Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049411 Gossypium hirsutum HOM05D000207 ORTHO05D004956 4.3e-62 241.1 119 100.0
C07p14090 Brassica napus HOM05D000207 ORTHO05D004956 6.3e-21 104.4 58 86.2
arahy.Tifrunner.gnm1.ann1.AU04TH Arachis hypogaea HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
arahy.Tifrunner.gnm1.ann1.DCT04E Arachis hypogaea HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Cpa.g.c34811.1 Carica papaya HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Ciclev10006856m.g Citrus clementina HOM05D000207 ORTHO05D004956 5.3e-20 101.3 48 95.8
Ciclev10013219m.g Citrus clementina HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Cc03_g05640 Coffea canephora HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
COL.COLO4_26870 Corchorus olitorius HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Duzib235G1015 Durio zibethinus HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Glyma.18G132700 Glycine max HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Gohir.A05G111600 Gossypium hirsutum HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Gohir.D05G112000 Gossypium hirsutum HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Gorai.009G116200 Gossypium raimondii HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Manes.15G041801 Manihot esculenta HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Mapoly0001s0403 Marchantia polymorpha HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Nn1g06872 Nelumbo nucifera HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Oeu005091.1 Olea europaea HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Os08g0444100 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Phvul.003G055200 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Potri.008G168000 Populus trichocarpa HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Sabra08G0128000 Salix brachista HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Sabra10G0036900 Salix brachista HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
SMO232G0034 Selaginella moellendorffii HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
Thecc.06G005500 Theobroma cacao HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
VMungo1127G0964 Vigna mungo HOM05D000207 ORTHO05D004956 5.3e-20 101.3 47 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2015 Anthoceros agrestis HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
Aqoxy1G01024 Aquilegia oxysepala HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
EL10Ac3g04993 Beta vulgaris HOM05D000001 ORTHO05D000003 6.9e-20 100.9 47 97.9
CSS0020261 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
CANSAT54G2786 Cannabis sativa HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
CANSAT78G1427 Cannabis sativa HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
CiPaw.01G183100 Carya illinoinensis HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
CDE06G2823 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
MELO3C006416.2 Cucumis melo HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
MELO3C007190.2 Cucumis melo HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
CsaV3_3G012020 Cucumis sativus L. HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
Dinv27061 Davidia involucrata HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
Duzib043G0002 Durio zibethinus HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
Duzib160G0169 Durio zibethinus HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
PSO170G5684 Papaver somniferum HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
PSO198G0064 Papaver somniferum HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
PSO210G1216 Papaver somniferum HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
PSO210G6748 Papaver somniferum HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
PGR031G0434 Punica granatum HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
QL06p018332 Quercus lobata HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
Hund03049 Selenicereus undatus HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
TWI53G1374 Tripterygium wilfordii HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
HPP92_005064 Vanilla planifolia HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
GSVIVG01027834001 Vitis vinifera HOM05D000207 ORTHO05D004956 6.9e-20 100.9 47 97.9
Ca_08207_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004956 9.0e-20 100.5 47 97.9
ClCG01G024000 Citrullus lanatus HOM05D000207 ORTHO05D004956 9.0e-20 100.5 51 90.2
Lalb_Chr02g0158811 Lupinus albus HOM05D000207 ORTHO05D004956 9.0e-20 100.5 47 97.9
Medtr3g019300 Medicago truncatula HOM05D000207 ORTHO05D004956 9.0e-20 100.5 47 97.9
Medtr3g019310 Medicago truncatula HOM05D000207 ORTHO05D004956 9.0e-20 100.5 47 97.9
Medtr8g062750 Medicago truncatula HOM05D000207 ORTHO05D004956 9.0e-20 100.5 47 97.9
Psat4g126040 Pisum sativum HOM05D000207 ORTHO05D004956 9.0e-20 100.5 47 97.9
Psat6g018880 Pisum sativum HOM05D000207 ORTHO05D004956 9.0e-20 100.5 47 97.9
arahy.Tifrunner.gnm1.ann1.Q94Q39 Arachis hypogaea HOM05D000677 ORTHO05D000727 1.2e-19 100.1 58 84.5
BraA04t16461Z Brassica rapa HOM05D000207 ORTHO05D000606 1.2e-19 100.1 80 66.2
CiPaw.02G111100 Carya illinoinensis HOM05D000207 ORTHO05D004956 1.2e-19 100.1 47 95.7
CBR_g8906 Chara braunii HOM05D000207 ORTHO05D004956 1.2e-19 100.1 47 97.9
DCAR_024259 Daucus carota HOM05D000207 ORTHO05D004956 1.2e-19 100.1 47 95.7
ECA232G2626 Erigeron canadensis HOM05D000207 ORTHO05D004956 1.2e-19 100.1 47 95.7
ECA240G3918 Erigeron canadensis HOM05D000207 ORTHO05D004956 1.2e-19 100.1 47 95.7
Lsat_1_v5_gn_3_117461 Lactuca sativa HOM05D000207 ORTHO05D004956 1.2e-19 100.1 47 95.7
Os08g0278966 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 1.2e-19 100.1 47 97.9
Potri.010G070500 Populus trichocarpa HOM05D000207 ORTHO05D004956 1.2e-19 100.1 47 97.9
VMungo0251G1197 Vigna mungo HOM05D000207 ORTHO05D004956 1.2e-19 100.1 47 97.9
Atru.chr4.2043 Acer truncatum HOM05D000207 ORTHO05D004956 1.5e-19 99.8 47 97.9
Atru.chr4.2046 Acer truncatum HOM05D000207 ORTHO05D004956 1.5e-19 99.8 47 97.9
C04p41370 Brassica napus HOM05D000207 ORTHO05D000606 1.5e-19 99.8 61 78.7
Eucgr.E04319 Eucalyptus grandis HOM05D000207 ORTHO05D004956 1.5e-19 99.8 47 97.9
Prupe.4G214000 Prunus persica HOM05D000207 ORTHO05D004956 1.5e-19 99.8 47 95.7
TAR365G0659 Trochodendron aralioides HOM05D000207 ORTHO05D004956 1.5e-19 99.8 47 95.7
AL7G41900 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 97.9
AT4G14342 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 97.9
BcaC02g09324 Brassica carinata HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 97.9
BcaC06g35508 Brassica carinata HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 97.9
A04p07690 Brassica napus HOM05D000207 ORTHO05D000606 2.0e-19 99.4 47 97.9
A07p09140 Brassica napus HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 97.9
Carub.0003s2357 Capsella rubella HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 97.9
CARHR099290 Cardamine hirsuta HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 97.9
ClCG05G004290 Citrullus lanatus HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 95.7
Thhalv10021852m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 97.9
Thhalv10026688m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 97.9
Lj3g0015983 Lotus japonicus HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 95.7
Sp3g20990 Schrenkiella parvula HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 97.9
Sp7g12410 Schrenkiella parvula HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 97.9
Zm00001eb176950 Zea mays HOM05D000207 ORTHO05D004956 2.0e-19 99.4 47 97.9
MD03G1200200 Malus domestica HOM05D000207 ORTHO05D004956 2.6e-19 99.0 47 93.6
MD11G1217300 Malus domestica HOM05D000207 ORTHO05D004956 2.6e-19 99.0 47 93.6
Sed0003648 Sechium edule HOM05D000207 ORTHO05D004956 2.6e-19 99.0 47 95.7
Sed0023527 Sechium edule HOM05D000207 ORTHO05D004956 2.6e-19 99.0 47 95.7
Hund11897 Selenicereus undatus HOM05D000207 ORTHO05D004956 2.6e-19 99.0 47 95.7
THA.LOC104808632 Tarenaya hassleriana HOM05D000207 ORTHO05D004956 2.6e-19 99.0 47 95.7
vmacro21388 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.6e-19 99.0 52 88.5
vmacro21393 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.6e-19 99.0 49 91.8
Hma1.2p1_0992F.1_g245270 Hydrangea macrophylla HOM05D000207 ORTHO05D004956 3.4e-19 98.6 47 93.6
Nitab4.5_0001379g0120 Nicotiana tabacum HOM05D000207 ORTHO05D004956 3.4e-19 98.6 47 95.7
Nitab4.5_0003038g0050 Nicotiana tabacum HOM05D000207 ORTHO05D004956 3.4e-19 98.6 47 95.7
Solyc04g008890.3 Solanum lycopersicum HOM05D000207 ORTHO05D004956 3.4e-19 98.6 47 95.7
Sopen04g004070 Solanum pennellii HOM05D000207 ORTHO05D004956 3.4e-19 98.6 47 95.7
Sopen08g022730 Solanum pennellii HOM05D000207 ORTHO05D004956 3.4e-19 98.6 47 95.7
PGSC0003DMG400025301 Solanum tuberosum HOM05D000207 ORTHO05D004956 3.4e-19 98.6 47 95.7
PGSC0003DMG400026872 Solanum tuberosum HOM05D000207 ORTHO05D004956 3.4e-19 98.6 47 95.7
Actinidia39908 Actinidia chinensis HOM05D000207 ORTHO05D004956 4.5e-19 98.2 47 93.6
HanXRQChr03g0091521 Helianthus annuus HOM05D000207 ORTHO05D004956 4.5e-19 98.2 47 93.6
HanXRQChr13g0421281 Helianthus annuus HOM05D000207 ORTHO05D004956 4.5e-19 98.2 47 93.6
PSO063G3293 Papaver somniferum HOM05D000207 ORTHO05D004956 4.5e-19 98.2 47 93.6
Aa31LG9G3040 Aethionema arabicum HOM05D001185 ORTHO05D002551 5.9e-19 97.8 47 95.7
AL3G37970 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 5.9e-19 97.8 47 95.7
AT3G23325 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 5.9e-19 97.8 47 95.7
BcaB02g08614 Brassica carinata HOM05D000207 ORTHO05D000606 5.9e-19 97.8 47 95.7
BolC4t25716H Brassica oleracea HOM05D000207 ORTHO05D004956 5.9e-19 97.8 47 95.7
BolC7t41906H Brassica oleracea HOM05D000207 ORTHO05D004956 5.9e-19 97.8 47 95.7
BraA07t28708Z Brassica rapa HOM05D000207 ORTHO05D004956 5.9e-19 97.8 47 95.7
Cfa022948 Carpinus fangiana HOM05D000411 ORTHO05D004956 5.9e-19 97.8 54 85.2
FvH4_3g22750 Fragaria vesca HOM05D000207 ORTHO05D004956 5.9e-19 97.8 47 93.6
FvH4_7g05750 Fragaria vesca HOM05D000207 ORTHO05D004956 5.9e-19 97.8 47 93.6
FAN01G2221 Fragaria x ananassa HOM05D000207 ORTHO05D004956 5.9e-19 97.8 47 93.6
FAN02G2410 Fragaria x ananassa HOM05D000709 ORTHO05D004956 5.9e-19 97.8 47 93.6
FAN05G5047 Fragaria x ananassa HOM05D000709 ORTHO05D004956 5.9e-19 97.8 47 93.6
FAN14G2395 Fragaria x ananassa HOM05D000709 ORTHO05D004956 5.9e-19 97.8 47 93.6
FAN16G2286 Fragaria x ananassa HOM05D000207 ORTHO05D004956 5.9e-19 97.8 47 93.6
FAN16G2624 Fragaria x ananassa HOM05D000207 ORTHO05D004956 5.9e-19 97.8 47 93.6
FAN25G2312 Fragaria x ananassa HOM05D000207 ORTHO05D004956 5.9e-19 97.8 47 93.6
RcHm_v2.0_Chr5g0039761 Rosa chinensis HOM05D000207 ORTHO05D004956 5.9e-19 97.8 47 93.6
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 7.7e-19 97.4 45 100.0
MSTRG.21917 Avicennia marina HOM05D000207 ORTHO05D004956 7.7e-19 97.4 50 90.0
Glyma.08G291500 Glycine max HOM05D000207 ORTHO05D004956 7.7e-19 97.4 45 100.0
Sc25g0003710 Simmondsia chinensis HOM05D000207 ORTHO05D004956 7.7e-19 97.4 45 100.0
AUR62026315 Chenopodium quinoa HOM05D000207 ORTHO05D004956 1.0e-18 97.1 45 97.8
AUR62026510 Chenopodium quinoa HOM05D000207 ORTHO05D004956 1.0e-18 97.1 45 97.8
CsaV3_6G051140 Cucumis sativus L. HOM05D000207 ORTHO05D004956 1.0e-18 97.1 45 97.8
Solyc08g069080.4 Solanum lycopersicum HOM05D000207 ORTHO05D004956 1.0e-18 97.1 47 93.6
HPP92_005049 Vanilla planifolia HOM05D000207 ORTHO05D004956 1.0e-18 97.1 45 97.8
Migut.N00279 Erythranthe guttata HOM05D000207 ORTHO05D004956 1.3e-18 96.7 47 93.6
SalBow3G2895 Salvia bowleyana HOM05D000207 ORTHO05D004956 1.3e-18 96.7 47 93.6
Actinidia11350 Actinidia chinensis HOM05D000207 ORTHO05D004956 1.7e-18 96.3 47 91.5
Lsat_1_v5_gn_6_103061 Lactuca sativa HOM05D000207 ORTHO05D004956 1.7e-18 96.3 45 95.6
FAN03G1535 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.2e-18 95.9 46 93.5
FAN06G2225 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.2e-18 95.9 46 93.5
FAN10G1241 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.2e-18 95.9 46 93.5
FAN09G1394 Fragaria x ananassa HOM05D000709 ORTHO05D004956 3.8e-18 95.1 47 91.5
unitig_748.g7329 Utricularia gibba HOM05D000207 ORTHO05D000606 3.8e-18 95.1 47 93.6
vmacro15450 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 3.8e-18 95.1 45 95.6
arahy.Tifrunner.gnm1.ann1.6C1XPZ Arachis hypogaea HOM05D000207 ORTHO05D004956 5.0e-18 94.7 45 97.8
Migut.G00508 Erythranthe guttata HOM05D000207 ORTHO05D004956 5.0e-18 94.7 47 91.5
PGSC0003DMG400029581 Solanum tuberosum HOM05D000207 ORTHO05D004956 5.0e-18 94.7 45 95.6
Dinv36552 Davidia involucrata HOM05D000207 ORTHO05D004956 1.1e-17 93.6 45 95.6
MBI16_g42515_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 2.5e-17 92.4 76 63.2
Peaxi162Scf00681g00334 Petunia axillaris HOM05D000207 ORTHO05D004956 2.5e-17 92.4 72 68.1
Eucgr.L00218 Eucalyptus grandis HOM05D000207 ORTHO05D004956 2.7e-16 89.0 47 87.2
MCO09G487 Micromonas commoda HOM05D000207 ORTHO05D004956 4.6e-16 88.2 45 86.7
MBI07_g16899_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 1.0e-15 87.0 67 68.7
Cre14.g627900 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D004956 2.3e-15 85.9 44 84.1
PRCOL_00006150 Prasinoderma coloniale HOM05D000207 ORTHO05D004956 5.1e-15 84.7 47 80.9
A06p07840 Brassica napus HOM05D000207 ORTHO05D004956 2.0e-14 82.8 41 90.2
AagrBONN_evm.TU.Sc2ySwM_344.4872 Anthoceros agrestis HOM05D000170 ORTHO05D000159 3.7e-13 78.6 50 78.0
Phvul.009G163800 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 3.7e-13 78.6 35 100.0
vmacro12999 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 8.2e-13 77.4 39 89.7
MD12G1011100 Malus domestica HOM05D000207 ORTHO05D004956 9.1e-12 73.9 56 67.9
RcHm_v2.0_Chr7g0179491 Rosa chinensis HOM05D000207 ORTHO05D004956 3.4e-11 72.0 39 84.6
MBI13_g27727_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 1.2e-08 63.5 31 93.5
Zm00001eb114180 Zea mays HOM05D000207 ORTHO05D004956 2.1e-08 62.8 38 78.9
unitig_32.g11701 Utricularia gibba HOM05D000207 ORTHO05D004956 1.0e-07 60.5 47 68.1
Lj4g0025571 Lotus japonicus HOM05D000207 ORTHO05D004956 1.4e-07 60.1 47 68.1


User provided reference genes

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