779 Avicennia marina HOM05D002628 ORTHO05D002785 3.8e-34 149.8 347 42.1
PGSC0003DMG400017665 Solanum tuberosum HOM05D002628 ORTHO05D002785 5.0e-34 149.4 357 35.0
Lj3g0004121 Lotus japonicus HOM05D002628 ORTHO05D002785 8.5e-34 148.7 342 39.8
AUR62008919 Chenopodium quinoa HOM05D002628 ORTHO05D002785 9.4e-33 145.2 356 36.2
CARHR218580 Cardamine hirsuta HOM05D002628 ORTHO05D002785 1.2e-32 144.8 352 35.5
Nn1g07877 Nelumbo nucifera HOM05D002628 ORTHO05D002785 1.6e-32 144.4 353 34.3
Sopen09g023690 Solanum pennellii HOM05D002628 ORTHO05D002785 3.6e-32 143.3 357 34.5
Oeu004073.1 Olea europaea HOM05D002628 ORTHO05D002785 4.7e-32 142.9 288 38.9
Hund18389 Selenicereus undatus HOM05D002628 ORTHO05D002785 8.0e-32 142.1 350 35.7
Solyc09g060080.4 Solanum lycopersicum HOM05D002628 ORTHO05D002785 8.0e-32 142.1 343 35.0
TPR.G31107 Trifolium pratense HOM05D002628 ORTHO05D002785 2.3e-31 140.6 341 39.0
Glyma.03G081300 Glycine max HOM05D002628 ORTHO05D002785 3.0e-31 140.2 346 37.9
MSTRG.18000 Avicennia marina HOM05D002628 ORTHO05D002785 8.8e-31 138.7 345 40.9
Eucgr.H00795 Eucalyptus grandis HOM05D002628 ORTHO05D002785 8.8e-31 138.7 341 36.1
Carub.0003s2528 Capsella rubella HOM05D002628 ORTHO05D002785 1.5e-30 137.9 335 36.4
Carub.0003s2526 Capsella rubella HOM05D002628 ORTHO05D002785 2.0e-30 137.5 335 35.8
AL3G40640 Arabidopsis lyrata HOM05D002628 ORTHO05D002785 4.4e-30 136.3 337 39.8
Actinidia39759 Actinidia chinensis HOM05D002628 ORTHO05D002785 9.7e-30 135.2 313 43.8
Hund05562 Selenicereus undatus HOM05D002628 ORTHO05D002785 9.7e-30 135.2 347 36.9
Actinidia28152 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.3e-29 134.8 239 51.5
AT3G24870 Arabidopsis thaliana HOM05D002628 ORTHO05D002785 1.7e-29 134.4 330 36.7
Rhsim01G0255500 Rhododendron simsii HOM05D002628 ORTHO05D002785 1.7e-29 134.4 325 38.2
AT3G24880 Arabidopsis thaliana HOM05D002628 ORTHO05D002785 2.8e-29 133.7 330 36.7
Sed0004451 Sechium edule HOM05D002628 ORTHO05D002785 2.8e-29 133.7 255 41.2
VMungo0331G0007 Vigna mungo HOM05D002628 ORTHO05D002785 2.4e-28 130.6 347 38.9
vmacro14750 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 4.1e-28 129.8 324 39.5
Sp3g22600 Schrenkiella parvula HOM05D002628 ORTHO05D002785 7.0e-28 129.0 341 41.9
SpUn0027_0080 Schrenkiella parvula HOM05D002628 ORTHO05D002785 7.0e-28 129.0 341 41.9
BolC7t41583H Brassica oleracea HOM05D002628 ORTHO05D002785 2.7e-27 127.1 339 40.1
Oeu022247.1 Olea europaea HOM05D002628 ORTHO05D002785 4.5e-27 126.3 349 33.8
C07p11110 Brassica napus HOM05D002628 ORTHO05D002785 5.9e-27 125.9 341 40.5
SalBow3G0995 Salvia bowleyana HOM05D002628 ORTHO05D002785 1.3e-26 124.8 345 40.6
PSO675G2169 Papaver somniferum HOM05D002628 ORTHO05D002785 3.8e-26 123.2 360 33.9
BraA07t28522Z Brassica rapa HOM05D002628 ORTHO05D002785 5.0e-26 122.9 337 40.1
Peaxi162Scf00517g00636 Petunia axillaris HOM05D002628 ORTHO05D002785 8.5e-26 122.1 331 30.5
A07p07330 Brassica napus HOM05D002628 ORTHO05D002785 1.1e-25 121.7 337 40.1
Phvul.010G018800 Phaseolus vulgaris HOM05D002628 ORTHO05D002785 1.1e-25 121.7 348 33.0
BcaC06g35765 Brassica carinata HOM05D002628 ORTHO05D002785 3.2e-25 120.2 341 39.6
Nitab4.5_0001564g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 2.1e-24 117.5 328 32.3
THA.LOC104821651 Tarenaya hassleriana HOM05D002628 ORTHO05D002785 6.1e-24 115.9 342 38.3
BcaB06g26704 Brassica carinata HOM05D002628 ORTHO05D002785 8.0e-24 115.5 334 38.3
Sc05g0002110 Simmondsia chinensis HOM05D002628 ORTHO05D002785 1.4e-23 114.8 347 35.4
PGR083G0125 Punica granatum HOM05D002628 ORTHO05D002785 2.3e-23 114.0 346 35.0
CARHR101290 Cardamine hirsuta HOM05D002628 ORTHO05D002785 2.6e-22 110.5 341 38.1
Nitab4.5_0002223g0030 Nicotiana tabacum HOM05D002628 ORTHO05D002785 4.4e-22 109.8 329 31.3
A03p43970 Brassica napus HOM05D002628 ORTHO05D002785 2.2e-21 107.5 336 35.7
BraA03t13528Z Brassica rapa HOM05D002628 ORTHO05D002785 2.2e-21 107.5 336 35.7
CAN.G771.81 Capsicum annuum HOM05D002628 ORTHO05D002785 1.4e-20 104.8 344 31.1
Aa31LG9G4800 Aethionema arabicum HOM05D002628 ORTHO05D002785 4.1e-20 103.2 352 36.1
Psat0s1614g0080 Pisum sativum HOM05D002628 ORTHO05D002785 4.5e-19 99.8 170 41.2
AL9U11010 Arabidopsis lyrata HOM05D002628 ORTHO05D002785 7.7e-19 99.0 349 30.4
vmacro02763 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 7.7e-19 99.0 238 33.6
BcaC01g03251 Brassica carinata HOM05D002628 ORTHO05D002785 1.7e-18 97.8 300 35.3
Lj1A87T37 Lonicera japonica HOM05D002628 ORTHO05D002785 2.9e-18 97.1 347 32.0
Ah.15g093990 Amaranthus hybridus HOM05D002628 ORTHO05D002785 3.8e-18 96.7 250 34.4
BolC3t17718H Brassica oleracea HOM05D002628 ORTHO05D002785 5.0e-18 96.3 299 34.8
C03p54320 Brassica napus HOM05D002628 ORTHO05D002785 1.1e-17 95.1 299 34.8
Thhalv10002368m.g Eutrema salsugineum HOM05D002628 ORTHO05D002785 2.5e-17 94.0 340 35.3
BcaB08g34428 Brassica carinata HOM05D002628 ORTHO05D002785 3.3e-17 93.6 342 37.4
SalBow6G2694 Salvia bowleyana HOM05D002628 ORTHO05D002785 3.3e-17 93.6 291 32.0
Glyma.16G093800 Glycine max HOM05D002628 ORTHO05D002785 1.6e-16 91.3 185 37.8
Glyma.18G167833 Glycine max HOM05D002628 ORTHO05D002785 6.1e-16 89.4 205 39.5
GSVIVG01028685001 Vitis vinifera HOM05D002628 ORTHO05D002785 1.2e-14 85.1 187 36.9
SHI31150 Sapria himalayana HOM05D002628 ORTHO05D002785 1.5e-14 84.7 329 34.7
BcaB03g16110 Brassica carinata HOM05D002628 ORTHO05D002785 2.6e-14 84.0 329 31.0
Eucgr.K02162 Eucalyptus grandis HOM05D002628 ORTHO05D002785 2.6e-14 84.0 353 33.7
Migut.D02520 Erythranthe guttata HOM05D002628 ORTHO05D002785 4.4e-14 83.2 334 37.4
DCAR_012651 Daucus carota HOM05D002628 ORTHO05D002785 2.8e-13 80.5 267 33.7
Oeu023092.1 Olea europaea HOM05D002628 ORTHO05D002785 1.1e-12 78.6 178 41.0
Lj2C1130G3 Lonicera japonica HOM05D002628 ORTHO05D002785 9.2e-12 75.5 296 32.4
Rhsim13G0045600 Rhododendron simsii HOM05D002628 ORTHO05D002785 2.7e-11 73.9 191 35.6
Cpa.g.sc8.144 Carica papaya HOM05D002628 ORTHO05D002785 5.9e-11 72.8 100 71.0
CAN.G15.8 Capsicum annuum HOM05D002628 ORTHO05D002785 2.9e-10 70.5 135 36.3
SalBow6G7039 Salvia bowleyana HOM05D002628 ORTHO05D002785 8.6e-10 68.9 284 26.4
C04p42820 Brassica napus HOM05D002628 ORTHO05D002785 3.3e-09 67.0 321 29.0
BolC4t25848H Brassica oleracea HOM05D002628 ORTHO05D002785 3.3e-09 67.0 324 29.0
BcaC02g09445 Brassica carinata HOM05D002628 ORTHO05D002785 1.2e-08 65.1 321 28.0
A04p08930 Brassica napus HOM05D002628 ORTHO05D002785 4.7e-08 63.2 322 28.9
CDE04G0039 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 1.8e-07 61.2 298 23.8
Cpa.g.sc8.145 Carica papaya HOM05D002628 ORTHO05D002785 8.9e-07 58.9 59 61.0


User provided reference genes

Program Settings