Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.7e-120 436.0 219 100.0
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-119 433.3 219 99.5
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-119 433.3 219 99.5
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-119 433.3 219 99.5
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.1e-119 431.4 219 99.1
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.1e-119 431.4 219 99.1
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.1e-119 431.4 219 99.1
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-118 429.5 219 98.6
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-118 429.5 219 98.6
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.3e-117 426.4 219 97.7
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-117 424.5 219 97.7
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 9.9e-97 357.1 219 81.3
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.7e-96 355.1 198 92.4
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.7e-88 329.7 204 80.4
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 7.1e-87 324.3 216 74.1
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 7.8e-86 320.9 220 73.6
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-85 320.1 165 97.6
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 7.3e-84 314.3 220 72.3
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.3e-83 313.5 221 71.0
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 2.6e-81 305.8 220 71.4
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 9.9e-81 303.9 220 71.4
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.3e-80 303.5 220 70.0
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 8.4e-80 300.8 221 70.6
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 9.3e-79 297.4 220 67.3
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-77 293.5 152 98.0
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.3e-77 293.5 220 66.4
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.7e-77 293.1 220 69.1
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-76 290.4 147 99.3
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 4.3e-76 288.5 220 67.3
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 5.6e-76 288.1 220 64.1
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 5.6e-76 288.1 221 67.0
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 7.4e-76 287.7 220 66.4
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 2.1e-75 286.2 220 67.3
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 6.2e-75 284.6 220 68.2
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.1e-74 283.9 221 65.2
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.5e-73 280.0 221 64.3
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 2.6e-73 279.3 220 67.3
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 5.8e-73 278.1 223 64.6
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.3e-72 276.9 224 63.8
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 1.3e-72 276.9 225 63.6
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.3e-72 276.9 220 65.5
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 1.7e-72 276.6 224 63.4
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 2.9e-72 275.8 221 64.3
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 3.8e-72 275.4 224 61.6
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 6.4e-72 274.6 225 62.7
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 6.4e-72 274.6 222 63.5
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 1.1e-71 273.9 220 62.3
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 1.1e-71 273.9 223 64.1
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 1.1e-71 273.9 224 63.4
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.4e-71 273.5 221 64.3
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 1.4e-71 273.5 224 62.9
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 1.9e-71 273.1 225 62.7
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 4.2e-71 271.9 215 62.8
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 7.1e-71 271.2 220 61.4
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 7.1e-71 271.2 249 59.0
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 1.2e-70 270.4 224 62.5
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 2.1e-70 269.6 219 62.1
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 2.7e-70 269.2 220 60.0
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 7.9e-70 267.7 225 62.2
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 2.3e-69 266.2 220 59.5
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 5.1e-69 265.0 223 59.6
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 6.7e-69 264.6 223 64.6
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 8.7e-69 264.2 220 59.5
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 8.7e-69 264.2 218 65.6
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 2.5e-68 262.7 223 59.2
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 4.3e-68 261.9 222 63.1
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 4.3e-68 261.9 220 64.1
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 5.6e-68 261.5 223 64.6
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 7.4e-68 261.2 219 59.4
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 9.6e-68 260.8 223 58.7
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.7e-67 258.8 223 59.6
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 8.1e-67 257.7 220 62.7
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 4.0e-66 255.4 221 64.3
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 1.5e-65 253.4 219 58.4
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 2.0e-65 253.1 220 61.4
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 2.6e-65 252.7 219 58.0
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 2.6e-65 252.7 220 60.5
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 7.6e-65 251.1 220 62.3
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 1.3e-64 250.4 219 57.5
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.3e-64 250.4 219 58.0
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.7e-64 250.0 219 57.5
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 1.7e-64 250.0 219 60.7
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 2.9e-64 249.2 222 61.3
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 3.8e-64 248.8 219 57.1
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 3.8e-64 248.8 219 57.1
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 6.5e-64 248.1 219 57.1
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 6.5e-64 248.1 219 57.5
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 8.4e-64 247.7 220 60.0
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.9e-63 246.5 219 56.6
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 5.5e-63 245.0 215 60.5
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 1.6e-62 243.4 219 55.7
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 6.0e-62 241.5 227 55.1
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 3.0e-61 239.2 183 67.8
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 3.9e-61 238.8 207 60.9
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 5.1e-61 238.4 233 54.1
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 9.6e-60 234.2 191 63.9
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.3e-59 233.8 210 61.0
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 1.3e-59 233.8 220 59.5
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.3e-59 233.8 236 58.1
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 3.7e-59 232.3 220 56.8
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 4.8e-59 231.9 232 56.5
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.4e-58 230.3 220 57.3
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 1.4e-58 230.3 233 50.6
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 3.1e-58 229.2 230 56.1
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 9.0e-58 227.6 266 50.0
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 1.5e-57 226.9 223 57.0
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 2.6e-57 226.1 230 55.7
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 4.5e-57 225.3 220 56.8
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 1.7e-56 223.4 257 53.3
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.8e-56 222.2 189 64.0
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 5.0e-56 221.9 220 56.4
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.5e-55 219.5 194 60.3
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 5.5e-55 218.4 205 57.1
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 5.5e-55 218.4 196 60.7
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 3.6e-54 215.7 256 51.2
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 7.9e-54 214.5 277 49.8
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.3e-53 213.0 223 55.2
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 6.7e-53 211.5 138 79.7
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 4.3e-52 208.8 347 38.6
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 2.2e-51 206.5 217 53.0
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.7e-48 196.8 217 54.8
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 3.8e-48 195.7 197 55.3
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 1.2e-46 190.7 209 53.1
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.6e-46 190.3 170 60.6
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.8e-45 186.8 190 57.9
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 6.7e-45 184.9 178 58.4
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 2.0e-44 183.3 148 65.5
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 3.4e-41 172.6 134 71.6
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 5.2e-37 158.7 175 54.3
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 2.0e-36 156.8 134 63.4
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.7e-35 153.7 145 59.3
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 2.2e-35 153.3 154 57.1
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 8.2e-35 151.4 124 63.7
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 1.2e-33 147.5 167 54.5
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 1.5e-31 140.6 96 77.1
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.0e-28 130.2 95 67.4
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 2.4e-26 123.2 184 40.8
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 1.1e-23 114.4 181 38.7
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 4.2e-23 112.5 182 37.4
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 7.2e-23 111.7 127 49.6
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 1.8e-21 107.1 112 55.4
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 6.8e-21 105.1 94 59.6
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 2.9e-16 89.7 150 40.7
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 3.8e-16 89.4 178 32.0
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 8.5e-16 88.2 68 54.4
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 1.9e-15 87.0 94 51.1
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 3.6e-14 82.8 94 48.9
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.0e-12 77.0 63 57.1
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.3e-11 74.3 137 38.0
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 7.0e-10 68.6 50 62.0
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 6.1e-06 55.5 158 27.8
arahy.Tifrunner.gnm1.ann1.6AA68Y Arachis hypogaea HOM05D001355 ORTHO05D006435 8.0e-06 55.1 51 58.8


User provided reference genes

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