Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.4e-149 530.4 250 100.0
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-134 483.4 250 92.8
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-130 469.9 259 89.2
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-108 396.4 205 91.2
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.6e-104 381.3 205 88.3
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.9e-102 374.0 190 92.6
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-98 363.2 184 94.0
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-98 363.2 184 94.0
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-98 363.2 184 94.0
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-97 360.1 190 91.1
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-97 359.8 184 93.5
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 3.0e-97 359.0 202 83.7
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 5.1e-97 358.2 197 85.8
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 8.9e-94 347.4 202 80.7
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 1.2e-93 347.1 202 79.2
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 2.4e-91 339.3 202 78.7
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 3.2e-91 339.0 202 78.7
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 1.2e-90 337.0 202 78.2
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 1.6e-90 336.7 202 76.7
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 1.6e-90 336.7 202 78.2
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 1.7e-89 333.2 202 77.2
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 2.3e-89 332.8 202 76.2
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 5.1e-89 331.6 202 75.2
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-88 330.5 178 87.1
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 3.3e-88 328.9 202 75.2
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 4.3e-88 328.6 202 75.2
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 4.3e-88 328.6 197 79.7
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 4.3e-88 328.6 208 75.5
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 9.6e-88 327.4 207 74.4
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 2.1e-87 326.2 202 75.2
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 2.8e-87 325.9 202 75.2
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 4.7e-87 325.1 202 73.8
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 1.8e-86 323.2 203 74.4
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 3.1e-86 322.4 202 73.8
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 4.0e-86 322.0 202 74.3
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 5.2e-86 321.6 198 78.3
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 5.2e-86 321.6 202 75.2
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 5.2e-86 321.6 202 73.3
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 6.9e-86 321.2 202 73.8
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 6.9e-86 321.2 209 74.6
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 6.9e-86 321.2 202 73.8
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 6.9e-86 321.2 196 76.5
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 8.9e-86 320.9 202 74.8
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 8.9e-86 320.9 202 72.8
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 1.2e-85 320.5 202 74.3
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 2.0e-85 319.7 202 73.3
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 2.0e-85 319.7 198 77.8
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.6e-85 319.3 198 74.7
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 2.6e-85 319.3 202 72.8
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 3.4e-85 318.9 212 73.6
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 3.4e-85 318.9 202 72.3
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 4.4e-85 318.5 209 74.2
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 4.4e-85 318.5 210 74.3
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 5.8e-85 318.2 198 76.8
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 9.9e-85 317.4 210 73.8
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 1.3e-84 317.0 202 72.8
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 2.9e-84 315.8 200 72.0
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 3.8e-84 315.5 210 73.8
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 4.9e-84 315.1 202 74.3
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 6.4e-84 314.7 202 72.8
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 8.4e-84 314.3 202 71.8
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 8.4e-84 314.3 202 73.3
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 8.4e-84 314.3 209 73.2
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 1.4e-83 313.5 202 72.3
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 1.9e-83 313.2 202 73.3
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 3.2e-83 312.4 208 71.2
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 4.2e-83 312.0 202 72.8
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 4.2e-83 312.0 202 72.8
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 5.4e-83 311.6 202 70.3
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.2e-82 310.5 231 64.9
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 1.6e-82 310.1 208 69.7
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 1.6e-82 310.1 197 72.1
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 2.1e-82 309.7 203 69.5
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 7.8e-82 307.8 202 71.8
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 7.8e-82 307.8 202 69.3
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 7.8e-82 307.8 202 70.3
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.0e-81 307.4 202 71.3
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 1.0e-81 307.4 202 71.8
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 6.6e-81 304.7 202 71.3
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 1.5e-80 303.5 208 67.3
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.5e-80 303.5 202 68.8
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.5e-80 303.5 202 69.8
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 1.9e-80 303.1 203 70.0
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 2.5e-80 302.8 201 73.1
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 2.5e-80 302.8 201 73.1
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 2.5e-80 302.8 202 70.3
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 3.3e-80 302.4 205 67.8
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 9.6e-80 300.8 190 72.1
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 2.1e-79 299.7 208 67.3
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 2.1e-79 299.7 197 71.1
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 2.8e-79 299.3 202 67.8
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 4.8e-79 298.5 202 67.8
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 6.2e-79 298.1 202 67.8
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 8.1e-79 297.7 198 71.2
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.4e-78 297.0 198 69.7
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.4e-78 297.0 202 68.8
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 6.9e-78 294.7 194 69.1
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 9.0e-78 294.3 197 67.5
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.3e-76 290.4 198 68.2
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 1.3e-76 290.4 207 64.7
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 4.9e-76 288.5 237 61.6
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 7.1e-75 284.6 201 68.7
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 1.5e-72 276.9 200 64.0
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 1.9e-72 276.6 194 66.5
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 9.6e-72 274.2 167 78.4
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 4.8e-71 271.9 202 59.9
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.4e-70 269.6 190 71.6
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 2.6e-69 266.2 198 62.1
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 5.8e-69 265.0 198 62.1
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 1.3e-68 263.8 205 60.0
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 2.2e-68 263.1 209 57.9
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 3.2e-67 259.2 204 58.8
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 1.0e-65 254.2 156 75.0
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.9e-65 252.3 161 73.3
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.9e-65 252.3 161 73.3
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 8.7e-65 251.1 199 63.8
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 1.4e-62 243.8 195 54.4
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 3.8e-60 235.7 155 69.0
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 2.5e-59 233.0 144 74.3
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 4.2e-59 232.3 146 75.3
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 9.3e-59 231.1 165 66.1
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 8.7e-57 224.6 155 69.7
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 3.1e-54 216.1 140 72.1
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 1.5e-53 213.8 142 69.7
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.0e-53 213.4 169 62.1
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 3.8e-52 209.1 228 46.5
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.1e-50 201.8 168 64.3
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-48 197.6 138 70.3
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-47 193.4 100 92.0
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 6.3e-47 191.8 208 49.0
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.5e-45 187.2 205 44.4
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-44 184.1 96 88.5
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.8e-44 182.6 103 86.4
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 2.3e-41 173.3 114 72.8
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.3e-39 167.5 108 71.3
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.2e-39 166.8 165 51.5
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 3.7e-39 166.0 113 68.1
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 2.0e-37 160.2 164 49.4
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 2.6e-32 143.3 108 63.0
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 1.1e-30 137.9 86 70.9
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-28 131.0 74 82.4
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 1.1e-27 127.9 84 67.9
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 7.7e-13 78.6 54 68.5
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 6.3e-07 58.9 43 60.5


User provided reference genes

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